메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; AMYOTROPHIC LATERAL SCLEROSIS; EXOME; FEMALE; GENETIC VARIATION; GENETICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING; HUMAN; MALE; MIDDLE AGED; MUTATION; ONSET AGE; RECESSIVE GENE; VERY ELDERLY;

EID: 84924942716     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep09124     Document Type: Article
Times cited : (51)

References (49)
  • 1
    • 84893649256 scopus 로고    scopus 로고
    • State of play in amyotrophic lateral sclerosis genetics
    • Renton, A. E., Chio, A. & Traynor, B. J. State of play in amyotrophic lateral sclerosis genetics. Nat. Neurosci. 17, 17-23 (2014).
    • (2014) Nat. Neurosci. , vol.17 , pp. 17-23
    • Renton, A.E.1    Chio, A.2    Traynor, B.J.3
  • 3
    • 84922481787 scopus 로고    scopus 로고
    • Dissection of genetic factors associated with amyotrophic lateral sclerosis
    • Leblond, C. S., Kaneb, H. M., Dion, P. A. & Rouleau, G. A. Dissection of genetic factors associated with amyotrophic lateral sclerosis. Exp. Neurol. 262, 91-101 (2014).
    • (2014) Exp. Neurol. , vol.262 , pp. 91-101
    • Leblond, C.S.1    Kaneb, H.M.2    Dion, P.A.3    Rouleau, G.A.4
  • 4
    • 84887624154 scopus 로고    scopus 로고
    • Homozygosity analysis in amyotrophic lateral sclerosis
    • Mok, K. et al. Homozygosity analysis in amyotrophic lateral sclerosis. Eur. J. Hum. Genet. 21, 1429-1435 (2013).
    • (2013) Eur. J. Hum. Genet. , vol.21 , pp. 1429-1435
    • Mok, K.1
  • 5
    • 80755133370 scopus 로고    scopus 로고
    • Clinical genetics of amyotrophic lateral sclerosis: What do we really know?
    • Andersen, P. M. & Al-Chalabi, A. Clinical genetics of amyotrophic lateral sclerosis: what do we really know? Nat. Rev. Neurol. 7, 603-615 (2011).
    • (2011) Nat. Rev. Neurol. , vol.7 , pp. 603-615
    • Andersen, P.M.1    Al-Chalabi, A.2
  • 6
    • 79952901359 scopus 로고    scopus 로고
    • A de novo missense mutation of the FUS gene in a "true" sporadic ALS case
    • Chio, A. et al. A de novo missense mutation of the FUS gene in a "true" sporadic ALS case. Neurobiol. Aging 32, 553 e523-556 (2011).
    • (2011) Neurobiol. Aging , vol.32 , pp. 553e523-553e556
    • Chio, A.1
  • 7
    • 84890439549 scopus 로고    scopus 로고
    • ERBB4 mutations that disrupt the neuregulin-ErbB4 pathway cause amyotrophic lateral sclerosis type 19
    • Takahashi, Y. et al. ERBB4 mutations that disrupt the neuregulin-ErbB4 pathway cause amyotrophic lateral sclerosis type 19. Am. J. Hum. Genet. 93, 900-905 (2013).
    • (2013) Am. J. Hum. Genet. , vol.93 , pp. 900-905
    • Takahashi, Y.1
  • 8
    • 84881166342 scopus 로고    scopus 로고
    • De novo mutations in ataxin-2 gene and ALS risk
    • Laffita-Mesa, J. M. et al. De novo mutations in ataxin-2 gene and ALS risk. PLoS One 8, e70560 (2013).
    • (2013) PLoS One , vol.8 , pp. e70560
    • Laffita-Mesa, J.M.1
  • 9
    • 79954994064 scopus 로고    scopus 로고
    • Using case-parent trios to look for rare de novo genetic variants in adult-onset neurodegenerative diseases
    • Pamphlett, R., Morahan, J. M. & Yu, B. Using case-parent trios to look for rare de novo genetic variants in adult-onset neurodegenerative diseases. J. Neurosci. Methods 197, 297-301 (2011).
    • (2011) J. Neurosci. Methods , vol.197 , pp. 297-301
    • Pamphlett, R.1    Morahan, J.M.2    Yu, B.3
  • 10
    • 84887404098 scopus 로고    scopus 로고
    • Exome sequencing to identify de novo mutations in sporadic ALS trios
    • Chesi, A. et al. Exome sequencing to identify de novo mutations in sporadic ALS trios. Nat. Neurosci. 16, 851-855 (2013).
