Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium

Geochimica et Cosmochimica Acta

Volumn 62, Issue 19-20, 1998, Pages 3239-3257

  Fredrickson, James K ^a   Zachara, John M ^a   Kennedy, David W ^a   Dong, Hailang ^b   Onstott, Tullis C ^b   Hinman, Nancy W ^c   Li, Shu Mei ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c UNIVERSITY OF MONTANA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANAEROBIOSIS; IRON; SULFATE-REDUCING BACTERIUM;

EID: 0032468301     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0016-7037(98)00243-9     Document Type: Article

References (92)

1. Al-Borno A. and Tomson B. T. (1994) The temperature dependence of the solubility product constant of vivianite. Geochim. Cosmochim. Acta 58, 5373-5378.
2. Allison J. D., Brown D. S., and Novo-Gradac K. J. (1991) MINT-EQA2/PRODEFA2, A Geochemical Assessment Model for Environmental Systems: Version 3.0 User's Manual. EPA.
3. Arnold R. G., DeChristina T. J., Hoffman, M. R. (1988) Reductive dissolution of Fe(III) oxides by Pseudomonas sp. 200. Biotechnol. Bioeng. 32, 1081-1096.
4. Baedecker M. J., Cozzarelli I. M., Evans J. R., and Hearn P. P. (1992) Authigenic mineral formation in aquifers rich in organic material. In 7th Intl. Conf. Water-Rock Interaction (ed. Kharaka and Maest) pp. 257-261. Balkema.
5. Bell P. E., Mills A. L., Herman J. S. (1987) Biogeochemical conditions favoring magnetite formation during anaerobic iron reduction. Appl. Environ. Microbiol. 53, 2610-2616.
6. Bigham J. M. and Tuovinen O. H. (1985) Mineralogical, morphological, and microbiological characteristics of tubercles in cast iron water mains as related to their chemical activity. In Planetary Ecology (ed. D. E. Caldwell et al.), pp. 239-250. Van Nostrand Reinhold.
7. Blakemore R. P. and Blakemore N. A. (1991) Magnetotactic magnetogens. In Iron Biominerals (ed. R. B. Frankel and R. P. Blakemore), pp. 51-77. Plenum Press.
8. Brindley G. W. and Bisch D. L. (1976) GR: A pyroaurite type structure. Nature 263, 353.
9. 3 (σ) at 25°C and 1 atm total pressure. Geochim. Cosmochim. Acta 56, 1149-1155.
10. 2-siderite. Geochim. Cosmochim. Acta 52, 2445-2450.
11. Chai L. and Navrotsky A. (1994) Enthalpy of formation of siderite and its application in phase equilibrium calculation. Amer. Mineral. 79, 921-929.
12. Chao T. T. and Zhou L. (1983) Extraction techniques for selective dissolution of amorphous iron oxides from soils and sediments. Soil Sci. Soc. Amer. J. 47, 225-232.
13. Clark W. M. (1960) Oxidation-Reduction Potentials of Organic Systems. The Williams & Wilkins Co.
14. Cornell R. M. (1988) The influence of some divalent cations on the transformation of ferrihydrite into more crystalline products. Clay Mineral. 23, 329-332.
15. Cornell R. M. and Giovanoli R. (1985) Effect of solution conditions on the proportion and morphology of goethite formed from ferrihydrite. Clays Clay Miner. 33, 424-432.
16. Cornell R. M. and Schneider W. (1989) Formation of goethite from ferrihydrite at physiological pH under the influence of cysteine. Polyhedron 8, 149-155.
17. 4) from aqueous solution. J. Chem. Soc. Chem. Comm. 1713-1715.
18. Dzombak D. A. and Morel F. M. M. (1990) Surface complexation modeling: Hydrous ferric oxide. Wiley.
19. Emerson S. (1976) Early diagenesis in anaerobic lake sediments: Chemical equilibria in interstitial waters. Geochim. Cosmochim. Acta 40, 925-934.
20. Emerson S. and Widmer G. (1978) Early diagenesis in anaerobic lake sediments-II. Thermodynamic and kinetic factors controlling the formation of iron phosphate. Geochim. Cosmochim. Acta 42, 1307-1316.
21. Ferris F. G. (1989) Metallic ion interactions with the outer membrane of Gram-negative bacteria. In Metal Ions and Bacteria (ed. T. J. Beveridge and R. J. Doyle), pp. 295-323. Wiley.
22. Ferris F. G., Wiese R. G., and Fyfe W. S. (1994) Precipitation of carbonate minerals by microorganisms: Implications for silicate weathering and the global carbon dioxide budget. Geomicrobiol. J. 12, 1-13.
