메뉴 건너뛰기




Volumn 10, Issue 7, 2015, Pages 1122-1134

HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HETEROCHROMATIN PROTEIN 1; MESSENGER RNA; DNA (CYTOSINE 5) METHYLTRANSFERASE; DNA (CYTOSINE-5-)-METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE 3A; DNA METHYLTRANSFERASE 3B; HETEROCHROMATIN-SPECIFIC NONHISTONE CHROMOSOMAL PROTEIN HP-1; NONHISTONE PROTEIN; RNA BINDING PROTEIN; SMALL INTERFERING RNA; SRSF3 PROTEIN, MOUSE;

EID: 84924578243     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2015.01.038     Document Type: Article
Times cited : (164)

References (54)
  • 7
    • 84899001236 scopus 로고    scopus 로고
    • IRAK1: oncotarget in MDS and AML
    • Beverly L.J., Starczynowski D.T. IRAK1: oncotarget in MDS and AML. Oncotarget 2014, 5:1699-1700.
    • (2014) Oncotarget , vol.5 , pp. 1699-1700
    • Beverly, L.J.1    Starczynowski, D.T.2
  • 8
    • 0038401969 scopus 로고    scopus 로고
    • Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity
    • Cáceres J.F., Misteli T., Screaton G.R., Spector D.L., Krainer A.R. Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity. J.Cell Biol. 1997, 138:225-238.
    • (1997) J.Cell Biol. , vol.138 , pp. 225-238
    • Cáceres, J.F.1    Misteli, T.2    Screaton, G.R.3    Spector, D.L.4    Krainer, A.R.5
  • 12
    • 0033180615 scopus 로고    scopus 로고
    • Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer
    • Cramer P., Cáceres J.F., Cazalla D., Kadener S., Muro A.F., Baralle F.E., Kornblihtt A.R. Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer. Mol. Cell 1999, 4:251-258.
    • (1999) Mol. Cell , vol.4 , pp. 251-258
    • Cramer, P.1    Cáceres, J.F.2    Cazalla, D.3    Kadener, S.4    Muro, A.F.5    Baralle, F.E.6    Kornblihtt, A.R.7
  • 13
    • 78049416081 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged
    • David C.J., Manley J.L. Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev. 2010, 24:2343-2364.
    • (2010) Genes Dev. , vol.24 , pp. 2343-2364
    • David, C.J.1    Manley, J.L.2
  • 14
    • 33750596100 scopus 로고    scopus 로고
    • RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20
    • de la Mata M., Kornblihtt A.R. RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20. Nat. Struct. Mol. Biol. 2006, 13:973-980.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 973-980
    • de la Mata, M.1    Kornblihtt, A.R.2
  • 15
  • 16
    • 84877108379 scopus 로고    scopus 로고
    • DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure
    • Gelfman S., Cohen N., Yearim A., Ast G. DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure. Genome Res. 2013, 23:789-799.
    • (2013) Genome Res. , vol.23 , pp. 789-799
    • Gelfman, S.1    Cohen, N.2    Yearim, A.3    Ast, G.4
  • 17
    • 0038243168 scopus 로고    scopus 로고
    • The role of DNA methylation in setting up chromatin structure during development
    • Hashimshony T., Zhang J., Keshet I., Bustin M., Cedar H. The role of DNA methylation in setting up chromatin structure during development. Nat. Genet. 2003, 34:187-192.
    • (2003) Nat. Genet. , vol.34 , pp. 187-192
    • Hashimshony, T.1    Zhang, J.2    Keshet, I.3    Bustin, M.4    Cedar, H.5
  • 20
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 22
    • 84896324622 scopus 로고    scopus 로고
    • Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes
    • Huff J.T., Zilberman D. Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes. Cell 2014, 156:1286-1297.
    • (2014) Cell , vol.156 , pp. 1286-1297
    • Huff, J.T.1    Zilberman, D.2
  • 23
    • 84889081371 scopus 로고    scopus 로고
    • Chromatin's thread to alternative splicing regulation
    • Iannone C., Valcárcel J. Chromatin's thread to alternative splicing regulation. Chromosoma 2013, 122:465-474.
    • (2013) Chromosoma , vol.122 , pp. 465-474
    • Iannone, C.1    Valcárcel, J.2
  • 24
    • 0037086355 scopus 로고    scopus 로고
    • Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail
    • Jacobs S.A., Khorasanizadeh S. Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail. Science 2002, 295:2080-2083.
    • (2002) Science , vol.295 , pp. 2080-2083
    • Jacobs, S.A.1    Khorasanizadeh, S.2
  • 26
    • 33644542406 scopus 로고    scopus 로고
    • Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays
    • Li C., Kato M., Shiue L., Shively J.E., Ares M., Lin R.J. Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays. Cancer Res. 2006, 66:1990-1999.
    • (2006) Cancer Res. , vol.66 , pp. 1990-1999
    • Li, C.1    Kato, M.2    Shiue, L.3    Shively, J.E.4    Ares, M.5    Lin, R.J.6
  • 29
    • 60549110477 scopus 로고    scopus 로고
    • Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation
    • Loomis R.J., Naoe Y., Parker J.B., Savic V., Bozovsky M.R., Macfarlan T., Manley J.L., Chakravarti D. Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. Mol. Cell 2009, 33:450-461.
    • (2009) Mol. Cell , vol.33 , pp. 450-461
