-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0004134698
-
-
Princeton University Press, New Jersey, USA
-
Andersson M, (1994) Sexual Selection. Princeton University Press, New Jersey, USA.
-
(1994)
Sexual Selection
-
-
Andersson, M.1
-
3
-
-
59449103500
-
Controlling type-I error of the McDonald-Kreitman Test in genomewide scans for selection on noncoding DNA
-
Andolfatto P, (2008) Controlling type-I error of the McDonald-Kreitman Test in genomewide scans for selection on noncoding DNA. Genetics, 180, 1767-1771.
-
(2008)
Genetics
, vol.180
, pp. 1767-1771
-
-
Andolfatto, P.1
-
4
-
-
2942526369
-
Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey
-
Axelsson E, Smith NGC, Sundstrom H, Berlin S, Ellegren H, (2004) Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey. Molecular Biology and Evolution, 21, 1538-1547.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1538-1547
-
-
Axelsson, E.1
Smith, N.G.C.2
Sundstrom, H.3
Berlin, S.4
Ellegren, H.5
-
5
-
-
44849107389
-
Natural selection in avian protein-coding genes expressed in brain
-
Axelsson E, Hultin-Rosenberg L, Brandström M, Zwahlen M, Clayton DF, Ellegren H, (2008) Natural selection in avian protein-coding genes expressed in brain. Molecular Ecology, 17, 3008-3017.
-
(2008)
Molecular Ecology
, vol.17
, pp. 3008-3017
-
-
Axelsson, E.1
Hultin-Rosenberg, L.2
Brandström, M.3
Zwahlen, M.4
Clayton, D.F.5
Ellegren, H.6
-
6
-
-
47649117051
-
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila
-
Baines JF, Sawyer SA, Hartl DL, Parsch J, (2008) Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Molecular Biology and Evolution, 25, 1639-1650.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1639-1650
-
-
Baines, J.F.1
Sawyer, S.A.2
Hartl, D.L.3
Parsch, J.4
-
7
-
-
0037653851
-
Life history and the male mutation bias
-
Bartosch-Harlid A, Berlin S, Smith NGC, Moller AP, Ellegren H, (2003) Life history and the male mutation bias. Evolution, 57, 2398-2406.
-
(2003)
Evolution
, vol.57
, pp. 2398-2406
-
-
Bartosch-Harlid, A.1
Berlin, S.2
Smith, N.G.C.3
Moller, A.P.4
Ellegren, H.5
-
8
-
-
35948940895
-
Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
-
Begun DJ, Holloway AK, Stevens K, et al,. (2007) Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biology, 5, 2534-2559.
-
(2007)
PLoS Biology
, vol.5
, pp. 2534-2559
-
-
Begun, D.J.1
Holloway, A.K.2
Stevens, K.3
-
9
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B, 57, 289-300.
-
(1995)
Journal of the Royal Statistical Society Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
12
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand D, Soumillon M, Necsulea A, et al,. (2011) The evolution of gene expression levels in mammalian organs. Nature, 478, 343-348.
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
-
13
-
-
0036045092
-
Origin and evolution of avian microchromosomes
-
Burt DW, (2002) Origin and evolution of avian microchromosomes. Cytogenetic and Genome Research, 96, 97-112.
-
(2002)
Cytogenetic and Genome Research
, vol.96
, pp. 97-112
-
-
Burt, D.W.1
-
14
-
-
60349093708
-
Effective population size and patterns of molecular evolution and variation
-
Charlesworth B, (2009) Effective population size and patterns of molecular evolution and variation. Nature Reviews Genetics, 10, 195-205.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 195-205
-
-
Charlesworth, B.1
-
15
-
-
0023501735
-
The relative rates of evolution of sex chromosomes and autosomes
-
Charlesworth B, Coyne JA, Barton NH, (1987) The relative rates of evolution of sex chromosomes and autosomes. The American Naturalist, 130, 113-146.
-
(1987)
The American Naturalist
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.H.3
-
16
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
Charlesworth B, Morgan MT, Charlesworth D, (1993) The effect of deleterious mutations on neutral molecular variation. Genetics, 134, 1289-1303.