    • (2013) Nat. Neurosci. , vol.16 , pp. 851-855
    • Chesi, A.1
  • 11
    • 33646429798 scopus 로고    scopus 로고
    • Gene expression analyses reveal molecular relationships among 20 regions of the human CNS
    • Roth, R. B. et al. Gene expression analyses reveal molecular relationships among 20 regions of the human CNS. Neurogenetics 7, 67-80 (2006).
    • (2006) Neurogenetics , vol.7 , pp. 67-80
    • Roth, R.B.1
  • 12
    • 84865172323 scopus 로고    scopus 로고
    • ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics
    • Abel, O., Powell, J. F., Andersen, P. M. & Al-Chalabi, A. ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics. Hum. Mutat. 33, 1345-1351 (2012).
    • (2012) Hum. Mutat. , vol.33 , pp. 1345-1351
    • Abel, O.1    Powell, J.F.2    Andersen, P.M.3    Al-Chalabi, A.4
  • 13
    • 84880440278 scopus 로고    scopus 로고
    • Mutations in COQ2 in familial and sporadic multiple-system atrophy
    • Multiple-System Atrophy Research Collaboration.Mutations in COQ2 in familial and sporadic multiple-system atrophy. N. Engl. J. Med. 369, 233-244 (2013).
    • (2013) N. Engl. J. Med. , vol.369 , pp. 233-244
  • 14
    • 84856025149 scopus 로고    scopus 로고
    • Small molecule induction of human umbilical stem cells into MBP-positive oligodendrocytes in a defined three-dimensional environment
    • Davis, H., Guo, X., Lambert, S., Stancescu, M. & Hickman, J. J. Small molecule induction of human umbilical stem cells into MBP-positive oligodendrocytes in a defined three-dimensional environment. ACS Chem. Neurosci. 3, 31-39 (2012).
    • (2012) ACS Chem. Neurosci. , vol.3 , pp. 31-39
    • Davis, H.1    Guo, X.2    Lambert, S.3    Stancescu, M.4    Hickman, J.J.5
  • 15
    • 84855486329 scopus 로고    scopus 로고
    • Down-regulation of the ATP-binding cassette transporter 2 (Abca2) reduces amyloid-beta production by altering Nicastrin maturation and intracellular localization
    • Michaki, V. et al. Down-regulation of the ATP-binding cassette transporter 2 (Abca2) reduces amyloid-beta production by altering Nicastrin maturation and intracellular localization. J. Biol. Chem. 287, 1100-1111 (2012).
    • (2012) J. Biol. Chem. , vol.287 , pp. 1100-1111
    • Michaki, V.1
  • 16
    • 34547138938 scopus 로고    scopus 로고
    • ABCA2 deficiency results in abnormal sphingolipid metabolism in mouse brain
    • Sakai, H. et al. ABCA2 deficiency results in abnormal sphingolipid metabolism in mouse brain. J. Biol. Chem. 282, 19692-19699 (2007).
    • (2007) J. Biol. Chem. , vol.282 , pp. 19692-19699
    • Sakai, H.1
  • 17
    • 84859339977 scopus 로고    scopus 로고
    • Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database
    • Lill, C. M. et al. Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database. PLoS Genet. 8, e1002548 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1002548
    • Lill, C.M.1
  • 18
    • 42249102078 scopus 로고    scopus 로고
    • Transgenics, toxicity and therapeutics in rodent models of mutant SOD1-mediated familial ALS
    • Turner, B. J. & Talbot, K. Transgenics, toxicity and therapeutics in rodent models of mutant SOD1-mediated familial ALS. Prog. Neurobiol. 85, 94-134 (2008).
    • (2008) Prog. Neurobiol. , vol.85 , pp. 94-134
    • Turner, B.J.1    Talbot, K.2
  • 19
    • 84881368752 scopus 로고    scopus 로고
    • Over-expression of N-type calcium channels in cortical neurons from amouse model of Amyotrophic Lateral Sclerosis
    • Pieri, M., Caioli, S., Canu, N., Mercuri, N. B., Guatteo, E. & Zona, C. Over-expression of N-type calcium channels in cortical neurons from amouse model of Amyotrophic Lateral Sclerosis. Exp. Neurol. 247, 349-358 (2013).