23. Fischer W. R. and Schwertmann U. (1975) The formation of hematite from amorphous iron(III)hydroxide. Clays Clay Miner. 23, 33-37.
24. Fredrickson J. K. et al. (1997) Pore-size constraints on the activity and survival of subsurface bacteria in a late Cretaceous shale-sandstone sequence, northwestern New Mexico. Geomicrobiol. J. 14, 183-202.
25. Gautier D. L. (1982) Siderite concretions: Indicators of early diagenesis in the Gammon shale (Cretaceous). J. Sediment. Petrol. 52, 859-871.
26. Gorby Y. A., Beveridge R. J., and Blakemore R. P. (1988) Characterization of the bacterial magnetosome membrane. J. Bacteriol. 170, 834-841.
27. Gorby Y. A., Amonette J. E., and Fruchter J. S. (1995) Remediation of subsurface materials by a metal-reducing bacterium. In Proceedings of the 33rd Hanford Life Sciences Symposium on Health and the Environment - In Situ Remediation: The Scientific Basis for Current And Future Technologies (ed. G. W. Gee and N. R. Wing), pp. 233-248. Battelle Press.
28. Guerinot M. L. (1994) Microbial iron transport. Ann. Rev. Microbiol. 48, 743-772.
29. Hansen H. C. B. (1989) Composition, stabilization, and light absorption of Fe(II)Fe(III) hydroxy-carbonate (green rust). Clay Miner. 24, 663-669.
30. Hansen H. C. B., Borggaard O. K., and Sorensen J. (1994) Evaluation of the free energy of formation of Fe(II)-Fe(III) hydroxide-sulphate (green rust) and it's reduction of nitrite. Geochim. Cosmochim. Acta 58, 2599-2608.
31. Heijman C. G., Holliger C., Glaus M. A., Schwarzenbach R. P., and Zeyer J. (1993) Abiotic reduction of 4-chloronitrobenzene to 4-chloroaniline in a dissimilatory iron-reducing enrichment culture. Appl. Environ. Microbiol. 59, 4350-4353.
32. Heijman C. G., Grieder E., Holliger C., and Schwarzenbach R. P. (1995) Reduction of nitroaromatic compounds coupled to microbial iron reduction in laboratory aquifer columns. Environ. Sci. Technol. 29, 775-783.
33. Heron G., Tjell J. C., and Christensen T. H. (1994) Oxidation capacity of aquifer sediments. Environ. Sci. Tech. 28, 153-158.
34. Jolivet J. P., Belleville P., Tronc E., and Livage J. (1992) Influence of Fe(II) on the formation of the spinel iron oxide in alkaline medium. Clays Clay Miner. 40, 531-539.
35. Karlin R., Lyle M., and Heath G. R. (1987) Authigenic magnetite formation in suboxic marine sediments. Nature 326, 490-493.
36. Kazumi J., Haggblom M. M., and Young L. Y. (1995) Degradation of monochlorinated and nonchlorinated aromatic compounds under iron-reducing conditions. Appl. Environ. Microbiol. 61, 4069-4073.
37. Koch C. B. and Morup S. (1991) Identification of green rust in an ochre sludge. Clay Mineral. 26, 577-582.
38. Kostka J. E. and Nealson K. H. (1995) Dissolution and reduction of magnetite by bacteria. Environ. Sci. Tech. 29, 2535-2540.
39. Kung K.-H. and McBride M. B. (1988) Electron transfer processes between hydroquinone and iron oxides. Clays Clay Miner. 36, 303-309.
40. LaKind J. S. and Stone A. T. (1989) Reductive dissolution of goethite by phenolic reductants. Geochim. Cosmochim. Acta 53, 961-971.
41. Lippmann F. (1973) Sedimentary Carbonate Minerals. Springer-Verlag.
42. Lovley D. R. (1991a) Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol. Rev. 55, 259-287.
43. Lovley D. R. (1991b) Magnetite formation during microbial dissimilatory iron reduction. In Iron Biominerals (ed. R. B. Frankel and R. P. Blakemore), pp. 151-166. Plenum Press.
44. Lovley D. R. (1993) Dissimilatory metal reduction. Ann. Rev. Microbiol. 47, 263-290.
45. Lovley D. R. and Lonergan D. J. (1990) Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism, GS-15. Appl. Environ. Microbiol. 56, 1858-1864.
46. Lovley D. R. and Phillips E. J. P. (1986) Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal Potomac River. Appl. Environ. Microbiol. 52, 751-757.
