-
1
-
-
33745225414
-
Bug juice: Harvesting electricity with microorganisms
-
Lovley, D. R. Bug juice: harvesting electricity with microorganisms Nat. Rev. Microbiol. 2006, 4 (7) 497-508
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, Issue.7
, pp. 497-508
-
-
Lovley, D.R.1
-
2
-
-
82555168002
-
Live wires: Direct extracellular electron exchange for bioenergy and the bioremediation of energy-related contamination
-
Lovley, D. R. Live wires: direct extracellular electron exchange for bioenergy and the bioremediation of energy-related contamination Energy Environ. Sci. 2011, 4 (12) 4896-4906
-
(2011)
Energy Environ. Sci.
, vol.4
, Issue.12
, pp. 4896-4906
-
-
Lovley, D.R.1
-
3
-
-
70349932972
-
Proteogenomic monitoring of geobacter physiology during stimulated uranium bioremediation
-
Wilkins, M. J.; VerBerkmoes, N. C.; Williams, K. H.; Callister, S. J.; Mouser, P. J.; Elifantz, H. Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation Appl. Environ. Microbiol. 2009, 75 (20) 6591-6599
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, Issue.20
, pp. 6591-6599
-
-
Wilkins, M.J.1
VerBerkmoes, N.C.2
Williams, K.H.3
Callister, S.J.4
Mouser, P.J.5
Elifantz, H.6
-
4
-
-
78650267487
-
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles
-
Callister, S. J.; Wilkins, M. J.; Nicora, C. D.; Williams, K. H.; Banfield, J. F.; VerBerkmoes, N. C. Analysis of Biostimulated Microbial Communities from Two Field Experiments Reveals Temporal and Spatial Differences in Proteome Profiles Environ. Sci. Technol. 2010, 44 (23) 8897-8903
-
(2010)
Environ. Sci. Technol.
, vol.44
, Issue.23
, pp. 8897-8903
-
-
Callister, S.J.1
Wilkins, M.J.2
Nicora, C.D.3
Williams, K.H.4
Banfield, J.F.5
Verberkmoes, N.C.6
-
5
-
-
10744231694
-
Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
-
Anderson, R. T.; Vrionis, H. A.; Ortiz-Bernad, I.; Resch, C. T.; Long, P. E.; Dayvault, R. Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer Appl. Environ. Microbiol. 2003, 69 (10) 5884-5891
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, Issue.10
, pp. 5884-5891
-
-
Anderson, R.T.1
Vrionis, H.A.2
Ortiz-Bernad, I.3
Resch, C.T.4
Long, P.E.5
Dayvault, R.6
-
6
-
-
79751531838
-
Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens
-
Qian, X.; Mester, T.; Morgado, L.; Arakawa, T.; Sharma, M. L.; Inoue, K. Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens Biochim. Biophys. Acta 2011, 1807 (4) 404-412
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, Issue.4
, pp. 404-412
-
-
Qian, X.1
Mester, T.2
Morgado, L.3
Arakawa, T.4
Sharma, M.L.5
Inoue, K.6
-
7
-
-
77950283289
-
Role of Geobacter sulfurreducens outer surface c-type cytochromes in reduction of soil humic acid and anthraquinone-2,6-disulfonate
-
Voordeckers, J. W.; Kim, B. C.; Izallalen, M.; Lovley, D. R. Role of Geobacter sulfurreducens Outer Surface c-Type Cytochromes in Reduction of Soil Humic Acid and Anthraquinone-2,6-Disulfonate Appl. Environ. Microbiol. 2010, 76 (7) 2371-2375
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, Issue.7
, pp. 2371-2375
-
-
Voordeckers, J.W.1
Kim, B.C.2
Izallalen, M.3
Lovley, D.R.4
-
8
-
-
77953637460
-
Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens
-
Inoue, K.; Qian, X. L.; Morgado, L.; Kim, B. C.; Mester, T.; Izallalen, M. Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens Appl. Environ. Microbiol. 2010, 76 (12) 3999-4007
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, Issue.12
, pp. 3999-4007
-
-
Inoue, K.1
Qian, X.L.2
Morgado, L.3
Kim, B.C.4
Mester, T.5
Izallalen, M.6
-
9
-
-
84924383662
-
OmcZ, a mobile, extracellular, c-type cytochrome that accumulates at the anode in current-producing biofilms of Geobacter sulfurreducens
-
Inoue, K.; Franks, A. E.; Nevin, K. P.; Lovley, D. R. OmcZ, a mobile, extracellular, c-type cytochrome that accumulates at the anode in current-producing biofilms of Geobacter sulfurreducens. Abstr. Pap. Am. Chem. Soc. 2010, 239.