    • (2013) Exp. Neurol. , vol.247 , pp. 349-358
    • Pieri, M.1    Caioli, S.2    Canu, N.3    Mercuri, N.B.4    Guatteo, E.5    Zona, C.6
  • 20
    • 44949243975 scopus 로고    scopus 로고
    • Cortical hyperexcitability may precede the onset of familial amyotrophic lateral sclerosis
    • Vucic, S., Nicholson, G. A. & Kiernan, M. C. Cortical hyperexcitability may precede the onset of familial amyotrophic lateral sclerosis. Brain 131, 1540-1550 (2008).
    • (2008) Brain , vol.131 , pp. 1540-1550
    • Vucic, S.1    Nicholson, G.A.2    Kiernan, M.C.3
  • 22
    • 0037221596 scopus 로고    scopus 로고
    • Global loss of Na,K-ATPase and its nitric oxide-mediated regulation in a transgenic mouse model of amyotrophic lateral sclerosis
    • Ellis, D. Z., Rabe, J. & Sweadner, K. J. Global loss of Na,K-ATPase and its nitric oxide-mediated regulation in a transgenic mouse model of amyotrophic lateral sclerosis. J. Neurosci. 23, 43-51 (2003).
    • (2003) J. Neurosci. , vol.23 , pp. 43-51
    • Ellis, D.Z.1    Rabe, J.2    Sweadner, K.J.3
  • 23
    • 84877678524 scopus 로고    scopus 로고
    • Mechanisms, models and biomarkers in amyotrophic lateral sclerosis
    • Turner, M. R. et al. Mechanisms, models and biomarkers in amyotrophic lateral sclerosis. Amyotroph. Lateral Scler. Frontotemporal Degener. 14 Suppl 1, 19-32 (2013).
    • (2013) Amyotroph. Lateral Scler. Frontotemporal Degener. , vol.14 , pp. 19-32
    • Turner, M.R.1
  • 24
    • 84884592445 scopus 로고    scopus 로고
    • Genic intolerance to functional variation and the interpretation of personal genomes
    • Petrovski, S., Wang, Q., Heinzen, E. L., Allen, A. S. & Goldstein, D. B. Genic intolerance to functional variation and the interpretation of personal genomes. PLoS Genet. 9, e1003709 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003709
    • Petrovski, S.1    Wang, Q.2    Heinzen, E.L.3    Allen, A.S.4    Goldstein, D.B.5
  • 25
    • 84903367060 scopus 로고    scopus 로고
    • A de novo nonsense mutation of the FUS gene in an apparently familial amyotrophic lateral sclerosis case
    • Calvo, A. et al. A de novo nonsense mutation of the FUS gene in an apparently familial amyotrophic lateral sclerosis case. Neurobiol. Aging 35, 1513 e1517-1511 (2014).
    • (2014) Neurobiol. Aging , vol.35
    • Calvo, A.1
  • 26
    • 84893715551 scopus 로고    scopus 로고
    • Genetic analysis of SS18L1 in French amyotrophic lateral sclerosis
    • Teyssou, E. et al. Genetic analysis of SS18L1 in French amyotrophic lateral sclerosis. Neurobiol. Aging 35, 1213 e1219-1213 e1212 (2014).
    • (2014) Neurobiol. Aging , vol.35
    • Teyssou, E.1
  • 27
    • 84860741138 scopus 로고    scopus 로고
    • Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
    • O'roak, B. J. et al. Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations. Nature 485, 246-250 (2012).
    • (2012) Nature , vol.485 , pp. 246-250
    • O'Roak, B.J.1
  • 28
    • 80052479573 scopus 로고    scopus 로고
    • Loss of muscarinic M1 receptor exacerbates Alzheimer's disease-like pathology and cognitive decline
    • Medeiros, R. et al. Loss of muscarinic M1 receptor exacerbates Alzheimer's disease-like pathology and cognitive decline. Am. J. Pathol. 179, 980-991 (2011).
    • (2011) Am. J. Pathol. , vol.179 , pp. 980-991
    • Medeiros, R.1
  • 29
    • 77949826581 scopus 로고    scopus 로고
    • Deletion of M1 muscarinic acetylcholine receptors increases amyloid pathology in vitro and in vivo
    • Davis, A. A., Fritz, J. J., Wess, J., Lah, J. J. & Levey, A. I. Deletion of M1 muscarinic acetylcholine receptors increases amyloid pathology in vitro and in vivo. J. Neurosci. 30, 4190-4196 (2010).
    • (2010) J. Neurosci. , vol.30 , pp. 4190-4196
    • Davis, A.A.1    Fritz, J.J.2    Wess, J.3    Lah, J.J.4    Levey, A.I.5
  • 30
    • 84876416417 scopus 로고    scopus 로고
    • Cholinergic receptor alterations in the brain stem of spinal cord injured rats
    • Romeo, C., Raveendran, A. T., Sobha, N. M. & Paulose, C. S. Cholinergic receptor alterations in the brain stem of spinal cord injured rats. Neurochem. Res. 38, 389-397 (2013).
