-
1
-
-
84874588257
-
Ecology, Microbial
-
Schaechter M. editor, Oxford: Elsevier
-
Konopka A Ecology, Microbial. In: Schaechter M, editor. Encyclopedia of Microbiology. Oxford: Elsevier. 91-106.
-
Encyclopedia of Microbiology
, pp. 91-106
-
-
Konopka, A.1
-
2
-
-
69949110616
-
How Geobacteraceae may dominate subsurface biodegradation: physiology of Geobacter metallireducens in slow-growth habitat-simulating retentostats
-
Lin B, Westerhoff HV, Röling WFM, (2009) How Geobacteraceae may dominate subsurface biodegradation: physiology of Geobacter metallireducens in slow-growth habitat-simulating retentostats. Enviro Microbiol 11: 2425-2433.
-
(2009)
Enviro Microbiol
, vol.11
, pp. 2425-2433
-
-
Lin, B.1
Westerhoff, H.V.2
Röling, W.F.M.3
-
3
-
-
0037817377
-
Determination of In Situ Bacterial Growth Rates in Aquifers and Aquifer Sediments
-
Mailloux BJ, Fuller ME, (2003) Determination of In Situ Bacterial Growth Rates in Aquifers and Aquifer Sediments. Appl Environ Microbiol 69: 3798-3808.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3798-3808
-
-
Mailloux, B.J.1
Fuller, M.E.2
-
4
-
-
58549102477
-
Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments
-
Holmes DE, O'Neil RA, Chavan MA, N'Guessan LA, Vrionis HA, et al. (2008) Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments. ISME J 3: 216-230.
-
(2008)
ISME J
, vol.3
, pp. 216-230
-
-
Holmes, D.E.1
O'Neil, R.A.2
Chavan, M.A.3
N'Guessan, L.A.4
Vrionis, H.A.5
-
5
-
-
70349932972
-
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation
-
Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, et al. (2009) Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol 75: 6591-6599.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6591-6599
-
-
Wilkins, M.J.1
Verberkmoes, N.C.2
Williams, K.H.3
Callister, S.J.4
Mouser, P.J.5
-
6
-
-
10744231694
-
Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer
-
Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, et al. (2003) Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer. Appl Environ Microbiol 69: 5884-5891.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5884-5891
-
-
Anderson, R.T.1
Vrionis, H.A.2
Ortiz-Bernad, I.3
Resch, C.T.4
Long, P.E.5
-
7
-
-
0024191542
-
Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese
-
Lovley DR, Phillips ER, (1988) Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54: 1472-1480.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1472-1480
-
-
Lovley, D.R.1
Phillips, E.R.2
-
8
-
-
0025920876
-
Microbial reduction of uranium
-
Lovley DR, Phillips EJP, Gorby YA, Landa E, (1991) Microbial reduction of uranium. Nature 350: 413-416.
-
(1991)
Nature
, vol.350
, pp. 413-416
-
-
Lovley, D.R.1
Phillips, E.J.P.2
Gorby, Y.A.3
Landa, E.4
-
9
-
-
2442638056
-
Vanadium Respiration by Geobacter metallireducens: Novel Strategy for In Situ Removal of Vanadium from Groundwater
-
Ortiz-Bernad I, Anderson RT, Vrionis HA, Lovley DR, (2004) Vanadium Respiration by Geobacter metallireducens: Novel Strategy for In Situ Removal of Vanadium from Groundwater. Appl Environ Microbiol 70: 3091-3095.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3091-3095
-
-
Ortiz-Bernad, I.1
Anderson, R.T.2
Vrionis, H.A.3
Lovley, D.R.4
-
10
-
-
70449095186
-
Investigating different mechanisms for biogenic selenite transformations: Geobacter sulfurreducens, Shewanella oneidensis and Veillonella atypica
-
Pearce CI, Pattrick RAD, Law N, Charnock JC, Coker VS, et al. (2009) Investigating different mechanisms for biogenic selenite transformations: Geobacter sulfurreducens, Shewanella oneidensis and Veillonella atypica. Environ Technol 30: 1313-1326.
-
(2009)
Environ Technol
, vol.30
, pp. 1313-1326
-
-
Pearce, C.I.1
Pattrick, R.A.D.2
Law, N.3
Charnock, J.C.4
Coker, V.S.5
-
11
-
-
79956110173
-
Acetate availability and its influence on sustainable bioremediation of uranium-contaminated groundwater
-
Williams KH, Long PE, Davis JA, Wilkins MJ, N'Guessan AL, et al. (2011) Acetate availability and its influence on sustainable bioremediation of uranium-contaminated groundwater. Geomicro J 28: 519-539.
-
(2011)
Geomicro J
, vol.28
, pp. 519-539
-
-
Williams, K.H.1
Long, P.E.2
Davis, J.A.3
Wilkins, M.J.4
N'Guessan, A.L.5
-
12
-
-
84874617545
-
Integrative analysis of the interactions between Geobacter spp. and sulfate-reducing bacteria during uranium bioremediation
-
Barlett M, Zhuang K, Mahadevan R, Lovley DR, (2011) Integrative analysis of the interactions between Geobacter spp. and sulfate-reducing bacteria during uranium bioremediation. Biogeosciences Discuss 8: 11337-11357.