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
17
-
-
84864655409
-
Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution
-
Connallon T, Singh ND, Clark AG, (2012) Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution. Molecular Biology and Evolution, 29, 1933-1942.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1933-1942
-
-
Connallon, T.1
Singh, N.D.2
Clark, A.G.3
-
18
-
-
84863426419
-
The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes
-
Corl A, Ellegren H, (2012) The genomic signature of sexual selection in the genetic diversity of the sex chromosomes and autosomes. Evolution, 66, 2138-2149.
-
(2012)
Evolution
, vol.66
, pp. 2138-2149
-
-
Corl, A.1
Ellegren, H.2
-
19
-
-
77957903598
-
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
-
Dalloul RA, Long JA, Zimin AV, et al,. (2010) Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biology, 8, e1000475.
-
(2010)
PLoS Biology
, vol.8
, pp. e1000475
-
-
Dalloul, R.A.1
Long, J.A.2
Zimin, A.V.3
-
20
-
-
84903435460
-
The role of sex chromosomes in sexual dimorphism: Discordance between molecular and phenotypic data
-
Dean R, Mank JE, (2014) The role of sex chromosomes in sexual dimorphism: discordance between molecular and phenotypic data. Journal of Evolutionary Biology, 27, 1443-1453.
-
(2014)
Journal of Evolutionary Biology
, vol.27
, pp. 1443-1453
-
-
Dean, R.1
Mank, J.E.2
-
21
-
-
0036038208
-
Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes
-
Dimcheff DE, Drovetski SV, Mindell DP, (2002) Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Molecular Phylogenetics and Evolution, 24, 203-215.
-
(2002)
Molecular Phylogenetics and Evolution
, vol.24
, pp. 203-215
-
-
Dimcheff, D.E.1
Drovetski, S.V.2
Mindell, D.P.3
-
22
-
-
84871809302
-
Star: Ultrafast universal RNA-seq aligner
-
Dobin A, Davis CA, Schlesinger F, et al,. (2013) star: ultrafast universal RNA-seq aligner. Bioinformatics, 29, 15-21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
-
23
-
-
9644287861
-
Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity
-
Dorus S, Evans PD, Wyckoff GJ, Choi SS, Lahn BT, (2004) Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity. Nature Genetics, 36, 1326-1329.
-
(2004)
Nature Genetics
, vol.36
, pp. 1326-1329
-
-
Dorus, S.1
Evans, P.D.2
Wyckoff, G.J.3
Choi, S.S.4
Lahn, B.T.5
-
24
-
-
34047230770
-
Discovering motifs in ranked lists of DNA sequences
-
Eden E, Lipson D, Yogev S, Yakhini Z, (2007) Discovering motifs in ranked lists of DNA sequences. PLoS Computational Biology, 3, 508-522.
-
(2007)
PLoS Computational Biology
, vol.3
, pp. 508-522
-
-
Eden, E.1
Lipson, D.2
Yogev, S.3
Yakhini, Z.4
-
25
-
-
60849139395
-
Gorilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
-
Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z, (2009) gorilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics, 10, 48.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 48
-
-
Eden, E.1
Navon, R.2
Steinfeld, I.3
Lipson, D.4
Yakhini, Z.5
-
26
-
-
84888634025
-
The evolutionary genomics of birds
-
Ellegren H, (2013) The evolutionary genomics of birds. Annual Review of Ecology, Evolution, and Systematics, 44, 239-259.
-
(2013)
Annual Review of Ecology, Evolution, and Systematics
, vol.44
, pp. 239-259
-
-
Ellegren, H.1
-
27
-
-
36849094065
-
Faced with inequality: Chicken do not have a general dosage compensation of sex-linked genes
-
Ellegren H, Hultin-Rosenberg L, Brunstrom B, Dencker L, Kultima K, Scholz B, (2007) Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes. BMC Biology, 5, 40.
-
(2007)
BMC Biology
, vol.5
, pp. 40
-
-
Ellegren, H.1
Hultin-Rosenberg, L.2
Brunstrom, B.3
Dencker, L.4
Kultima, K.5
Scholz, B.6
-
28
-
-
84870297139
-
The genomic landscape of species divergence in Ficedula flycatchers
-
Ellegren H, Smeds L, Burri R, et al,. (2012) The genomic landscape of species divergence in Ficedula flycatchers. Nature, 491, 756-760.