    • (2013) Neurochem. Res. , vol.38 , pp. 389-397
    • Romeo, C.1    Raveendran, A.T.2    Sobha, N.M.3    Paulose, C.S.4
  • 31
    • 34548646702 scopus 로고    scopus 로고
    • ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: A genome-wide association study
    • Van Es, M. A. et al. ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study. Lancet Neurol. 6, 869-877 (2007).
    • (2007) Lancet Neurol. , vol.6 , pp. 869-877
    • Van Es, M.A.1
  • 32
    • 43649100018 scopus 로고    scopus 로고
    • Endoplasmic reticulum stress and induction of the unfolded protein response in human sporadic amyotrophic lateral sclerosis
    • Atkin, J. D., Farg, M. A., Walker, A. K., Mclean, C., Tomas, D. & Horne, M. K. Endoplasmic reticulum stress and induction of the unfolded protein response in human sporadic amyotrophic lateral sclerosis. Neurobiol. Dis. 30, 400-407 (2008).
    • (2008) Neurobiol. Dis. , vol.30 , pp. 400-407
    • Atkin, J.D.1    Farg, M.A.2    Walker, A.K.3    Mclean, C.4    Tomas, D.5    Horne, M.K.6
  • 33
    • 84870710356 scopus 로고    scopus 로고
    • Neuronal overexpression of IP(3) receptor 2 is detrimental in mutant SOD1 mice
    • Staats, K. A. et al. Neuronal overexpression of IP(3) receptor 2 is detrimental in mutant SOD1 mice. Biochem. Biophys. Res. Commun. 429, 210-213 (2012).
    • (2012) Biochem. Biophys. Res. Commun. , vol.429 , pp. 210-213
    • Staats, K.A.1
  • 34
    • 78951491040 scopus 로고    scopus 로고
    • Novel mechanism of increased Ca2+ release following oxidative stress in neuronal cells involves type 2 inositol-1,4,5-trisphosphate receptors
    • Kaja, S. et al. Novel mechanism of increased Ca2+ release following oxidative stress in neuronal cells involves type 2 inositol-1,4,5-trisphosphate receptors. Neuroscience 175, 281-291 (2011).
    • (2011) Neuroscience , vol.175 , pp. 281-291
    • Kaja, S.1
  • 35
    • 64549117768 scopus 로고    scopus 로고
    • A two-stage genome-wide association study of sporadic amyotrophic lateral sclerosis
    • Chio, A. et al. A two-stage genome-wide association study of sporadic amyotrophic lateral sclerosis. Hum. Mol. Genet. 18, 1524-1532 (2009).
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 1524-1532
    • Chio, A.1
  • 36
    • 84885608405 scopus 로고    scopus 로고
    • Amyotrophic lateral sclerosis: Problems and prospects
    • Sreedharan, J. & Brown, R. H., Jr. Amyotrophic lateral sclerosis: Problems and prospects. Ann. Neurol. 74, 309-316 (2013).
    • (2013) Ann. Neurol. , vol.74 , pp. 309-316
    • Sreedharan, J.1    Brown, R.H.2
  • 37
    • 0037372292 scopus 로고    scopus 로고
    • Alterations in G(1) to S phase cell-cycle regulators during amyotrophic lateral sclerosis
    • Ranganathan, S. & Bowser, R. Alterations in G(1) to S phase cell-cycle regulators during amyotrophic lateral sclerosis. Am. J. Pathol. 162, 823-835 (2003).
    • (2003) Am. J. Pathol. , vol.162 , pp. 823-835
    • Ranganathan, S.1    Bowser, R.2
  • 38
    • 84865071988 scopus 로고    scopus 로고
    • Evidence for an oligogenic basis of amyotrophic lateral sclerosis
    • Van Blitterswijk, M. et al. Evidence for an oligogenic basis of amyotrophic lateral sclerosis. Hum. Mol. Genet. 21, 3776-3784 (2012).
    • (2012) Hum. Mol. Genet. , vol.21 , pp. 3776-3784
    • Van Blitterswijk, M.1
  • 39
    • 70450158919 scopus 로고    scopus 로고
    • A genome-wide analysis of brain DNA methylation identifies new candidate genes for sporadic amyotrophic lateral sclerosis
    • Morahan, J. M., Yu, B., Trent, R. J. & Pamphlett, R. A genome-wide analysis of brain DNA methylation identifies new candidate genes for sporadic amyotrophic lateral sclerosis. Amyotroph. Lateral Scler. 10, 418-429 (2009).