-
(2011)
Biogeosciences Discuss
, vol.8
, pp. 11337-11357
-
-
Barlett, M.1
Zhuang, K.2
Mahadevan, R.3
Lovley, D.R.4
-
13
-
-
67449110763
-
Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater
-
Mouser PJ, N'Guessan AL, Elifantz H, Holmes DE, Williams KH, et al. (2009) Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater. Environ Sci Technol 43: 4386-4392.
-
(2009)
Environ Sci Technol
, vol.43
, pp. 4386-4392
-
-
Mouser, P.J.1
N'Guessan, A.L.2
Elifantz, H.3
Holmes, D.E.4
Williams, K.H.5
-
14
-
-
76349121789
-
Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer
-
N'Guessan AL, Elifantz H, Nevin KP, Mouser PJ, Methe B, et al. (2010) Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer. ISME J 4: 253-266.
-
(2010)
ISME J
, vol.4
, pp. 253-266
-
-
N'Guessan, A.L.1
Elifantz, H.2
Nevin, K.P.3
Mouser, P.J.4
Methe, B.5
-
15
-
-
77955249738
-
Expression of acetate permease-like (apl) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations
-
Elifantz H, N'Guessan LA, Mouser PJ, Williams KH, Wilkins MJ, et al. (2010) Expression of acetate permease-like (apl) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations. FEMS Microbiol Ecol 73: 441-449.
-
(2010)
FEMS Microbiol Ecol
, vol.73
, pp. 441-449
-
-
Elifantz, H.1
N'Guessan, L.A.2
Mouser, P.J.3
Williams, K.H.4
Wilkins, M.J.5
-
16
-
-
36849085899
-
Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments
-
Holmes DE, O'Neil RA, Vrionis HA, N'Guessan LA, Ortiz-Bernad I, et al. (2007) Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments. ISME J 1: 663-677.
-
(2007)
ISME J
, vol.1
, pp. 663-677
-
-
Holmes, D.E.1
O'Neil, R.A.2
Vrionis, H.A.3
N'Guessan, L.A.4
Ortiz-Bernad, I.5
-
17
-
-
78349248545
-
Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI)
-
Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, et al. (2010) Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI). Microb Biotech 4: 55-63.
-
(2010)
Microb Biotech
, vol.4
, pp. 55-63
-
-
Wilkins, M.J.1
Callister, S.J.2
Miletto, M.3
Williams, K.H.4
Nicora, C.D.5
-
18
-
-
84873564282
-
Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments
-
Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, et al. (2013) Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. PLoS ONE In Press.
-
(2013)
PLoS ONE In Press.
-
-
Miller, C.S.1
Handley, K.M.2
Wrighton, K.C.3
Frischkorn, K.R.4
Thomas, B.C.5
-
19
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
20
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
21
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P, (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: W475-W478.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
22
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wisniewski JR, Zougman A, Nagaraj N, Mann M, (2009) Universal sample preparation method for proteome analysis. Nat Meth 6: 359-362.
-
(2009)
Nat Meth
, vol.6
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
23
-
-
33751248265
-
Chemically Etched Open Tubular and Monolithic Emitters for Nanoelectrospray Ionization Mass Spectrometry
-
Kelly RT, Page JS, Luo Q, Moore RJ, Orton DJ, et al. (2006) Chemically Etched Open Tubular and Monolithic Emitters for Nanoelectrospray Ionization Mass Spectrometry. Anal Chem 78: 7796-7801.
-
(2006)
Anal Chem
, vol.78
, pp. 7796-7801
-
-
Kelly, R.T.1
Page, J.S.2
Luo, Q.3
Moore, R.J.4
Orton, D.J.5
-
24
-
-
50149117169
-
Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
-
Kim S, Gupta N, Pevzner PA, (2008) Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases. J Prot Res 7: 3354-3363.
-
(2008)
J Prot Res
, vol.7
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
25
-
-
44249086202
-
Comparative Bacterial Proteomics: Analysis of the Core Genome Concept
-
Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, et al. (2008) Comparative Bacterial Proteomics: Analysis of the Core Genome Concept. PLoS ONE 3: e1542.
-
(2008)
PLoS ONE
, vol.3
-
-
Callister, S.J.1
McCue, L.A.2
Turse, J.E.3
Monroe, M.E.4
Auberry, K.J.5
-
26
-
-
84874738811
-
Molecular Analysis of the In Situ Growth Rate of Subsurface Geobacter Species
-
Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, et al. (2013) Molecular Analysis of the In Situ Growth Rate of Subsurface Geobacter Species. Appl Environ Microbiol In Press.