-
(2012)
Nature
, vol.491
, pp. 756-760
-
-
Ellegren, H.1
Smeds, L.2
Burri, R.3
-
29
-
-
84875391572
-
Ensembl 2013
-
Flicek P, Ahmed I, Amode MR, et al,. (2013) Ensembl 2013. Nucleic Acids Research, 41, D48-D55.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
-
30
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, et al,. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29, 644-652.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
-
31
-
-
84863185415
-
Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 Myr of Drosophila evolution
-
Grath S, Parsch J, (2012) Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 Myr of Drosophila evolution. Genome Biology and Evolution, 4, 346-359.
-
(2012)
Genome Biology and Evolution
, vol.4
, pp. 346-359
-
-
Grath, S.1
Parsch, J.2
-
32
-
-
84914115610
-
Swamp: Sliding window alignment masker for paml
-
Harrison PW, Jordan GE, Montgomery SH, (2014) swamp: sliding window alignment masker for paml. Evolutionary Bioinformatics Online, 10, 1-8.
-
(2014)
Evolutionary Bioinformatics Online
, vol.10
, pp. 1-8
-
-
Harrison, P.W.1
Jordan, G.E.2
Montgomery, S.H.3
-
35
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm S, (1979) A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6, 65-70.
-
(1979)
Scandinavian Journal of Statistics
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
37
-
-
84863183635
-
Extensive X-linked adaptive evolution in central chimpanzees
-
Hvilsom C, Qian Y, Bataillon T, et al,. (2012) Extensive X-linked adaptive evolution in central chimpanzees. Proceedings of the National Academy of Sciences of the USA, 109, 2054-2059.
-
(2012)
Proceedings of the National Academy of Sciences of the USA
, vol.109
, pp. 2054-2059
-
-
Hvilsom, C.1
Qian, Y.2
Bataillon, T.3
-
38
-
-
77950657563
-
Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds
-
Itoh Y, Replogle K, Kim Y-H, Wade J, Clayton DF, Arnold AP, (2010) Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds. Genome Research, 20, 512-518.
-
(2010)
Genome Research
, vol.20
, pp. 512-518
-
-
Itoh, Y.1
Replogle, K.2
Kim, Y.-H.3
Wade, J.4
Clayton, D.F.5
Arnold, A.P.6
-
39
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
-
Khaitovich P, Hellmann I, Enard W, et al,. (2005) Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science, 309, 1850-1854.
-
(2005)
Science
, vol.309
, pp. 1850-1854
-
-
Khaitovich, P.1
Hellmann, I.2
Enard, W.3
-
41
-
-
1642399822
-
Male-biased mutation, sex linkage, and the rate of adaptive evolution
-
Kirkpatrick M, Hall DW, (2004a) Male-biased mutation, sex linkage, and the rate of adaptive evolution. Evolution, 58, 437-440.
-
(2004)
Evolution
, vol.58
, pp. 437-440
-
-
Kirkpatrick, M.1
Hall, D.W.2
-
42
-
-
2342544137
-
Sexual selection and sex linkage
-
Kirkpatrick M, Hall DW, (2004b) Sexual selection and sex linkage. Evolution, 58, 683-691.
-
(2004)
Evolution
, vol.58
, pp. 683-691
-
-
Kirkpatrick, M.1
Hall, D.W.2
-
43
-
-
84864279335
-
QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch
-
Knief U, Schielzeth H, Kempenaers B, Ellegren H, Forstmeier W, (2012) QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch. Molecular Ecology, 21, 3704-3717.
-
(2012)
Molecular Ecology
, vol.21
, pp. 3704-3717
-
-
Knief, U.1
Schielzeth, H.2
Kempenaers, B.3
Ellegren, H.4
Forstmeier, W.5
-
44
-
-
69949122158
-
Varscan: Variant detection in massively parallel sequencing of individual and pooled samples
-
Koboldt DC, Chen K, Wylie T, et al,. (2009) varscan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics, 25, 2283-2285.
