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Volumn 406, Issue 1, 2011, Pages 29-43

RNase III participates in gadY-dependent cleavage of the gadX-gadW mRNA

Author keywords

acid response; antisense RNA; OOP RNA; ribonuclease

Indexed keywords

MESSENGER RNA; RIBONUCLEASE III;

EID: 79151470965     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2010.12.009     Document Type: Article
Times cited : (95)

References (32)
  • 1
    • 34250725542 scopus 로고    scopus 로고
    • Identification of bacterial small non-coding RNAs: Experimental approaches
    • Altuvia S. Identification of bacterial small non-coding RNAs: experimental approaches Curr. Opin. Microbiol. 10 2007 257 261
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 257-261
    • Altuvia, S.1
  • 2
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters L.S., and Storz G. Regulatory RNAs in bacteria Cell 136 2009 615 628
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 3
    • 78149421813 scopus 로고    scopus 로고
    • Bacterial antisense RNAs: How many are there and what are they doing?
    • Thomason M.K., and Storz G. Bacterial antisense RNAs: how many are there and what are they doing? Annu. Rev. Genet. 44 2010 167 188
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 167-188
    • Thomason, M.K.1    Storz, G.2
  • 4
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • Opdyke J.A., Kang J.G., and Storz G. GadY, a small-RNA regulator of acid response genes in Escherichia coli J. Bacteriol. 186 2004 6698 6705
    • (2004) J. Bacteriol. , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1    Kang, J.G.2    Storz, G.3
  • 5
    • 0036956513 scopus 로고    scopus 로고
    • Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW)
    • Ma Z., Richard H., Tucker D.L., Conway T., and Foster J.W. Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW) J. Bacteriol. 184 2002 7001 7012
    • (2002) J. Bacteriol. , vol.184 , pp. 7001-7012
    • Ma, Z.1    Richard, H.2    Tucker, D.L.3    Conway, T.4    Foster, J.W.5
  • 6
    • 0036237890 scopus 로고    scopus 로고
    • Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system
    • Tramonti A., Visca P., De Canio M., Falconi M., and De Biase D. Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system J. Bacteriol. 184 2002 2603 2613
    • (2002) J. Bacteriol. , vol.184 , pp. 2603-2613
    • Tramonti, A.1    Visca, P.2    De Canio, M.3    Falconi, M.4    De Biase, D.5
  • 7
    • 54249135920 scopus 로고    scopus 로고
    • GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: Transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites
    • Tramonti A., De Canio M., and De Biase D. GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites Mol. Microbiol. 70 2008 965 982
    • (2008) Mol. Microbiol. , vol.70 , pp. 965-982
    • Tramonti, A.1    De Canio, M.2    De Biase, D.3
  • 8
    • 33751555223 scopus 로고    scopus 로고
    • Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli
    • Tramonti A., De Canio M., Delany I., Scarlato V., and De Biase D. Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli J. Bacteriol. 188 2006 8118 8127
    • (2006) J. Bacteriol. , vol.188 , pp. 8118-8127
    • Tramonti, A.1    De Canio, M.2    Delany, I.3    Scarlato, V.4    De Biase, D.5
  • 10
    • 34247099372 scopus 로고    scopus 로고
    • Regulatory mechanisms employed by cis-encoded antisense RNAs
    • Brantl S. Regulatory mechanisms employed by cis-encoded antisense RNAs Curr. Opin. Microbiol. 10 2007 102 109
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 102-109
    • Brantl, S.1
  • 11
    • 0025305877 scopus 로고
    • The IS10 antisense RNA blocks ribosome binding at the transposase translation initiation site
    • Ma C., and Simons R.W. The IS10 antisense RNA blocks ribosome binding at the transposase translation initiation site EMBO J. 9 1990 1267 1274
    • (1990) EMBO J. , vol.9 , pp. 1267-1274
    • Ma, C.1    Simons, R.W.2
  • 12
    • 0025278320 scopus 로고
    • The IS10 transposase mRNA is destabilized during antisense RNA control
    • Case C.C., Simons E.L., and Simons R.W. The IS10 transposase mRNA is destabilized during antisense RNA control EMBO J. 9 1990 1259 1266
    • (1990) EMBO J. , vol.9 , pp. 1259-1266
    • Case, C.C.1    Simons, E.L.2    Simons, R.W.3
  • 13
    • 0025369028 scopus 로고
    • Control of replication of plasmid R1: The duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III
    • Blomberg P., Wagner E.G.H., and Nordström K. Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III EMBO J. 9 1990 2331 2340
    • (1990) EMBO J. , vol.9 , pp. 2331-2340
    • Blomberg, P.1    Wagner, E.G.H.2    Nordström, K.3
  • 14
    • 0023448458 scopus 로고
    • OOP RNA, produced from multicopy plasmids, inhibits lambda cII gene expression through an RNase III-dependent mechanism
