메뉴 건너뛰기




Volumn 167, Issue 3, 2015, Pages 1186-1203

Revealing shared and distinct gene network organization in arabidopsis immune responses by integrative analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84923683880     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.114.254292     Document Type: Article
Times cited : (49)

References (83)
  • 2
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabási AL, Oltvai ZN (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabási, A.L.1    Oltvai, Z.N.2
  • 3
    • 80054969308 scopus 로고    scopus 로고
    • Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets
    • Bassel GW, Glaab E, Marquez J, Holdsworth MJ, Bacardit J (2011a) Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets. Plant Cell 23: 3101-3116.
    • (2011) Plant Cell , vol.23 , pp. 3101-3116
    • Bassel, G.W.1    Glaab, E.2    Marquez, J.3    Holdsworth, M.J.4    Bacardit, J.5
  • 5
    • 76449090623 scopus 로고    scopus 로고
    • GO-At: In silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data
    • Bradford JR, Needham CJ, Tedder P, Care MA, Bulpitt AJ, Westhead DR (2010) GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data. Plant J 61: 713-721.
    • (2010) Plant J , vol.61 , pp. 713-721
    • Bradford, J.R.1    Needham, C.J.2    Tedder, P.3    Care, M.A.4    Bulpitt, A.J.5    Westhead, D.R.6
  • 6
    • 0035478854 scopus 로고    scopus 로고
    • Random Forest
    • Breiman L (2001) Random Forest. Mach Learn 45: 5-32.
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 7
    • 46749097571 scopus 로고    scopus 로고
    • Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses
    • Bu Q, Jiang H, Li CB, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Li C (2008) Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses. Cell Res 18: 756-767.
    • (2008) Cell Res , vol.18 , pp. 756-767
    • Bu, Q.1    Jiang, H.2    Li, C.B.3    Zhai, Q.4    Zhang, J.5    Wu, X.6    Sun, J.7    Xie, Q.8    Li, C.9
  • 8
    • 77955933529 scopus 로고    scopus 로고
    • Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair
    • Cappadocia L, Maréchal A, Parent JS, Lepage E, Sygusch J, Brisson N (2010) Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair. Plant Cell 22: 1849-1867.
    • (2010) Plant Cell , vol.22 , pp. 1849-1867
    • Cappadocia, L.1    Maréchal, A.2    Parent, J.S.3    Lepage, E.4    Sygusch, J.5    Brisson, N.6
  • 9
    • 32944479048 scopus 로고    scopus 로고
    • Host-microbe interactions: Shaping the evolution of the plant immune response
    • Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124: 803-814.
    • (2006) Cell , vol.124 , pp. 803-814
    • Chisholm, S.T.1    Coaker, G.2    Day, B.3    Staskawicz, B.J.4
  • 10
    • 58149242371 scopus 로고    scopus 로고
    • Glucosinolate metabolites required for an Arabidopsis innate immune response
    • Clay NK, Adio AM, Denoux C, Jander G, Ausubel FM (2009) Glucosinolate metabolites required for an Arabidopsis innate immune response. Science 323: 95-101.
    • (2009) Science , vol.323 , pp. 95-101
    • Clay, N.K.1    Adio, A.M.2    Denoux, C.3    Jander, G.4    Ausubel, F.M.5
  • 11
    • 77954925595 scopus 로고    scopus 로고
    • AtCPK1 calcium-dependent protein kinase mediates pathogen resistance in Arabidopsis
    • Coca M, San Segundo B (2010) AtCPK1 calcium-dependent protein kinase mediates pathogen resistance in Arabidopsis. Plant J 63: 526-540.
    • (2010) Plant J , vol.63 , pp. 526-540
    • Coca, M.1    San Segundo, B.2
  • 12
    • 77954763024 scopus 로고    scopus 로고
    • Plant immunity: Towards an integrated view of plant-pathogen interactions
    • Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet 11: 539-548.