-
(2010)
Abstr. Pap. Am. Chem. Soc.
, vol.239
-
-
Inoue, K.1
Franks, A.E.2
Nevin, K.P.3
Lovley, D.R.4
-
10
-
-
46249094501
-
Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes
-
Holmes, D. E.; Mester, T.; O'Neil, R. A.; Perpetua, L. A.; Larrahondo, M. J.; Glaven, R. Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes Microbiology 2008, 154 (5) 1422-1435
-
(2008)
Microbiology
, vol.154
, Issue.5
, pp. 1422-1435
-
-
Holmes, D.E.1
Mester, T.2
O'Neil, R.A.3
Perpetua, L.A.4
Larrahondo, M.J.5
Glaven, R.6
-
11
-
-
29144451480
-
Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens
-
Mehta, T.; Coppi, M. V.; Childers, S. E.; Lovley, D. R. Outer Membrane c-Type Cytochromes Required for Fe(III) and Mn(IV) Oxide Reduction in Geobacter sulfurreducens Appl. Environ. Microbiol. 2005, 71 (12) 8634-8641
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.12
, pp. 8634-8641
-
-
Mehta, T.1
Coppi, M.V.2
Childers, S.E.3
Lovley, D.R.4
-
12
-
-
21144443141
-
OmcF, a putative c-type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens
-
Kim, B.-C.; Leang, C.; Ding, Y.-H. R.; Glaven, R. H.; Coppi, M. V.; Lovley, D. R. OmcF, a Putative c-Type Monoheme Outer Membrane Cytochrome Required for the Expression of Other Outer Membrane Cytochromes in Geobacter sulfurreducens J. Bacteriol. 2005, 187 (13) 4505-4513
-
(2005)
J. Bacteriol.
, vol.187
, Issue.13
, pp. 4505-4513
-
-
Kim, B.-C.1
Leang, C.2
Ding, Y.-H.R.3
Glaven, R.H.4
Coppi, M.V.5
Lovley, D.R.6
-
13
-
-
0037266296
-
Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens
-
Lloyd, J. R.; Leang, C.; Hodges Myerson, A. L.; Coppi, M. V.; Cuifo, S.; Methe, B. Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens Biochem. J. 2003, 369 (1) 153-161
-
(2003)
Biochem. J.
, vol.369
, Issue.1
, pp. 153-161
-
-
Lloyd, J.R.1
Leang, C.2
Hodges Myerson, A.L.3
Coppi, M.V.4
Cuifo, S.5
Methe, B.6
-
14
-
-
0037379469
-
OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens
-
Leang, C.; Coppi, M. V.; Lovley, D. R. OmcB, a c-Type Polyheme Cytochrome, Involved in Fe(III) Reduction in Geobacter sulfurreducens J. Bacteriol. 2003, 185 (7) 2096-2103
-
(2003)
J. Bacteriol.
, vol.185
, Issue.7
, pp. 2096-2103
-
-
Leang, C.1
Coppi, M.V.2
Lovley, D.R.3
-
15
-
-
77956470482
-
The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments
-
Aklujkar, M.; Young, N.; Holmes, D.; Chavan, M.; Risso, C.; Kiss, H. The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments BMC Genomics 2010, 11 (1) 490
-
(2010)
BMC Genomics
, vol.11
, Issue.1
, pp. 490
-
-
Aklujkar, M.1
Young, N.2
Holmes, D.3
Chavan, M.4
Risso, C.5
Kiss, H.6
-
16
-
-
0034661893
-
Utility of accurate mass tags for proteome-wide protein identification
-
Conrads, T. P.; Anderson, G. A.; Veenstra, T. D.; Paša-Tolić, L.; Smith, R. D. Utility of Accurate Mass Tags for Proteome-Wide Protein Identification Anal. Chem. 2000, 72 (14) 3349-3354
-
(2000)
Anal. Chem.