47. Lovley D. R. and Phillips E. J. P. (1987) Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl. Environ. Microbiol. 53, 1536-1540.
48. Lovley D. R. and Phillips E. J. P. (1988) Novel mode of microbial energy metabolism: Organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl. Environ. Microbiol. 54, 1472-1480.
49. Lovley D. R., Stolz J. F., Nord G. L., Jr., and Phillips E. J. P. (1987) Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism. Nature 330, 252-254.
50. Lovley D. R., Phillips E. J. P., and Lonergan D. J. (1991) Enzymatic versus nonenzymatic mechanisms for Fe(III) reduction in aquatic sediments. Environ. Sci. Technol. 25, 1062-1067.
51. Lovley D. R., Coates J. D., Blunt-Harris E. L., Phillips E. J. P., and Woodward J. C. (1996) Humic substances as electron acceptors for microbial respiration. Nature 382, 445-448.
52. Lovley D. R., Fraga J. L., Blunt-Harris E. L., Hayes L. A., Phillips E. J. P., and Coates J. D. (1998) Humic substances as a mediator for microbially catalyzed metal reduction. Acta Hydrochim. Hydrobiol. in press.
53. Maher B. A. and Taylor R. M. (1988) Formation of ultrafine-grained magnetite in soils. Nature 336, 368-370.
54. Mann S. (1989) Crystallochemical strategies in biomineralization. In Biomineralization (ed. S. Mann et al.), pp. 35-62. VCH.
55. Mann S., Sparks N. H. C., Couling S. B., Larcombe M. C., and Frankel R. B. (1989) Crystallochemical characterization of magnetic spinels prepared from aqueous solution. J. Chem. Soc. Faraday Trans. 85, 3033-3044.
56. McGill J. R., McEananey B., and Smith D. C. (1976) Crystal structure of green rust formed by corrosion of cast iron. Nature 259, 200-201.
57. Miyata S. (1983) Anion-exchange properties of hydrotalcite-like compounds. Clays Clay Miner. 31, 305-311.
58. Morel F. M. M. (1983) Principles of Aquatic Chemistry. Wiley.
59. Mortimer R. J. G. and Coleman M. L. (1997) Microbial influence on the isotopic composition of diagenetic siderite. Geochim. Cosmochim. Acta 61, 1705-1711.
60. Mortimer R. J. G., Coleman M. L., Rae J. E. (1997) Effect of bacteria on the elemental composition of early diagenetic siderite: Implications for palaeoenvironmental interpretations. Sedimentology 44, 759-765.
61. Mozley P. S. and Carothers W. W. (1992) Elemental and isotopic composition of siderite in the Kuparuk Formation, Alaska: Effect of microbial activity and water/sediment interaction on early porewater chemistry. J. Sediment. Petrol. 62, 681-692.
62. Mozley P. S. and Wersin P. (1992) Isotopic composition of siderite as an indicator of depositional environment. Geology 20, 817-820.
63. Myers C. R. and Meyers J. M. (1992) Localization of cytochromes to the outer membrane of anaerobically grown S. putrefaciens MR-1. J. Bacteriol. 174, 3429-3438.
64. Myers C. R. and Myers J. M. (1993) Role of menaquinone in the reduction of fumarate, nitrate, iron(III) and manganese(IV) by S. putrefaciens MR-1. FEMS Microbiol. Lett. 114, 215-222.
65. Myers C. R. and Myers J. M. (1997) Outer membrane cytochromes of S. putrefaciens MR-1: Spectral analysis, and purification of the 83-kDa c-type cytochrome. Biochim. Biophys. Acta 1326, 307-318.
66. Nealson K. and Saffarini D. (1994) Iron and manganese in anaerobic respiration: environmental significance, physiology, and regulation. Ann. Rev. Microbiol. 48, 311-343.
67. Olsen S. R. and Sommers L. E. (1982) Phosphorous. In Methods of Soil Analysis, Part 2-Chemical and Microbiological Properties (ed. A. L. Page et al.), pp. 403-430. Amer. Soc. Agron.
68. Postma D. (1981) Formation of siderite and vivianite and the porewater composition of a recent bog sediment in Denmark. Chem. Geol. 31, 225-244.
69. Pye K., Dickson J. A. D., Schiavon N., Coleman M. L., and Cox M. (1990) Formation of siderite-Mg-calcite-iron sulphide concretions in intertidal marsh and sandflat sediments, north Norfolk, England. Sedimentology 37, 325-343.