    • (2010) Nat Rev Genet , vol.11 , pp. 539-548
    • Dodds, P.N.1    Rathjen, J.P.2
  • 13
    • 4444371862 scopus 로고    scopus 로고
    • NPR1, all things considered
    • Dong X (2004) NPR1, all things considered. Curr Opin Plant Biol 7: 547-552.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 547-552
    • Dong, X.1
  • 14
    • 80053446196 scopus 로고    scopus 로고
    • Protein networks as logic functions in development and cancer
    • Dutkowski J, Ideker T (2011) Protein networks as logic functions in development and cancer. PLoS Comput Biol 7: e1002180.
    • (2011) PLoS Comput Biol , vol.7
    • Dutkowski, J.1    Ideker, T.2
  • 15
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright AJ, Van Dongen S, Ouzounis CA (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30: 1575- 1584.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 16
    • 84897085282 scopus 로고    scopus 로고
    • The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis
    • Fan M, Bai MY, Kim JG, Wang T, Oh E, Chen L, Park CH, Son SH, Kim SK, Mudgett MB, et al (2014) The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis. Plant Cell 26: 828-841.
    • (2014) Plant Cell , vol.26 , pp. 828-841
    • Fan, M.1    Bai, M.Y.2    Kim, J.G.3    Wang, T.4    Oh, E.5    Chen, L.6    Park, C.H.7    Son, S.H.8    Kim, S.K.9    Mudgett, M.B.10
  • 18
    • 77955682054 scopus 로고    scopus 로고
    • Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data
    • He F, Zhou Y, Zhang Z (2010) Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data. Plant Physiol 153: 1492-1505.
    • (2010) Plant Physiol , vol.153 , pp. 1492-1505
    • He, F.1    Zhou, Y.2    Zhang, Z.3
  • 19
    • 33646134105 scopus 로고    scopus 로고
    • Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity
    • He P, Shan L, Lin NC, Martin GB, Kemmerling B, Nürnberger T, Sheen J (2006) Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity. Cell 125: 563-575.
    • (2006) Cell , vol.125 , pp. 563-575
    • He, P.1    Shan, L.2    Lin, N.C.3    Martin, G.B.4    Kemmerling, B.5    Nürnberger, T.6    Sheen, J.7
  • 20
    • 84863669875 scopus 로고    scopus 로고
    • Systematic identification of functional plant modules through the integration of complementary data sources
    • Heyndrickx KS, Vandepoele K (2012) Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol 159: 884-901.
    • (2012) Plant Physiol , vol.159 , pp. 884-901
    • Heyndrickx, K.S.1    Vandepoele, K.2
  • 21
    • 0034914987 scopus 로고    scopus 로고
    • Identification of a transcription factor specifically expressed at the onset of leaf senescence
    • Hinderhofer K, Zentgraf U (2001) Identification of a transcription factor specifically expressed at the onset of leaf senescence. Planta 213: 469-473.
    • (2001) Planta , vol.213 , pp. 469-473
    • Hinderhofer, K.1    Zentgraf, U.2
  • 22
    • 84862777222 scopus 로고    scopus 로고
    • Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae
    • Hu Y, Dong Q, Yu D (2012) Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae. Plant Sci 185-186: 288-297.
    • (2012) Plant Sci , vol.185-186 , pp. 288-297
    • Hu, Y.1    Dong, Q.2    Yu, D.3
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 24644462724 scopus 로고    scopus 로고
    • TileMap: Create chromosomal map of tiling array hybridizations
    • Ji H, Wong WH (2005) TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics 21: 3629-3636.
    • (2005) Bioinformatics , vol.21 , pp. 3629-3636
    • Ji, H.1    Wong, W.H.2
  • 26
    • 33751100626 scopus 로고    scopus 로고
    • The plant immune system
    • Jones JDG, Dangl JL (2006) The plant immune system. Nature 444: 323-329.
    • (2006) Nature , vol.444 , pp. 323-329
    • Jones, J.D.G.1    Dangl, J.L.2
  • 27
    • 33845736874 scopus 로고    scopus 로고
    • The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana
    • Journot-Catalino N, Somssich IE, Roby D, Kroj T (2006) The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana. Plant Cell 18: 3289-3302.
    • (2006) Plant Cell , vol.18 , pp. 3289-3302
    • Journot-Catalino, N.1    Somssich, I.E.2    Roby, D.3    Kroj, T.4
  • 28
    • 41149104371 scopus 로고    scopus 로고
    • Dyskerin is a component of the Arabidopsis telomerase RNP required for telomere maintenance
    • Kannan K, Nelson ADL, Shippen DE (2008) Dyskerin is a component of the Arabidopsis telomerase RNP required for telomere maintenance. Mol Cell Biol 28: 2332-2341.