-
(2009)
Bioinformatics
, vol.25
, pp. 2283-2285
-
-
Koboldt, D.C.1
Chen, K.2
Wylie, T.3
-
45
-
-
84863229597
-
Varscan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt DC, Zhang Q, Larson DE, et al,. (2012) varscan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research, 22, 568-576.
-
(2012)
Genome Research
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
-
46
-
-
84866081815
-
Genomic variation in natural populations of Drosophila melanogaster
-
Langley CH, Stevens K, Cardeno C, et al,. (2012) Genomic variation in natural populations of Drosophila melanogaster. Genetics, 192, 533-598.
-
(2012)
Genetics
, vol.192
, pp. 533-598
-
-
Langley, C.H.1
Stevens, K.2
Cardeno, C.3
-
47
-
-
0036742524
-
Effective population size and population subdivision in demographically structured populations
-
Laporte V, Charlesworth B, (2002) Effective population size and population subdivision in demographically structured populations. Genetics, 162, 501-519.
-
(2002)
Genetics
, vol.162
, pp. 501-519
-
-
Laporte, V.1
Charlesworth, B.2
-
48
-
-
79961123152
-
Rsem: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li B, Dewey CN, (2011) rsem: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics, 12, 323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
49
-
-
68549104404
-
The sequence alignment/map format and samtools
-
Li H, Handsaker B, Wysoker A, et al,. (2009) The sequence alignment/map format and samtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
50
-
-
84864483625
-
Robina: A user-friendly, integrated software solution for RNA-Seq-based transcriptomics
-
Lohse M, Bolger AM, Nagel A, et al,. (2012) robina: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research, 40, W622-W627.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. W622-W627
-
-
Lohse, M.1
Bolger, A.M.2
Nagel, A.3
-
51
-
-
65349150546
-
The W, X, y and Z of sex chromosome dosage compensation
-
Mank JE, (2009) The W, X, Y and Z of sex chromosome dosage compensation. Trends in Genetics, 25, 226-233.
-
(2009)
Trends in Genetics
, vol.25
, pp. 226-233
-
-
Mank, J.E.1
-
52
-
-
60549110047
-
All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome
-
Mank JE, Ellegren H, (2009) All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome. Heredity, 102, 312-320.
-
(2009)
Heredity
, vol.102
, pp. 312-320
-
-
Mank, J.E.1
Ellegren, H.2
-
53
-
-
34248137504
-
Fast-X on the Z: Rapid evolution of sex-linked genes in birds
-
Mank JE, Axelsson E, Ellegren H, (2007a) Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Research, 17, 618-624.
-
(2007)
Genome Research
, vol.17
, pp. 618-624
-
-
Mank, J.E.1
Axelsson, E.2
Ellegren, H.3
-
54
-
-
37549025449
-
Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain
-
Mank JE, Hultin-Rosenberg L, Axelsson E, Ellegren H, (2007b) Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain. Molecular Biology and Evolution, 24, 2698-2706.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 2698-2706
-
-
Mank, J.E.1
Hultin-Rosenberg, L.2
Axelsson, E.3
Ellegren, H.4
-
55
-
-
77249165844
-
Effective population size and the Faster-X Effect: Empirical results and their interpretation
-
Mank JE, Vicoso B, Berlin S, Charlesworth B, (2010a) Effective population size and the Faster-X Effect: empirical results and their interpretation. Evolution, 64, 663-674.