, vol.72
, Issue.14
, pp. 3349-3354
-
-
Conrads, T.P.1
Anderson, G.A.2
Veenstra, T.D.3
Paša-Tolić, L.4
Smith, R.D.5
-
17
-
-
0036253914
-
An accurate mass tag strategy for quantitative and high-throughput proteome measurements
-
Smith, R. D.; Anderson, G. A.; Lipton, M. S.; Pasa-Tolic, L.; Shen, Y.; Conrads, T. P. An accurate mass tag strategy for quantitative and high-throughput proteome measurements PROTEOMICS 2002, 2 (5) 513-523
-
(2002)
PROTEOMICS
, vol.2
, Issue.5
, pp. 513-523
-
-
Smith, R.D.1
Anderson, G.A.2
Lipton, M.S.3
Pasa-Tolic, L.4
Shen, Y.5
Conrads, T.P.6
-
18
-
-
33750743755
-
Robust Algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline
-
Jaitly, N.; Monroe, M. E.; Petyuk, V. A.; Clauss, T. R. W.; Adkins, J. N.; Smith, R. D. Robust Algorithm for Alignment of Liquid Chromatography-Mass Spectrometry Analyses in an Accurate Mass and Time Tag Data Analysis Pipeline Anal. Chem. 2006, 78 (21) 7397-7409
-
(2006)
Anal. Chem.
, vol.78
, Issue.21
, pp. 7397-7409
-
-
Jaitly, N.1
Monroe, M.E.2
Petyuk, V.A.3
Clauss, T.R.W.4
Adkins, J.N.5
Smith, R.D.6
-
19
-
-
84874637810
-
Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface
-
Wilkins, M. J.; Wrighton, K. C.; Nicora, C. D.; Williams, K. H.; McCue, L. A.; Handley, K. M. Fluctuations in Species-Level Protein Expression Occur during Element and Nutrient Cycling in the Subsurface PLoS One 2013, 8 (3) 11
-
(2013)
PLoS One
, vol.8
, Issue.3
, pp. 11
-
-
Wilkins, M.J.1
Wrighton, K.C.2
Nicora, C.D.3
Williams, K.H.4
Mccue, L.A.5
Handley, K.M.6
-
20
-
-
0019707416
-
Sorption of inorganic phosphate by iron- and aluminium- containing components
-
McLaughlin, J. R.; Ryden, J. C.; Syers, J. K. Sorption of Inorganic Phosphate by Iron- and Aluminium- Containing Components J. Soil Sci. 1981, 32 (3) 365-378
-
(1981)
J. Soil Sci.
, vol.32
, Issue.3
, pp. 365-378
-
-
Mclaughlin, J.R.1
Ryden, J.C.2
Syers, J.K.3
-
21
-
-
33745933823
-
Controlled growth of alpha-FeOOH nanorods by exploiting-oriented aggregation
-
Penn, R. L.; Erbs, J. J.; Gulliver, D. M. Controlled growth of alpha-FeOOH nanorods by exploiting-oriented aggregation J. Cryst. Growth 2006, 293 (1) 1-4
-
(2006)
J. Cryst. Growth
, vol.293
, Issue.1
, pp. 1-4
-
-
Penn, R.L.1
Erbs, J.J.2
Gulliver, D.M.3
-
22
-
-
84882800060
-
A disordered nanoparticle model for 6-line ferrihydrite
-
Gilbert, B.; Erbs, J. J.; Penn, R. L.; Petkov, V.; Spagnoli, D.; Waychunas, G. A. A disordered nanoparticle model for 6-line ferrihydrite Am. Mineral. 2013, 98 (8-9) 1465-1476
-
(2013)
Am. Mineral.