    • (2008) Mol Cell Biol , vol.28 , pp. 2332-2341
    • Kannan, K.1    Nelson, A.D.L.2    Shippen, D.E.3
  • 29
  • 30
    • 34247200577 scopus 로고    scopus 로고
    • The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D’Angelo C, Bornberg-Bauer E, Kudla J, Harter K (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 50: 347-363.
    • (2007) Plant J , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3    Wanke, D.4    Weinl, S.5    Batistic, O.6    D’Angelo, C.7    Bornberg-Bauer, E.8    Kudla, J.9    Harter, K.10
  • 33
    • 76349125292 scopus 로고    scopus 로고
    • Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
    • Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY (2010) Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol 28: 149-156.
    • (2010) Nat Biotechnol , vol.28 , pp. 149-156
    • Lee, I.1    Ambaru, B.2    Thakkar, P.3    Marcotte, E.M.4    Rhee, S.Y.5
  • 34
    • 1042267616 scopus 로고    scopus 로고
    • The WRKY70 transcription factor: A node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense
    • Li J, Brader G, Palva ET (2004) The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell 16: 319-331.
    • (2004) Plant Cell , vol.16 , pp. 319-331
    • Li, J.1    Brader, G.2    Palva, E.T.3
  • 37
    • 77954434420 scopus 로고    scopus 로고
    • ANCORP: A high-resolution approach that generates distinct chromatin state models from multiple genome-wide datasets
    • Luo C, Lam E (2010) ANCORP: a high-resolution approach that generates distinct chromatin state models from multiple genome-wide datasets. Plant J 63: 339-351.
    • (2010) Plant J , vol.63 , pp. 339-351
    • Luo, C.1    Lam, E.2
  • 38
    • 84861398941 scopus 로고    scopus 로고
    • HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis
    • Luo M, Wang YY, Liu X, Yang S, Lu Q, Cui Y, Wu K (2012) HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis. J Exp Bot 63: 3297-3306.
    • (2012) J Exp Bot , vol.63 , pp. 3297-3306
    • Luo, M.1    Wang, Y.Y.2    Liu, X.3    Yang, S.4    Lu, Q.5    Cui, Y.6    Wu, K.7
  • 39
    • 84865842920 scopus 로고    scopus 로고
    • Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis
    • Ma C, Wang X (2012) Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis. Plant Physiol 160: 192-203.
    • (2012) Plant Physiol , vol.160 , pp. 192-203
    • Ma, C.1    Wang, X.2
  • 40
    • 84897076534 scopus 로고    scopus 로고
    • Machine learning-based differential network analysis: A study of stress-responsive transcriptomes in Arabidopsis
    • Ma C, Xin M, Feldmann KA, Wang X (2014) Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis. Plant Cell 26: 520-537.
    • (2014) Plant Cell , vol.26 , pp. 520-537
    • Ma, C.1    Xin, M.2    Feldmann, K.A.3    Wang, X.4
  • 41
    • 80053597922 scopus 로고    scopus 로고
    • Chromatin configuration as a battlefield in plant-bacteria interactions
    • Ma KW, Flores C, Ma W (2011) Chromatin configuration as a battlefield in plant-bacteria interactions. Plant Physiol 157: 535-543.
    • (2011) Plant Physiol , vol.157 , pp. 535-543
    • Ma, K.W.1    Flores, C.2    Ma, W.3
  • 42
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere S, Heymans K, Kuiper M (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21: 3448-3449.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 43
    • 84863537088 scopus 로고    scopus 로고
    • Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
    • Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M (2012) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks. Genome Res 22: 1334-1349.
    • (2012) Genome Res , vol.22 , pp. 1334-1349
    • Marbach, D.1    Roy, S.2    Ay, F.3    Meyer, P.E.4    Candeias, R.5    Kahveci, T.6    Bristow, C.A.7    Kellis, M.8
  • 44
    • 78649775562 scopus 로고    scopus 로고
    • Enrichment map: A network-based method for gene-set enrichment visualization and interpretation
    • Merico D, Isserlin R, Stueker O, Emili A, Bader GD (2010) Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS ONE 5: e13984.