-
(2010)
Evolution
, vol.64
, pp. 663-674
-
-
Mank, J.E.1
Vicoso, B.2
Berlin, S.3
Charlesworth, B.4
-
56
-
-
77249176571
-
Faster-Z evolution is predominantly due to genetic drift
-
Mank JE, Nam K, Ellegren H, (2010b) Faster-Z evolution is predominantly due to genetic drift. Molecular Biology and Evolution, 27, 661-670.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 661-670
-
-
Mank, J.E.1
Nam, K.2
Ellegren, H.3
-
57
-
-
77953798665
-
Ontogenetic complexity of sexual dimorphism and sex-specific selection
-
Mank JE, Nam K, Brunström B, Ellegren H, (2010c) Ontogenetic complexity of sexual dimorphism and sex-specific selection. Molecular Biology and Evolution, 27, 1570-1578.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1570-1578
-
-
Mank, J.E.1
Nam, K.2
Brunström, B.3
Ellegren, H.4
-
58
-
-
84858041341
-
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
-
McCarthy DJ, Chen Y, Smyth GK, (2012) Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Research, 40, 4288-4297.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 4288-4297
-
-
McCarthy, D.J.1
Chen, Y.2
Smyth, G.K.3
-
59
-
-
0026428610
-
Adaptive protein evolution at the ADH locus in Drosophila
-
McDonald JH, Kreitman M, (1991) Adaptive protein evolution at the ADH locus in Drosophila. Nature, 351, 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
60
-
-
79957479702
-
Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein coding sequence evolution
-
Meisel RP, (2011) Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein coding sequence evolution. Molecular Biology and Evolution, 28, 1893-1900.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 1893-1900
-
-
Meisel, R.P.1
-
61
-
-
84882667670
-
The faster-X effect: Integrating theory and data
-
Meisel RP, Connallon T, (2013) The faster-X effect: integrating theory and data. Trends in Genetics, 29, 537-544.
-
(2013)
Trends in Genetics
, vol.29
, pp. 537-544
-
-
Meisel, R.P.1
Connallon, T.2
-
62
-
-
0000122382
-
Testes size, ejaculate quality and sperm competition in birds
-
Moller AP, (1988) Testes size, ejaculate quality and sperm competition in birds. Biological Journal of the Linnean Society, 33, 273-283.
-
(1988)
Biological Journal of the Linnean Society
, vol.33
, pp. 273-283
-
-
Moller, A.P.1
-
63
-
-
0026299384
-
Sperm competition, sperm depletion, paternal care, and relative testis size in birds
-
Moller AP, (1991) Sperm competition, sperm depletion, paternal care, and relative testis size in birds. The American Naturalist, 137, 882-906.
-
(1991)
The American Naturalist
, vol.137
, pp. 882-906
-
-
Moller, A.P.1
-
64
-
-
0028975709
-
Extra-pair paternity, sperm competition and the evolution of testis size in birds
-
Moller AP, Briskie JV, (1995) Extra-pair paternity, sperm competition and the evolution of testis size in birds. Behavioral Ecology and Sociobiology, 36, 357-365.
-
(1995)
Behavioral Ecology and Sociobiology
, vol.36
, pp. 357-365
-
-
Moller, A.P.1
Briskie, J.V.2
-
65
-
-
78650485698
-
Adaptive evolution of four microcephaly genes and the evolution of brain size in anthropoid primates
-
Montgomery SH, Capellini I, Venditti C, Barton RA, Mundy NI, (2011) Adaptive evolution of four microcephaly genes and the evolution of brain size in anthropoid primates. Molecular Biology and Evolution, 28, 625-638.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 625-638
-
-
Montgomery, S.H.1
Capellini, I.2
Venditti, C.3
Barton, R.A.4
Mundy, N.I.5
-
66
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
Pagel M, (1999) Inferring the historical patterns of biological evolution. Nature, 401, 877-884.
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
67
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel M, Meade A, Barker D, (2004) Bayesian estimation of ancestral character states on phylogenies. Systematic Biology, 53, 673-684.
-
(2004)
Systematic Biology
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
68
-
-
84872546066
-
The evolutionary causes and consequences of sex-biased gene expression
-
Parsch J, Ellegren H, (2013) The evolutionary causes and consequences of sex-biased gene expression. Nature Reviews. Genetics, 14, 83-87.
-
(2013)
Nature Reviews. Genetics
, vol.14
, pp. 83-87
-
-
Parsch, J.1
Ellegren, H.2
-
69
-
-
0001876747
-
Algorithm AS159. An efficient method of generating r x c tables with given row and column totals
-
Patefield WM, (1981) algorithm AS159. An efficient method of generating r x c tables with given row and column totals. Applied Statistics, 30, 91-97.