, vol.98
, Issue.89
, pp. 1465-1476
-
-
Gilbert, B.1
Erbs, J.J.2
Penn, R.L.3
Petkov, V.4
Spagnoli, D.5
Waychunas, G.A.6
-
23
-
-
0024191542
-
Novel mode of microbial energy metabolism: Organic carbon oxidation coupled to dissimilatory reduction of iron or manganese
-
Lovley, D. R.; Phillips, E. J. P. Novel Mode of Microbial Energy Metabolism: Organic Carbon Oxidation Coupled to Dissimilatory Reduction of Iron or Manganese Appl. Environ. Microbiol. 1988, 54 (6) 1472-1480
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, Issue.6
, pp. 1472-1480
-
-
Lovley, D.R.1
Phillips, E.J.P.2
-
24
-
-
83155163702
-
Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell
-
Wrighton, K. C.; Thrash, J. C.; Melnyk, R. A.; Bigi, J. P.; Byrne-Bailey, K. G.; Remis, J. P. Evidence for Direct Electron Transfer by a Gram-Positive Bacterium Isolated from a Microbial Fuel Cell Appl. Environ. Microbiol. 2011, 77 (21) 7633-7639
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, Issue.21
, pp. 7633-7639
-
-
Wrighton, K.C.1
Thrash, J.C.2
Melnyk, R.A.3
Bigi, J.P.4
Byrne-Bailey, K.G.5
Remis, J.P.6
-
25
-
-
0032468301
-
Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium
-
Fredrickson, J. K.; Zachara, J. M.; Kennedy, D. W.; Dong, H.; Onstott, T. C.; Hinman, N. W. Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium Geochim. Cosmochim. Acta 1998, 62 (19-20) 3239-3257
-
(1998)
Geochim. Cosmochim. Acta
, vol.62
, Issue.1920
, pp. 3239-3257
-
-
Fredrickson, J.K.1
Zachara, J.M.2
Kennedy, D.W.3
Dong, H.4
Onstott, T.C.5
Hinman, N.W.6
-
26
-
-
0000816704
-
Rapid assay for microbially reducible ferric iron in aquatic sediments
-
Lovley, D. R.; Phillips, E. J. P. Rapid Assay for Microbially Reducible Ferric Iron in Aquatic Sediments Appl. Environ. Microbiol. 1987, 53 (7) 1536-1540
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, Issue.7
, pp. 1536-1540
-
-
Lovley, D.R.1
Phillips, E.J.P.2
-
27
-
-
84982340866
-
Differenzierung der eisenoxide des bodens durch extraktion mit ammoniumoxalat-lösung
-
Schwertmann, U. Differenzierung der Eisenoxide des Bodens durch Extraktion mit Ammoniumoxalat-Lösung Z. Pflanzenernährung, Düngung, Bodenkunde 1964, 105 (3) 194-202
-
(1964)
Z. Pflanzenernährung, Düngung, Bodenkunde
, vol.105
, Issue.3
, pp. 194-202
-
-
Schwertmann, U.1
-
28
-
-
0017170673
-
An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels
-
Thomas, P. E.; Ryan, D.; Levin, W. An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels Anal. Biochem. 1976, 75 (1) 168-176
-
(1976)
Anal. Biochem.
, vol.75
, Issue.1
, pp. 168-176
-
-
Thomas, P.E.1
Ryan, D.2
Levin, W.3
-
29
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M. In-gel digestion for mass spectrometric characterization of proteins and proteomes Nat. Protocols 2007, 1 (6) 2856-2860
-
(2007)
Nat. Protocols
, vol.1
, Issue.6
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
30
-
-
84859385670
-
High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis
-
Yang, F.; Shen, Y. F.; Camp, D. G.; Smith, R. D. High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis Expert Rev. Proteomics 2012, 9 (2) 129-134
-
(2012)
Expert Rev. Proteomics
, vol.9
, Issue.2
, pp. 129-134
-
-
Yang, F.1
Shen, Y.F.2
Camp, D.G.3
Smith, R.D.4
-
31
-
-
41149134523
-
Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses
-
Livesay, E. A.; Tang, K.; Taylor, B. K.; Buschbach, M. A.; Hopkins, D. F.; LaMarche, B. L. Fully Automated Four-Column Capillary LC-MS System for Maximizing Throughput in Proteomic Analyses Anal. Chem. 2007, 80 (1) 294-302
-
(2007)
Anal. Chem.
, vol.80
, Issue.1
, pp. 294-302
-
-
Livesay, E.A.1
Tang, K.2
Taylor, B.K.3
Buschbach, M.A.4
Hopkins, D.F.5
Lamarche, B.L.6
-
32
-
-
80051746323
-
A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics
-
Stanley, J. R.; Adkins, J. N.; Slysz, G. W.; Monroe, M. E.; Purvine, S. O.; Karpievitch, Y. V. A Statistical Method for Assessing Peptide Identification Confidence in Accurate Mass and Time Tag Proteomics Anal. Chem. 2011, 83 (16) 6135-6140
-
(2011)
Anal. Chem.