    • (2010) PLoS ONE , vol.5
    • Merico, D.1    Isserlin, R.2    Stueker, O.3    Emili, A.4    Bader, G.D.5
  • 45
    • 34250770129 scopus 로고    scopus 로고
    • The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium
    • Miao Y, Zentgraf U (2007) The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium. Plant Cell 19: 819-830.
    • (2007) Plant Cell , vol.19 , pp. 819-830
    • Miao, Y.1    Zentgraf, U.2
  • 46
    • 80053217363 scopus 로고    scopus 로고
    • Transcription dynamics in plant immunity
    • Moore JW, Loake GJ, Spoel SH (2011) Transcription dynamics in plant immunity. Plant Cell 23: 2809-2820.
    • (2011) Plant Cell , vol.23 , pp. 2809-2820
    • Moore, J.W.1    Loake, G.J.2    Spoel, S.H.3
  • 49
    • 84863084720 scopus 로고    scopus 로고
    • Integrated systems view on networking by hormones in Arabidopsis immunity reveals multiple crosstalk for cytokinin
    • Naseem M, Philippi N, Hussain A, Wangorsch G, Ahmed N, Dandekar T (2012) Integrated systems view on networking by hormones in Arabidopsis immunity reveals multiple crosstalk for cytokinin. Plant Cell 24: 1793-1814.
    • (2012) Plant Cell , vol.24 , pp. 1793-1814
    • Naseem, M.1    Philippi, N.2    Hussain, A.3    Wangorsch, G.4    Ahmed, N.5    Dandekar, T.6
  • 50
    • 84860361165 scopus 로고    scopus 로고
    • Detecting overlapping protein complexes in protein-protein interaction networks
    • Nepusz T, Yu H, Paccanaro A (2012) Detecting overlapping protein complexes in protein-protein interaction networks. Nat Methods 9: 471-472.
    • (2012) Nat Methods , vol.9 , pp. 471-472
    • Nepusz, T.1    Yu, H.2    Paccanaro, A.3
  • 51
    • 84862777553 scopus 로고    scopus 로고
    • The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition
    • Pajerowska-Mukhtar KM, Wang W, Tada Y, Oka N, Tucker CL, Fonseca JP, Dong X (2012) The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition. Curr Biol 22: 103-112.
    • (2012) Curr Biol , vol.22 , pp. 103-112
    • Pajerowska-Mukhtar, K.M.1    Wang, W.2    Tada, Y.3    Oka, N.4    Tucker, C.L.5    Fonseca, J.P.6    Dong, X.7
  • 52
    • 68249143317 scopus 로고    scopus 로고
    • The role of WRKY transcription factors in plant immunity
    • Pandey SP, Somssich IE (2009) The role of WRKY transcription factors in plant immunity. Plant Physiol 150: 1648-1655.
    • (2009) Plant Physiol , vol.150 , pp. 1648-1655
    • Pandey, S.P.1    Somssich, I.E.2
  • 53
    • 33846002373 scopus 로고    scopus 로고
    • Modularity and dynamics of cellular networks
    • Qi Y, Ge H (2006) Modularity and dynamics of cellular networks. PLoS Comput Biol 2: e174.
    • (2006) PLoS Comput Biol , vol.2
    • Qi, Y.1    Ge, H.2
  • 55
    • 77957654501 scopus 로고    scopus 로고
    • Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling
    • Sato M, Tsuda K, Wang L, Coller J, Watanabe Y, Glazebrook J, Katagiri F (2010) Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling. PLoS Pathog 6: e1001011.
    • (2010) PLoS Pathog , vol.6
    • Sato, M.1    Tsuda, K.2    Wang, L.3    Coller, J.4    Watanabe, Y.5    Glazebrook, J.6    Katagiri, F.7
  • 57
    • 79955572402 scopus 로고    scopus 로고
    • Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1
    • Schwessinger B, Roux M, Kadota Y, Ntoukakis V, Sklenar J, Jones A, Zipfel C (2011) Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1. PLoS Genet 7: e1002046.