-
(1981)
Applied Statistics
, vol.30
, pp. 91-97
-
-
Patefield, W.M.1
-
70
-
-
84899564793
-
The ontogeny and evolution of sex-biased gene expression in Drosophila melanogaster
-
Perry JC, Harrison PW, Mank JE, (2014) The ontogeny and evolution of sex-biased gene expression in Drosophila melanogaster. Molecular Biology and Evolution, 31, 1206-1219.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 1206-1219
-
-
Perry, J.C.1
Harrison, P.W.2
Mank, J.E.3
-
71
-
-
0033539121
-
Peacocks lek with relatives even in the absence of social and environmental cues
-
Petrie M, Krupa A, Burke T, (1999) Peacocks lek with relatives even in the absence of social and environmental cues. Nature, 401, 155-157.
-
(1999)
Nature
, vol.401
, pp. 155-157
-
-
Petrie, M.1
Krupa, A.2
Burke, T.3
-
72
-
-
18544375637
-
Sperm competition and the evolution of testes size in birds
-
Pitcher TE, Dunn PO, Whittingham LA, (2005) Sperm competition and the evolution of testes size in birds. Journal of Evolutionary Biology, 18, 557-567.
-
(2005)
Journal of Evolutionary Biology
, vol.18
, pp. 557-567
-
-
Pitcher, T.E.1
Dunn, P.O.2
Whittingham, L.A.3
-
73
-
-
84884653636
-
Masculinization of gene expression is associated with exaggeration of male sexual dimorphism
-
Pointer MA, Harrison PW, Wright AE, Mank JE, (2013) Masculinization of gene expression is associated with exaggeration of male sexual dimorphism. PLoS Genetics, 9, 1-9.
-
(2013)
PLoS Genetics
, vol.9
, pp. 1-9
-
-
Pointer, M.A.1
Harrison, P.W.2
Wright, A.E.3
Mank, J.E.4
-
74
-
-
36549065630
-
Population size changes reshape genomic patterns of diversity
-
Pool JE, Nielsen R, (2007) Population size changes reshape genomic patterns of diversity. Evolution, 63, 3001-3006.
-
(2007)
Evolution
, vol.63
, pp. 3001-3006
-
-
Pool, J.E.1
Nielsen, R.2
-
75
-
-
84875451981
-
Development of strategies for SNP detection in RNA-Seq data: Application to lymphoblastoid cell lines and evaluation using 1000 genomes data
-
Quinn EM, Cormican P, Kenny EM, et al,. (2013) Development of strategies for SNP detection in RNA-Seq data: Application to lymphoblastoid cell lines and evaluation using 1000 genomes data. PLoS One, 8, e58815.
-
(2013)
PLoS One
, vol.8
, pp. e58815
-
-
Quinn, E.M.1
Cormican, P.2
Kenny, E.M.3
-
76
-
-
84863304598
-
-
R Core Team. R Foundation for Statistical Computing, Vienna, Austria. URL
-
R Core Team (2014) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
77
-
-
38349134018
-
Sexual selection and the adaptive evolution of Mammalian ejaculate proteins
-
Ramm SA, Oliver PL, Ponting CP, Stockley P, Emes RD, (2008) Sexual selection and the adaptive evolution of Mammalian ejaculate proteins. Molecular Biology and Evolution, 25, 207-219.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 207-219
-
-
Ramm, S.A.1
Oliver, P.L.2
Ponting, C.P.3
Stockley, P.4
Emes, R.D.5
-
78
-
-
0037417887
-
Genetic biases for showy males: Are some genetic systems especially conducive to sexual selection?
-
Reeve HK, Pfennig DW, (2003) Genetic biases for showy males: are some genetic systems especially conducive to sexual selection? Proceedings of the National Academy of Sciences of the USA, 100, 1089-1094.
-
(2003)
Proceedings of the National Academy of Sciences of the USA
, vol.100
, pp. 1089-1094
-
-
Reeve, H.K.1
Pfennig, D.W.2
-
79
-
-
0021554565
-
Sex chromosomes and the evolution of sexual dimorphism
-
Rice WR, (1984) Sex chromosomes and the evolution of sexual dimorphism. Evolution, 38, 735-742.
-
(1984)
Evolution
, vol.38
, pp. 735-742
-
-
Rice, W.R.1
-
80
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson MD, Oshlack A, (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biology, 11, R25.