, vol.83
, Issue.16
, pp. 6135-6140
-
-
Stanley, J.R.1
Adkins, J.N.2
Slysz, G.W.3
Monroe, M.E.4
Purvine, S.O.5
Karpievitch, Y.V.6
-
33
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K.; McCormack, A. L.; Yates, J. R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 1994, 5 (11) 976-989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, Issue.11
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
34
-
-
50149117169
-
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
-
Kim, S.; Gupta, N.; Pevzner, P. A. Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases J. Proteome Res. 2008, 7 (8) 3354-3363
-
(2008)
J. Proteome Res.
, vol.7
, Issue.8
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
35
-
-
78650147228
-
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: Applications to database search
-
Kim, S.; Mischerikow, N.; Bandeira, N.; Navarro, J. D.; Wich, L.; Mohammed, S. The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search Mol. Cell. Proteomics 2010, 9 (12) 2840-2852
-
(2010)
Mol. Cell. Proteomics
, vol.9
, Issue.12
, pp. 2840-2852
-
-
Kim, S.1
Mischerikow, N.2
Bandeira, N.3
Navarro, J.D.4
Wich, L.5
Mohammed, S.6
-
36
-
-
32344442813
-
Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics
-
Callister, S. J.; Barry, R. C.; Adkins, J. N.; Johnson, E. T.; Qian, W.-j.; Webb-Robertson, B.-J. M. Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free Proteomics J. Proteome Res. 2006, 5 (2) 277-286
-
(2006)
J. Proteome Res.
, vol.5
, Issue.2
, pp. 277-286
-
-
Callister, S.J.1
Barry, R.C.2
Adkins, J.N.3
Johnson, E.T.4
Qian, W.-J.5
Webb-Robertson, B.-J.M.6
-
37
-
-
46249116675
-
DAnTE: A statistical tool for quantitative analysis of -omics data
-
Polpitiya, A. D.; Qian, W.-J.; Jaitly, N.; Petyuk, V. A.; Adkins, J. N.; Camp, D. G. DAnTE: a statistical tool for quantitative analysis of -omics data Bioinformatics 2008, 24 (13) 1556-1558
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1556-1558
-
-
Polpitiya, A.D.1
Qian, W.-J.2
Jaitly, N.3
Petyuk, V.A.4
Adkins, J.N.5
Camp, D.G.6
-
38
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J. D.; Tibshirani, R. Statistical significance for genomewide studies Proc. Natl. Acad. Sci. U. S. A. 2003, 100 (16) 9440-9445
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, Issue.16
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
39
-
-
80052519363
-
An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in methylotenera mobilis
-
Beck, D. A. C.; Hendrickson, E. L.; Vorobev, A.; Wang, T.; Lim, S.; Kalyuzhnaya, M. G. An Integrated Proteomics/Transcriptomics Approach Points to Oxygen as the Main Electron Sink for Methanol Metabolism in Methylotenera mobilis J. Bacteriol. 2011, 193 (18) 4758-4765
-
(2011)
J. Bacteriol.
, vol.193
, Issue.18
, pp. 4758-4765
-
-
Beck, D.A.C.1
Hendrickson, E.L.2
Vorobev, A.3
Wang, T.4
Lim, S.5
Kalyuzhnaya, M.G.6
-
40
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in saccharomyces cerevisiae
-
Zybailov, B.; Mosley, A. L.; Sardiu, M. E.; Coleman, M. K.; Florens, L.; Washburn, M. P. Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae J. Proteome Res. 2006, 5 (9) 2339-2347
-
(2006)
J. Proteome Res.
, vol.5
, Issue.9
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
-
41
-
-
77951650200
-
Role of spectral counting in quantitative proteomics
-
Lundgren, D. H.; Hwang, S.-I.; Wu, L.; Han, D. K. Role of spectral counting in quantitative proteomics Expert Rev. Proteomics 2010, 7 (1) 39-53
-
(2010)
Expert Rev. Proteomics
, vol.7
, Issue.1
, pp. 39-53
-
-
Lundgren, D.H.1
Hwang, S.-I.2
Wu, L.3
Han, D.K.4
-
42
-
-
84923247212
-
MS-GF+ makes progress towards a universal database search tool for proteomics
-
Kim, S.; Pevzner, P. A. MS-GF+ makes progress towards a universal database search tool for proteomics. Nat. Commun. 2014, 5.
-
(2014)
Nat. Commun.