    • (2011) PLoS Genet , vol.7
    • Schwessinger, B.1    Roux, M.2    Kadota, Y.3    Ntoukakis, V.4    Sklenar, J.5    Jones, A.6    Zipfel, C.7
  • 58
    • 84885410719 scopus 로고    scopus 로고
    • Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice
    • Shaik R, Ramakrishna W (2013) Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice. PLoS ONE 8: e77261.
    • (2013) PLoS ONE , vol.8
    • Shaik, R.1    Ramakrishna, W.2
  • 59
    • 84891802623 scopus 로고    scopus 로고
    • Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice
    • Shaik R, Ramakrishna W (2014) Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice. Plant Physiol 164: 481-495.
    • (2014) Plant Physiol , vol.164 , pp. 481-495
    • Shaik, R.1    Ramakrishna, W.2
  • 60
    • 84856170491 scopus 로고    scopus 로고
    • How do plants achieve immunity? Defence without specialized immune cells
    • Spoel SH, Dong X (2012) How do plants achieve immunity? Defence without specialized immune cells. Nat Rev Immunol 12: 89-100.
    • (2012) Nat Rev Immunol , vol.12 , pp. 89-100
    • Spoel, S.H.1    Dong, X.2
  • 61
    • 0029310678 scopus 로고
    • Plant protein kinase families and signal transduction
    • Stone JM, Walker JC (1995) Plant protein kinase families and signal transduction. Plant Physiol 108: 451-457.
    • (1995) Plant Physiol , vol.108 , pp. 451-457
    • Stone, J.M.1    Walker, J.C.2
  • 62
    • 0037324536 scopus 로고    scopus 로고
    • Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae
    • Tao Y, Xie Z, Chen W, Glazebrook J, Chang HS, Han B, Zhu T, Zou G, Katagiri F (2003) Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell 15: 317-330.
    • (2003) Plant Cell , vol.15 , pp. 317-330
    • Tao, Y.1    Xie, Z.2    Chen, W.3    Glazebrook, J.4    Chang, H.S.5    Han, B.6    Zhu, T.7    Zou, G.8    Katagiri, F.9
  • 63
    • 80053923336 scopus 로고    scopus 로고
    • Protein kinase signaling networks in plant innate immunity
    • Tena G, Boudsocq M, Sheen J (2011) Protein kinase signaling networks in plant innate immunity. Curr Opin Plant Biol 14: 519-529.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 519-529
    • Tena, G.1    Boudsocq, M.2    Sheen, J.3
  • 66
    • 33646853523 scopus 로고    scopus 로고
    • Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance
    • Truman W, de Zabala MT, Grant M (2006) Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. Plant J 46: 14-33.
    • (2006) Plant J , vol.46 , pp. 14-33
    • Truman, W.1    de Zabala, M.T.2    Grant, M.3
  • 67
    • 77955089469 scopus 로고    scopus 로고
    • Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity
    • Tsuda K, Katagiri F (2010) Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity. Curr Opin Plant Biol 13: 459-465.
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 459-465
    • Tsuda, K.1    Katagiri, F.2
  • 69
    • 84871911095 scopus 로고    scopus 로고
    • The MORPH algorithm: Ranking candidate genes for membership in Arabidopsis and tomato pathways
    • Tzfadia O, Amar D, Bradbury LMT, Wurtzel ET, Shamir R (2012) The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways. Plant Cell 24: 4389-4406.
    • (2012) Plant Cell , vol.24 , pp. 4389-4406
    • Tzfadia, O.1    Amar, D.2    Bradbury, L.M.T.3    Wurtzel, E.T.4    Shamir, R.5
  • 70
    • 65849100458 scopus 로고    scopus 로고
    • Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
    • Vlasblom J, Wodak SJ (2009) Markov clustering versus affinity propagation for the partitioning of protein interaction graphs. BMC Bioinformatics 10: 99.
    • (2009) BMC Bioinformatics , vol.10 , pp. 99
    • Vlasblom, J.1    Wodak, S.J.2
  • 71
    • 33845311536 scopus 로고    scopus 로고
    • Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping
    • Walhout AJM (2006) Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping. Genome Res 16: 1445-1454.