-
(2010)
Genome Biology
, vol.11
, pp. R25
-
-
Robinson, M.D.1
Oshlack, A.2
-
81
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
82
-
-
0034119689
-
Close relatedness between mitochondrial DNA from seven Anser goose species
-
Ruokonen M, Kvist L, Lumme J, (2000) Close relatedness between mitochondrial DNA from seven Anser goose species. Journal of Evolutionary Biology, 13, 532-540.
-
(2000)
Journal of Evolutionary Biology
, vol.13
, pp. 532-540
-
-
Ruokonen, M.1
Kvist, L.2
Lumme, J.3
-
83
-
-
84905373159
-
Positive selection drives Faster-Z evolution in silkmoths
-
Sackton TB, Corbett-Detig RB, Nagaraju J, Vaishna L, Arunkumar KP, Hartl DL, (2014) Positive selection drives Faster-Z evolution in silkmoths. Evolution, 68, 2331-2342.
-
(2014)
Evolution
, vol.68
, pp. 2331-2342
-
-
Sackton, T.B.1
Corbett-Detig, R.B.2
Nagaraju, J.3
Vaishna, L.4
Arunkumar, K.P.5
Hartl, D.L.6
-
84
-
-
35148885655
-
Sex chromosome-linked species recognition and evolution of reproductive isolation in flycatchers
-
Saether SA, Saetre G-P, Borge T, et al,. (2007) Sex chromosome-linked species recognition and evolution of reproductive isolation in flycatchers. Science, 318, 95-97.
-
(2007)
Science
, vol.318
, pp. 95-97
-
-
Saether, S.A.1
Saetre, G.-P.2
Borge, T.3
-
85
-
-
0038660998
-
Sex chromosome evolution and speciation in Ficedula flycatchers
-
Saetre GP, Borge T, Lindroos K, et al,. (2003) Sex chromosome evolution and speciation in Ficedula flycatchers. Proceedings of the Royal Society B-Biological Sciences, 270, 53-59.
-
(2003)
Proceedings of the Royal Society B-Biological Sciences
, vol.270
, pp. 53-59
-
-
Saetre, G.P.1
Borge, T.2
Lindroos, K.3
-
86
-
-
84855287897
-
QTL linkage mapping of zebra finch beak color shows an oligogenic control of a sexually selected trait
-
Schielzeth H, Kempenaers B, Ellegren H, Forstmeier W, (2012) QTL linkage mapping of zebra finch beak color shows an oligogenic control of a sexually selected trait. Evolution, 66, 18-30.
-
(2012)
Evolution
, vol.66
, pp. 18-30
-
-
Schielzeth, H.1
Kempenaers, B.2
Ellegren, H.3
Forstmeier, W.4
-
87
-
-
38949208249
-
Constrasting the efficacy of selection on the X and autosomes in Drosophila
-
Singh N, Larracuente A, Clark A, (2008) Constrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution, 25, 454-467.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 454-467
-
-
Singh, N.1
Larracuente, A.2
Clark, A.3
-
88
-
-
69249212381
-
Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis
-
Skinner BM, Robertson LBW, Tempest HG, et al,. (2009) Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis. BMC Genomics, 10, 357.
-
(2009)
BMC Genomics
, vol.10
, pp. 357
-
-
Skinner, B.M.1
Robertson, L.B.W.2
Tempest, H.G.3
-
89
-
-
34547632727
-
A new look at the evolution of avian sex chromosomes
-
Stiglec R, Ezaz T, Graves JAM, (2007) A new look at the evolution of avian sex chromosomes. Cytogenetic and Genome Research, 117, 103-109.
-
(2007)
Cytogenetic and Genome Research
, vol.117
, pp. 103-109
-
-
Stiglec, R.1
Ezaz, T.2
Graves, J.A.M.3
-
90
-
-
12344256065
-
Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster
-
Thornton K, Long M, (2005) Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster. Molecular Biology and Evolution, 22, 273-284.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 273-284
-
-
Thornton, K.1
Long, M.2
-
91
-
-
84859116646
-
No excess gene movement is detected off the avian or lepidopteran Z chromosome
-
Toups MA, Pease JB, Hahn MW, (2011) No excess gene movement is detected off the avian or lepidopteran Z chromosome. Genome Biology and Evolution, 3, 1381-1390.