    • (2009) Amyotroph. Lateral Scler. , vol.10 , pp. 418-429
    • Morahan, J.M.1    Yu, B.2    Trent, R.J.3    Pamphlett, R.4
  • 40
    • 80052886551 scopus 로고    scopus 로고
    • Looking for differences in copy number between blood and brain in sporadic amyotrophic lateral sclerosis
    • Pamphlett, R., Morahan, J. M., Luquin, N. & Yu, B. Looking for differences in copy number between blood and brain in sporadic amyotrophic lateral sclerosis. Muscle Nerve 44, 492-498 (2011).
    • (2011) Muscle Nerve , vol.44 , pp. 492-498
    • Pamphlett, R.1    Morahan, J.M.2    Luquin, N.3    Yu, B.4
  • 41
    • 84865347668 scopus 로고    scopus 로고
    • A novel TARDBP insertion/deletion mutation in the flail arm variant of amyotrophic lateral sclerosis
    • Solski, J. A. et al. A novel TARDBP insertion/deletion mutation in the flail arm variant of amyotrophic lateral sclerosis. Amyotroph. Lateral Scler. 13, 465-470 (2012).
    • (2012) Amyotroph. Lateral Scler. , vol.13 , pp. 465-470
    • Solski, J.A.1
  • 42
    • 84860780495 scopus 로고    scopus 로고
    • De novo mutations revealed by whole-exome sequencing are strongly associated with autism
    • Sanders, S. J. et al. De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature 485, 237-241 (2012).
    • (2012) Nature , vol.485 , pp. 237-241
    • Sanders, S.J.1
  • 43
    • 84884595534 scopus 로고    scopus 로고
    • Family-based association tests for sequence data, and comparisons with population-based association tests
    • Ionita-Laza, I., Lee, S., Makarov, V., Buxbaum, J. D. & Lin, X. Family-based association tests for sequence data, and comparisons with population-based association tests. Eur. J. Hum. Genet. 21, 1158-1162 (2013).
    • (2013) Eur. J. Hum. Genet. , vol.21 , pp. 1158-1162
    • Ionita-Laza, I.1    Lee, S.2    Makarov, V.3    Buxbaum, J.D.4    Lin, X.5
  • 44
    • 84891831893 scopus 로고    scopus 로고
    • Rare-variant extensions of the transmission disequilibrium test: Application to autism exome sequence data
    • He, Z. et al. Rare-variant extensions of the transmission disequilibrium test: application to autism exome sequence data. Am. J. Hum. Genet. 94, 33-46 (2014).
    • (2014) Am. J. Hum. Genet. , vol.94 , pp. 33-46
    • He, Z.1
  • 45
    • 85005900971 scopus 로고    scopus 로고
    • Uptake of inorganic mercury by human locus ceruleus and corticomotor neurons: Implications for amyotrophic lateral sclerosis
    • Pamphlett, R. & Kum Jew, S. Uptake of inorganic mercury by human locus ceruleus and corticomotor neurons: implications for amyotrophic lateral sclerosis. Acta Neuropathol. Commun. 1, 13 (2013).
    • (2013) Acta Neuropathol. Commun. , vol.1 , pp. 13
    • Pamphlett, R.1    Kum Jew, S.2
  • 46
    • 84880735178 scopus 로고    scopus 로고
    • Is exposure to cyanobacteria an environmental risk factor for amyotrophic lateral sclerosis and other neurodegenerative diseases?
    • Bradley, W. G. et al. Is exposure to cyanobacteria an environmental risk factor for amyotrophic lateral sclerosis and other neurodegenerative diseases? Amyotroph. Lateral Scler. Frontotemporal Degener. 14, 325-333 (2013).
    • (2013) Amyotroph. Lateral Scler. Frontotemporal Degener. , vol.14 , pp. 325-333
    • Bradley, W.G.1
  • 47
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 48
    • 80053176070 scopus 로고    scopus 로고
    • Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms
    • Howrigan, D. P., Simonson, M. A. & Keller, M. C. Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms. BMC Genomics 12, 460 (2011).
    • (2011) BMC Genomics , vol.12 , pp. 460
    • Howrigan, D.P.1    Simonson, M.A.2    Keller, M.C.3
  • 49
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4, 44-57 (2009).
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.