    • Loomis, R.J.1    Naoe, Y.2    Parker, J.B.3    Savic, V.4    Bozovsky, M.R.5    Macfarlan, T.6    Manley, J.L.7    Chakravarti, D.8
  • 31
    • 78649955848 scopus 로고    scopus 로고
    • The honey bee epigenomes: differential methylation of brain DNA in queens and workers
    • Lyko F., Foret S., Kucharski R., Wolf S., Falckenhayn C., Maleszka R. The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol. 2010, 8:e1000506.
    • (2010) PLoS Biol. , vol.8
    • Lyko, F.1    Foret, S.2    Kucharski, R.3    Wolf, S.4    Falckenhayn, C.5    Maleszka, R.6
  • 33
    • 84887214395 scopus 로고    scopus 로고
    • Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
    • Maunakea A.K., Chepelev I., Cui K., Zhao K. Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. Cell Res. 2013, 23:1256-1269.
    • (2013) Cell Res. , vol.23 , pp. 1256-1269
    • Maunakea, A.K.1    Chepelev, I.2    Cui, K.3    Zhao, K.4
  • 36
    • 0036775704 scopus 로고    scopus 로고
    • Coordinated methyl and RNA binding is required for heterochromatin localization of mammalian HP1alpha
    • Muchardt C., Guilleme M., Seeler J.S., Trouche D., Dejean A., Yaniv M. Coordinated methyl and RNA binding is required for heterochromatin localization of mammalian HP1alpha. EMBO Rep. 2002, 3:975-981.
    • (2002) EMBO Rep. , vol.3 , pp. 975-981
    • Muchardt, C.1    Guilleme, M.2    Seeler, J.S.3    Trouche, D.4    Dejean, A.5    Yaniv, M.6
  • 38
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan Q., Shai O., Lee L.J., Frey B.J., Blencowe B.J. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 2008, 40:1413-1415.
    • (2008) Nat. Genet. , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 39
    • 73449102588 scopus 로고    scopus 로고
    • Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila
    • Piacentini L., Fanti L., Negri R., Del Vescovo V., Fatica A., Altieri F., Pimpinelli S. Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila. PLoS Genet. 2009, 5:e1000670.
    • (2009) PLoS Genet. , vol.5
    • Piacentini, L.1    Fanti, L.2    Negri, R.3    Del Vescovo, V.4    Fatica, A.5    Altieri, F.6    Pimpinelli, S.7
  • 40
    • 84863654457 scopus 로고    scopus 로고
    • Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
    • Pradeepa M.M., Sutherland H.G., Ule J., Grimes G.R., Bickmore W.A. Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. PLoS Genet. 2012, 8:e1002717.
    • (2012) PLoS Genet. , vol.8
    • Pradeepa, M.M.1    Sutherland, H.G.2    Ule, J.3    Grimes, G.R.4    Bickmore, W.A.5
  • 43
    • 79952364016 scopus 로고    scopus 로고
    • Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
    • Saint-André V., Batsché E., Rachez C., Muchardt C. Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons. Nat. Struct. Mol. Biol. 2011, 18:337-344.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 337-344
    • Saint-André, V.1    Batsché, E.2    Rachez, C.3    Muchardt, C.4
  • 44
    • 84882452116 scopus 로고    scopus 로고
    • Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation
    • Schor I.E., Fiszbein A., Petrillo E., Kornblihtt A.R. Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation. EMBO J. 2013, 32:2264-2274.
    • (2013) EMBO J. , vol.32 , pp. 2264-2274
    • Schor, I.E.1    Fiszbein, A.2    Petrillo, E.3    Kornblihtt, A.R.4
  • 45
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • Schwartz S., Meshorer E., Ast G. Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol. 2009, 16:990-995.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 47
    • 36249027156 scopus 로고    scopus 로고
    • Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
    • Sims R.J., Millhouse S., Chen C.F., Lewis B.A., Erdjument-Bromage H., Tempst P., Manley J.L., Reinberg D. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell 2007, 28:665-676.
    • (2007) Mol. Cell , vol.28 , pp. 665-676
    • Sims, R.J.1    Millhouse, S.2    Chen, C.F.3    Lewis, B.A.4    Erdjument-Bromage, H.5    Tempst, P.6    Manley, J.L.7    Reinberg, D.8
  • 49
    • 84874194072 scopus 로고    scopus 로고
    • DNA methylation: roles in mammalian development
    • Smith Z.D., Meissner A. DNA methylation: roles in mammalian development. Nat. Rev. Genet. 2013, 14:204-220.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 204-220
    • Smith, Z.D.1    Meissner, A.2
  • 50
    • 58249120513 scopus 로고    scopus 로고
    • Heterochromatin protein 1gamma epigenetically regulates cell differentiation and exhibits potential as a therapeutic target for various types of cancers
    • Takanashi M., Oikawa K., Fujita K., Kudo M., Kinoshita M., Kuroda M. Heterochromatin protein 1gamma epigenetically regulates cell differentiation and exhibits potential as a therapeutic target for various types of cancers. Am. J. Pathol. 2009, 174:309-316.
    • (2009) Am. J. Pathol. , vol.174 , pp. 309-316
    • Takanashi, M.1    Oikawa, K.2    Fujita, K.3    Kudo, M.4    Kinoshita, M.5    Kuroda, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.