70. Rajan S., Mackenzie F. T., and Glenn C. R. (1996) A thermodynamic model for water column precipitation of siderite in the Plio-Pleistocene Black Sea. Amer. J. Sci. 296, 506-548.
71. Roden E. E. and Zachara J. M. (1996) Microbial reduction of crystalline Fe(III) oxides: Influence of oxide surface area and potential for cell growth. Environ. Sci. Technol. 30, 1618-1628.
72. Schwertmann U. and Murad E. (1983) Effect of pH on the formation of goethite and hematite from ferrihydrite. Clays Clay Miner. 31, 277-284.
73. Smith R. M. and Martell A. E. (1997) NIST Critically Selected Stability Constants of Metal Complexes Database. Version 3.0. User's Guide and Database Software. NIST Standard Reference Database 46.
74. Sparks N. H. C., Mann S., Bazylinski D. A., Lovley D. R., Jannasch H. W., and Frankel R. B. (1990) Structure and morphology of magnetite anaerobically-produced by a marine magnetotactic bacterium and a dissimilatory iron-reducing bacterium. Earth Planet. Sci. Lett. 98, 14-22.
75. Stampfl P. P. (1969) Ein basisches Eisen-II-III-Karabonat in Rost. Corros. Sci. 9, 185-187.
76. Stone A. T. and Morgan J. J. (1984) Reduction and dissolution of manganese(III) and manganese(IV) oxides by organics. 1. Reaction with hydroquinone. Environ. Sci. Technol. 18, 450-456.
77. Stookey L. L (1970) Ferrozine - a new spectrophotometric reagent for iron. Anal. Chem 42, 779-781.
78. Suess E. (1979) Mineral phases formed in anoxic sediments by microbial decomposition of organic matter. Geochim. Cosmochim. Acta 43, 339-352.
79. 4. Bull. Chem. Soc. Japan 57, 2411-2416.
80. Taylor R. M. (1980) Formation and properties of Fe(II),(III) hydroxy carbonate and its possible significance in soil formation. Clay Mineral. 15, 369-382.
81. Taylor R. M., Schwertmann U., and Fechter H. (1985) A rapid method for the formation of Fe(II), Fe(III)-hydroxy carbonate. Clay Mineral. 20, 147-151.
82. Tratnyek P. G. (1987) Abiotic reduction of nitro aromatic pesticides in anaerobic laboratory systems designed to model dissolved organic matter. Ph.D. Thesis, Colorado Sch. Mines.
83. Trolard F., Genin J. M. R., Abdelmoula M., Bourrie G., Humbert B., and Herbillon A. 1997. Identification of a green rust mineral in a redoctomorphic soil by Mössbauer and Raman spectroscopies. Geochim. Cosmochim. Acta 61, 1107-1111.
84. Tronc E., Belleville P., Jolivet J. P., and Livage J. (1992) Transformation of ferric hydroxide into spinel by Fell adsorption. Langmuir 8, 313-319.
85. Urrutia M. M., Roden E. E., Fredrickson J. K., and Zachara J. M. (1998) Microbial and surface chemistry controls on reduction of synthetic Fe(III) oxide minerals by the dissimilatory iron-reducting bacterium Shewanella alga. Geomicrobiol. J. 15, 269-291.
86. Vins J., Subert J., Zapletal V., and Hansousek F. (1987) Preparation and properties of green rust type substances. Collect. Czech. Chem. Comm. 52, 93-102.
87. Wagman D. D. et al. (1982) The NBS Tables of Chemical Thermodynamic Properties. Selected Values for Inorganic and C1 and C2 Organic Substances in SI Units. J. Phys. Chem. Ref. Data 11, 1-392.
88. Walker J. C. G. (1984) Suboxic diagenesis in banded iron formations. Nature 309, 340-342.
89. Wallmann K., Hennies K., Konig I., Petersen W., and Knauth H.-D. (1993) New procedure for determining reactive Fe(III) and Fe(II) minerals in sediments. Limnol. Oceanogr. 38, 1803-1812.
90. Wersin P., Charlet L., Karthein R., and Stumm W. (1989) From adsorption to precipitation: Sorption of Mn2+ on FeCO3. Geochim. Cosmochim. Acta 53, 2787-2796.
91. Williams R. J. P. (1989) The functional forms of biominerals. In Biomineralization (ed. S. Mann et al.), pp. 1-34. VCH.
92. Zachara J. M., Fredrickson J. K., Li S. W., Kennedy D. W., Smith S. C., and Gassman P. L. (1998) Bacterial reduction of crystalline Fe(III) oxides in single phase suspensions and subsurface materials. Amer. Mineral. 83, 1426-1443.