, vol.5
-
-
Kim, S.1
Pevzner, P.A.2
-
43
-
-
54549114308
-
Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor
-
Ding, Y.-H. R.; Hixson, K. K.; Aklujkar, M. A.; Lipton, M. S.; Smith, R. D.; Lovley, D. R. Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor Biochim. Biophys. Acta 2008, 1784 (12) 1935-1941
-
(2008)
Biochim. Biophys. Acta
, vol.1784
, Issue.12
, pp. 1935-1941
-
-
Ding, Y.-H.R.1
Hixson, K.K.2
Aklujkar, M.A.3
Lipton, M.S.4
Smith, R.D.5
Lovley, D.R.6
-
44
-
-
33746072949
-
The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions
-
Ding, Y.-H. R.; Hixson, K. K.; Giometti, C. S.; Stanley, A.; Esteve-Núñez, A.; Khare, T. The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions Biochim. Biophys. Acta 2006, 1764 (7) 1198-1206
-
(2006)
Biochim. Biophys. Acta
, vol.1764
, Issue.7
, pp. 1198-1206
-
-
Ding, Y.-H.R.1
Hixson, K.K.2
Giometti, C.S.3
Stanley, A.4
Esteve-Núñez, A.5
Khare, T.6
-
45
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R.; Fedorova, N.; Jackson, J.; Jacobs, A.; Kiryutin, B.; Koonin, E. The COG database: an updated version includes eukaryotes BMC Bioinformatics 2003, 4 (1) 41
-
(2003)
BMC Bioinformatics
, vol.4
, Issue.1
, pp. 41
-
-
Tatusov, R.1
Fedorova, N.2
Jackson, J.3
Jacobs, A.4
Kiryutin, B.5
Koonin, E.6
-
46
-
-
58549102477
-
Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments
-
Holmes, D. E.; O'Neil, R. A.; Chavan, M. A.; N'Guessan, L. A.; Vrionis, H. A.; Perpetua, L. A. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments ISME J. 2008, 3 (2) 216-230
-
(2008)
ISME J.
, vol.3
, Issue.2
, pp. 216-230
-
-
Holmes, D.E.1
O'Neil, R.A.2
Chavan, M.A.3
N'Guessan, L.A.4
Vrionis, H.A.5
Perpetua, L.A.6
-
47
-
-
57049119571
-
The microbe electric: Conversion of organic matter to electricity
-
Lovley, D. R. The microbe electric: conversion of organic matter to electricity Curr. Opin. Biotechnol. 2008, 19 (6) 564-571
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, Issue.6
, pp. 564-571
-
-
Lovley, D.R.1
-
48
-
-
33645981243
-
Two putative c-type multiheme cytochromes required for the expression of OmcB, an outer membrane protein essential for optimal Fe(III) reduction in Geobacter sulfurreducens
-
Kim, B.-C.; Qian, X.; Leang, C.; Coppi, M. V.; Lovley, D. R. Two Putative c-Type Multiheme Cytochromes Required for the Expression of OmcB, an Outer Membrane Protein Essential for Optimal Fe(III) Reduction in Geobacter sulfurreducens J. Bacteriol. 2006, 188 (8) 3138-3142
-
(2006)
J. Bacteriol.
, vol.188
, Issue.8
, pp. 3138-3142
-
-
Kim, B.-C.1
Qian, X.2
Leang, C.3
Coppi, M.V.4
Lovley, D.R.5
-
49
-
-
77954199597
-
PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
Yu, N. Y.; Wagner, J. R.; Laird, M. R.; Melli, G.; Rey, S.; Lo, R. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes Bioinformatics 2010, 26 (13) 1608-1615
-
(2010)
Bioinformatics
, vol.26
, Issue.13
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
Lo, R.6
-
50
-
-
73349134931
-
Characterization of an electron conduit between bacteria and the extracellular environment
-
Hartshorne, R. S.; Reardon, C. L.; Ross, D.; Nuester, J.; Clarke, T. A.; Gates, A. J. Characterization of an electron conduit between bacteria and the extracellular environment Proc. Natl. Acad. Sci. U. S. A. 2009, 106 (52) 22169-22174
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, Issue.52
, pp. 22169-22174
-
-
Hartshorne, R.S.1
Reardon, C.L.2
Ross, D.3
Nuester, J.4
Clarke, T.A.5
Gates, A.J.6
-
51
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen, T. N.; Brunak, S.; von Heijne, G.; Nielsen, H. SignalP 4.0: discriminating signal peptides from transmembrane regions Nat. Methods 2011, 8 (10) 785-786
-
(2011)
Nat. Methods
, vol.8
, Issue.10
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
52
-
-
36849085899
-
Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments
-
Holmes, D. E.; O'Neil, R. A.; Vrionis, H. A.; N'Guessan, L. A.; Ortiz-Bernad, I.; Larrahondo, M. J. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments ISME J. 2007, 1 (8) 663-677
-
(2007)
ISME J.