-
(2011)
Genome Biology and Evolution
, vol.3
, pp. 1381-1390
-
-
Toups, M.A.1
Pease, J.B.2
Hahn, M.W.3
-
92
-
-
0347093513
-
Calibration of galliform molecular clocks using multiple fossils and genetic partitions
-
van Tuinen M, Dyke GJ, (2004) Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Molecular Phylogenetics and Evolution, 30, 74-86.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.30
, pp. 74-86
-
-
Van Tuinen, M.1
Dyke, G.J.2
-
94
-
-
84891638603
-
Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers
-
Uebbing S, Künstner A, Mäkinen H, Ellegren H, (2013) Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers. Genome Biology and Evolution, 5, 1555-1566.
-
(2013)
Genome Biology and Evolution
, vol.5
, pp. 1555-1566
-
-
Uebbing, S.1
Künstner, A.2
Mäkinen, H.3
Ellegren, H.4
-
95
-
-
69249173100
-
Effective population size and the Faster-X effect: An extended model
-
Vicoso B, Charlesworth B, (2009) Effective population size and the Faster-X effect: an extended model. Evolution, 63, 2413-2426.
-
(2009)
Evolution
, vol.63
, pp. 2413-2426
-
-
Vicoso, B.1
Charlesworth, B.2
-
96
-
-
84883197915
-
Comparative sex chromosome genomics in snakes: Differentiation, evolutionary strata, and lack of global dosage compensation
-
Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D, (2013a) Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. PLoS Biology, 11, e1001643.
-
(2013)
PLoS Biology
, vol.11
, pp. e1001643
-
-
Vicoso, B.1
Emerson, J.J.2
Zektser, Y.3
Mahajan, S.4
Bachtrog, D.5
-
97
-
-
84876262163
-
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution
-
Vicoso B, Kaiser VB, Bachtrog D, (2013b) Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution. Proceedings of the National Academy of Sciences of the USA, 110, 6453-6458.
-
(2013)
Proceedings of the National Academy of Sciences of the USA
, vol.110
, pp. 6453-6458
-
-
Vicoso, B.1
Kaiser, V.B.2
Bachtrog, D.3
-
98
-
-
84899476884
-
Whole genome sequencing of the black grouse (Tetrao tetrix): Reference guided assembly suggests faster-Z and MHC evolution
-
Wang B, Ekblom R, Bunikis I, Siitari H, Hoglund J, (2014a) Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution. BMC Genomics, 15, 180.
-
(2014)
BMC Genomics
, vol.15
, pp. 180
-
-
Wang, B.1
Ekblom, R.2
Bunikis, I.3
Siitari, H.4
Hoglund, J.5
-
99
-
-
84923902306
-
Temporal genomic evolution of bird sex chromosomes
-
Wang Z, Zhang J, Yang W, et al,. (2014b) Temporal genomic evolution of bird sex chromosomes. BMC Evolutionary Biology, 14, 250.
-
(2014)
BMC Evolutionary Biology
, vol.14
, pp. 250
-
-
Wang, Z.1
Zhang, J.2
Yang, W.3
-
100
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theoretical Population Biology, 7, 256-276.
-
(1975)
Theoretical Population Biology
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
101
-
-
84882698428
-
The scope and strength of sex-specific selection in genome evolution
-
Wright AE, Mank JE, (2013) The scope and strength of sex-specific selection in genome evolution. Journal of Evolutionary Biology, 26, 1841-1853.
-
(2013)
Journal of Evolutionary Biology
, vol.26
, pp. 1841-1853
-
-
Wright, A.E.1
Mank, J.E.2
-
102
-
-
84861700113
-
Lineage-specific variation in slow- and fast-X evolution in primates
-
Xu K, Oh S, Park T, Presgraves DC, Yi SV, (2012) Lineage-specific variation in slow- and fast-X evolution in primates. Evolution, 66, 1751-1761.
-
(2012)
Evolution
, vol.66
, pp. 1751-1761
-
-
Xu, K.1
Oh, S.2
Park, T.3
Presgraves, D.C.4
Yi, S.V.5
-
103
-
-
34547803197
-
Paml 4: Phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) paml 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
|