    • (2006) Genome Res , vol.16 , pp. 1445-1454
    • Walhout, A.J.M.1
  • 72
    • 33751415153 scopus 로고    scopus 로고
    • A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants
    • Wang D, Amornsiripanitch N, Dong X (2006) A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathog 2: e123.
    • (2006) PLoS Pathog , vol.2
    • Wang, D.1    Amornsiripanitch, N.2    Dong, X.3
  • 73
    • 79959924281 scopus 로고    scopus 로고
    • Multiple roles of WIN3 in regulating disease resistance, cell death, and flowering time in Arabidopsis
    • Wang GF, Seabolt S, Hamdoun S, Ng G, Park J, Lu H (2011a) Multiple roles of WIN3 in regulating disease resistance, cell death, and flowering time in Arabidopsis. Plant Physiol 156: 1508-1519.
    • (2011) Plant Physiol , vol.156 , pp. 1508-1519
    • Wang, G.F.1    Seabolt, S.2    Hamdoun, S.3    Ng, G.4    Park, J.5    Lu, H.6
  • 75
    • 84875500553 scopus 로고    scopus 로고
    • The Arabidopsis elongator complex subunit2 epigenetically regulates plant immune responses
    • Wang Y, An C, Zhang X, Yao J, Zhang Y, Sun Y, Yu F, Amador DM, Mou Z (2013) The Arabidopsis elongator complex subunit2 epigenetically regulates plant immune responses. Plant Cell 25: 762-776.
    • (2013) Plant Cell , vol.25 , pp. 762-776
    • Wang, Y.1    An, C.2    Zhang, X.3    Yao, J.4    Zhang, Y.5    Sun, Y.6    Yu, F.7    Amador, D.M.8    Mou, Z.9
  • 78
    • 0034057586 scopus 로고    scopus 로고
    • Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana
    • Wu K, Tian L, Malik K, Brown D, Miki B (2000) Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana. Plant J 22: 19-27.
    • (2000) Plant J , vol.22 , pp. 19-27
    • Wu, K.1    Tian, L.2    Malik, K.3    Brown, D.4    Miki, B.5
  • 80
    • 39849096564 scopus 로고    scopus 로고
    • Control of flowering time and cold response by a NAC-domain protein in Arabidopsis
    • Yoo SY, Kim Y, Kim SY, Lee JS, Ahn JH (2007) Control of flowering time and cold response by a NAC-domain protein in Arabidopsis. PLoS ONE 2: e642.
    • (2007) PLoS ONE , vol.2
    • Yoo, S.Y.1    Kim, Y.2    Kim, S.Y.3    Lee, J.S.4    Ahn, J.H.5
  • 81
    • 84863337512 scopus 로고    scopus 로고
    • Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NBLRR protein SUMM2
    • Zhang Z, Wu Y, Gao M, Zhang J, Kong Q, Liu Y, Ba H, Zhou J, Zhang Y (2012) Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NBLRR protein SUMM2. Cell Host Microbe 11: 253-263.
    • (2012) Cell Host Microbe , vol.11 , pp. 253-263
    • Zhang, Z.1    Wu, Y.2    Gao, M.3    Zhang, J.4    Kong, Q.5    Liu, Y.6    Ba, H.7    Zhou, J.8    Zhang, Y.9
  • 82
    • 33847204698 scopus 로고    scopus 로고
    • Functional analysis of Arabidopsis WRKY25 transcription factor in plant defense against Pseudomonas syringae
    • Zheng Z, Mosher SL, Fan B, KlessigDF, Chen Z (2007) Functional analysis of Arabidopsis WRKY25 transcription factor in plant defense against Pseudomonas syringae. BMC Plant Biol 7: 2.
    • (2007) BMC Plant Biol , vol.7 , pp. 2
    • Zheng, Z.1    Mosher, S.L.2    Fan, B.3    Klessig, D.F.4    Chen, Z.5
  • 83
    • 33750554911 scopus 로고    scopus 로고
    • Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens
    • Zheng Z, Qamar SA, Chen Z, Mengiste T (2006) Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant J 48: 592-605.
    • (2006) Plant J , vol.48 , pp. 592-605
    • Zheng, Z.1    Qamar, S.A.2    Chen, Z.3    Mengiste, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.