, vol.1
, Issue.8
, pp. 663-677
-
-
Holmes, D.E.1
O'Neil, R.A.2
Vrionis, H.A.3
N'Guessan, L.A.4
Ortiz-Bernad, I.5
Larrahondo, M.J.6
-
53
-
-
77953645311
-
Alignment of the c-type cytochrome OmcS along Pili of Geobacter sulfurreducens
-
Leang, C.; Qian, X.; Mester, T.; Lovley, D. R. Alignment of the c-Type Cytochrome OmcS along Pili of Geobacter sulfurreducens Appl. Environ. Microbiol. 2010, 76 (12) 4080-4084
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, Issue.12
, pp. 4080-4084
-
-
Leang, C.1
Qian, X.2
Mester, T.3
Lovley, D.R.4
-
54
-
-
81855206235
-
Geobacter: The microbe electric's physiology, ecology, and practical applications
-
Robert, K. P. Academic Press: New York
-
Lovley, D. R.; Ueki, T.; Zhang, T.; Malvankar, N. S.; Shrestha, P. M.; Flanagan, K. A.;, Geobacter: The Microbe Electric's Physiology, Ecology, and Practical Applications. In Adv. Microb. Physiol.; Robert, K. P., Ed.; Academic Press: New York, 2011; Vol. 59, pp 1-100.
-
(2011)
Adv. Microb. Physiol.
, vol.59
, pp. 1-100
-
-
Lovley, D.R.1
Ueki, T.2
Zhang, T.3
Malvankar, N.S.4
Shrestha, P.M.5
Flanagan, K.A.6
-
55
-
-
20844448190
-
Characterization of purified c-type heme-containing peptides and identification of c-type heme-attachment sites in Shewanella oneidenis cytochromes using mass spectrometry
-
Yang, F.; Bogdanov, B.; Strittmatter, E. F.; Vilkov, A. N.; Gritsenko, M.; Shi, L. Characterization of Purified c-Type Heme-Containing Peptides and Identification of c-Type Heme-Attachment Sites in Shewanella oneidenis Cytochromes Using Mass Spectrometry J. Proteome Res. 2005, 4 (3) 846-854
-
(2005)
J. Proteome Res.
, vol.4
, Issue.3
, pp. 846-854
-
-
Yang, F.1
Bogdanov, B.2
Strittmatter, E.F.3
Vilkov, A.N.4
Gritsenko, M.5
Shi, L.6
-
56
-
-
84870905016
-
Detection and identification of Heme c-modified peptides by histidine affinity chromatography, high-performance liquid chromatography-mass spectrometry, and database searching
-
Merkley, E. D.; Anderson, B. J.; Park, J.; Belchik, S. M.; Shi, L.; Monroe, M. E. Detection and Identification of Heme c-Modified Peptides by Histidine Affinity Chromatography, High-Performance Liquid Chromatography-Mass Spectrometry, and Database Searching J. Proteome Res. 2012, 11 (12) 6147-6158
-
(2012)
J. Proteome Res.
, vol.11
, Issue.12
, pp. 6147-6158
-
-
Merkley, E.D.1
Anderson, B.J.2
Park, J.3
Belchik, S.M.4
Shi, L.5
Monroe, M.E.6
-
57
-
-
84872905870
-
Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth
-
Luef, B.; Fakra, S. C.; Csencsits, R.; Wrighton, K. C.; Williams, K. H.; Wilkins, M. J. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth ISME J. 2013, 7 (2) 338-350
-
(2013)
ISME J.
, vol.7
, Issue.2
, pp. 338-350
-
-
Luef, B.1
Fakra, S.C.2
Csencsits, R.3
Wrighton, K.C.4
Williams, K.H.5
Wilkins, M.J.6
-
58
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L.; Fedorova, N. D.; Jackson, J. D.; Jacobs, A. R.; Kiryutin, B.; Koonin, E. V.; The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003, 4.
-
(2003)
BMC Bioinformatics
, vol.4
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
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