    • Krinke L., and Wulff D.L. OOP RNA, produced from multicopy plasmids, inhibits lambda cII gene expression through an RNase III-dependent mechanism Genes Dev. 1 1987 1005 1013
    • (1987) Genes Dev. , vol.1 , pp. 1005-1013
    • Krinke, L.1    Wulff, D.L.2
  • 15
    • 0029050239 scopus 로고
    • Antisense RNA regulation of the fatB iron transport protein gene in Vibrio anguillarum
    • Waldbeser L.S., Chen Q., and Crosa J.H. Antisense RNA regulation of the fatB iron transport protein gene in Vibrio anguillarum Mol. Microbiol. 17 1995 747 756
    • (1995) Mol. Microbiol. , vol.17 , pp. 747-756
    • Waldbeser, L.S.1    Chen, Q.2    Crosa, J.H.3
  • 16
    • 0025685246 scopus 로고
    • RNase III-dependent hydrolysis of lcII-O gene mRNA mediated by l OOP antisense RNA
    • Krinke L., and Wulff D.L. RNase III-dependent hydrolysis of lcII-O gene mRNA mediated by l OOP antisense RNA Genes Dev. 4 1990 2223 2233
    • (1990) Genes Dev. , vol.4 , pp. 2223-2233
    • Krinke, L.1    Wulff, D.L.2
  • 18
    • 34548496904 scopus 로고    scopus 로고
    • What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome
    • Tsilibaris V., Maenhaut-Michel G., Mine N., and Van Melderen L. What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome J. Bacteriol. 189 2007 6101 6108
    • (2007) J. Bacteriol. , vol.189 , pp. 6101-6108
    • Tsilibaris, V.1    Maenhaut-Michel, G.2    Mine, N.3    Van Melderen, L.4
  • 20
    • 0017807890 scopus 로고
    • Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
    • Chang A.C.Y., and Cohen S.N. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid J. Bacteriol. 134 1978 1141 1156
    • (1978) J. Bacteriol. , vol.134 , pp. 1141-1156
    • Chang, A.C.Y.1    Cohen, S.N.2
  • 21
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using the polymerase chain reaction
    • Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction Gene 77 1989 51 59
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Pullen, J.K.4    Pease, L.R.5
  • 22
    • 0141483177 scopus 로고    scopus 로고
    • Mini-lambda: A tractable system for chromosome and BAC engineering
    • Court D., Swaminathan S., Yu D., Wilson H., Baker T., and Bubunenko M. Mini-lambda: a tractable system for chromosome and BAC engineering Gene 315 2003 63 69
    • (2003) Gene , vol.315 , pp. 63-69
    • Court, D.1    Swaminathan, S.2    Yu, D.3    Wilson, H.4    Baker, T.5    Bubunenko, M.6
  • 23
    • 33645468730 scopus 로고    scopus 로고
    • Imaging OmpR localization in Escherichia coli
    • Batchelor E., and Goulian M. Imaging OmpR localization in Escherichia coli Mol. Microbiol. 59 2006 1767 1778
    • (2006) Mol. Microbiol. , vol.59 , pp. 1767-1778
    • Batchelor, E.1    Goulian, M.2
  • 24
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko K.A., and Wanner B.L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl Acad. Sci. USA 97 2000 6640 6645
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 25
    • 0029065955 scopus 로고
    • R cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
    • R cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant Gene 158 1995 9 14
    • (1995) Gene , vol.158 , pp. 9-14
    • Cherepanov, P.P.1    Wackernagel, W.2
  • 26
    • 0024672741 scopus 로고
    • Genetic analysis of the rnc operon of Escherichia coli
    • Takiff H.E., Chen S.M., and Court D.L. Genetic analysis of the rnc operon of Escherichia coli J. Bacteriol. 171 1989 2581 2590
    • (1989) J. Bacteriol. , vol.171 , pp. 2581-2590
    • Takiff, H.E.1    Chen, S.M.2    Court, D.L.3
  • 28
    • 0028269435 scopus 로고
    • Copurification of E. coli RNAase e and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis A.J., Van Houwe G., Ehretsmann C., and Krisch H.M. Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation Cell 76 1994 889 900
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 29
    • 0024206114 scopus 로고
    • Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors
    • Kirsebom L.A., Baer M.F., and Altman S. Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors J. Mol. Biol. 204 1988 879 888
    • (1988) J. Mol. Biol. , vol.204 , pp. 879-888
    • Kirsebom, L.A.1    Baer, M.F.2    Altman, S.3
  • 30
    • 0025740545 scopus 로고
    • A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K12 adversely affects growth
    • Itaya M., and Crouch R.J. A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K12 adversely affects growth Mol. Gen. Genet. 227 1991 424 432
    • (1991) Mol. Gen. Genet. , vol.227 , pp. 424-432
    • Itaya, M.1    Crouch, R.J.2
  • 31
    • 0141860088 scopus 로고    scopus 로고
    • Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
    • Massé E., Escorcia F.E., and Gottesman S. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli Genes Dev. 17 2003 2374 2383
    • (2003) Genes Dev. , vol.17 , pp. 2374-2383
    • Massé, E.1    Escorcia, F.E.2    Gottesman, S.3


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