-
(2013)
Appl Environ Microbiol In Press
-
-
Holmes, D.E.1
Giloteaux, L.2
Barlett, M.3
Chavan, M.A.4
Smith, J.A.5
-
27
-
-
26844471341
-
Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site
-
Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, et al. (2005) Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site. Appl Environ Microbiol 71: 6308-6318.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6308-6318
-
-
Vrionis, H.A.1
Anderson, R.T.2
Ortiz-Bernad, I.3
O'Neill, K.R.4
Resch, C.T.5
-
28
-
-
34548184733
-
Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis
-
Denef VJ, Shah MB, VerBerkmoes NC, Hettich RL, Banfield JF, (2007) Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis. J Prot Res 6: 3152-3161.
-
(2007)
J Prot Res
, vol.6
, pp. 3152-3161
-
-
Denef, V.J.1
Shah, M.B.2
VerBerkmoes, N.C.3
Hettich, R.L.4
Banfield, J.F.5
-
29
-
-
40149105737
-
Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens
-
Segura D, Mahadevan R, Juarez K, Lovley DR (2008) Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens. PloS Comput Biol 4.
-
(2008)
PloS Comput Biol 4
-
-
Segura, D.1
Mahadevan, R.2
Juarez, K.3
Lovley, D.R.4
-
30
-
-
78650298909
-
In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling
-
Mahadevan R, Palsson Bò, Lovley DR, (2011) In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling. Nat Rev Micro 9: 39-50.
-
(2011)
Nat Rev Micro
, vol.9
, pp. 39-50
-
-
Mahadevan, R.1
Palsson, B.O.2
Lovley, D.R.3
-
31
-
-
54549114308
-
Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron donor
-
Ding YHR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, et al. (2008) Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron donor. Biochim Biophys Acta 1784: 1935-1941.
-
(2008)
Biochim Biophys Acta
, vol.1784
, pp. 1935-1941
-
-
Ding, Y.H.R.1
Hixson, K.K.2
Aklujkar, M.A.3
Lipton, M.S.4
Smith, R.D.5
-
32
-
-
34250829079
-
Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid
-
Tang YJJ, Chakraborty R, Martin HG, Chu J, Hazen TC, et al. (2007) Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid. Appl Environ Microbiol 73: 3859-3864.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3859-3864
-
-
Tang, Y.J.J.1
Chakraborty, R.2
Martin, H.G.3
Chu, J.4
Hazen, T.C.5
-
33
-
-
0036276689
-
Potential for bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction
-
Finneran KT, Anderson RT, Nevin KP, Lovley DR, (2002) Potential for bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction. Soil Sed Contam 11: 339-357.
-
(2002)
Soil Sed Contam
, vol.11
, pp. 339-357
-
-
Finneran, K.T.1
Anderson, R.T.2
Nevin, K.P.3
Lovley, D.R.4
-
34
-
-
17644385506
-
The hydrogenases of Geobacter sulfurreducens: a comparative genomic perspective
-
Coppi MV, (2005) The hydrogenases of Geobacter sulfurreducens: a comparative genomic perspective. Microbiol 151: 1239-1254.
-
(2005)
Microbiol
, vol.151
, pp. 1239-1254
-
-
Coppi, M.V.1
-
35
-
-
84861217024
-
Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens
-
Tremblay P-L, Lovley DR, (2012) Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens. J Bact 194: 2248-2253.
-
(2012)
J Bact
, vol.194
, pp. 2248-2253
-
-
Tremblay, P.-L.1
Lovley, D.R.2
-
36
-
-
0034353620
-
N-2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species
-
Bazylinski DA, Dean AJ, Schuler D, Phillips EJP, Lovley DR, (2000) N-2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species. Environ Microbiol 2: 266-273.
-
(2000)
Environ Microbiol
, vol.2
, pp. 266-273
-
-
Bazylinski, D.A.1
Dean, A.J.2
Schuler, D.3
Phillips, E.J.P.4
Lovley, D.R.5
-
37
-
-
84862836623
-
Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer
-
Campbell KM, Kukkadapu RK, Qafoku NP, Peacock AD, Lesher E, et al. (2012) Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer. Appl Geochem 27: 1499-1511.
-
(2012)
Appl Geochem
, vol.27
, pp. 1499-1511
-
-
Campbell, K.M.1
Kukkadapu, R.K.2
Qafoku, N.P.3
Peacock, A.D.4
Lesher, E.5
-
38
-
-
84865482228
-
Timing the Onset of Sulfate Reduction over Multiple Subsurface Acetate Amendments by Measurement and Modeling of Sulfur Isotope Fractionation
-
Druhan JL, Steefel CI, Molins S, Williams KH, Conrad ME, et al. (2012) Timing the Onset of Sulfate Reduction over Multiple Subsurface Acetate Amendments by Measurement and Modeling of Sulfur Isotope Fractionation. Environ Sci Technol 46: 8895-8902.
-
(2012)
Environ Sci Technol
, vol.46
, pp. 8895-8902
-
-
Druhan, J.L.1
Steefel, C.I.2
Molins, S.3
Williams, K.H.4
Conrad, M.E.5
|