Mechanisms underlying robustness and tunability in a plant immune signaling network

Cell Host and Microbe

Volumn 15, Issue 1, 2014, Pages 84-94

  Kim, Yungil ^a   Tsuda, Kenichi ^b,c   Igarashi, Daisuke ^b,d   Hillmer, Rachel A ^b   Sakakibara, Hitoshi ^e   Myers, Chad L ^a   Katagiri, Fumiaki ^b  

^a University of Minnesota   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

^c MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^d AJINOMOTO CO INC   (Japan)

^e RIKEN Center for Sustainable Resource Science   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ETHYLENE; JASMONIC ACID; PHYTOALEXIN; SALICYLIC ACID;

ARTICLE; BACTERIAL COUNT; BACTERIAL GROWTH; BACTERIAL STRAIN; GENOTYPE; IMMUNE RESPONSE; MULTIPLE REGRESSION; NONHUMAN; PLANT IMMUNITY; POSITIVE FEEDBACK; PREDICTION; PRIORITY JOURNAL; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CARBOXYLIC ESTER HYDROLASES; CHITOSAN; CYCLOPENTANES; ETHYLENES; GENE EXPRESSION REGULATION, PLANT; MODELS, BIOLOGICAL; OXYLIPINS; PLANT DISEASES; PLANT IMMUNITY; PROTEIN KINASES; PSEUDOMONAS SYRINGAE; REGRESSION ANALYSIS; SALICYLIC ACID; SIGNAL TRANSDUCTION;

EID: 84892592157     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2013.12.002     Document Type: Article

References (36)

1. J.M. Alonso, T. Hirayama, G. Roman, S. Nourizadeh, and J.R. Ecker EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis Science 284 1999 2148 2152
2. T. Boller, and G. Felix A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors Annu. Rev. Plant Biol. 60 2009 379 406
3. D. Chinchilla, Z. Bauer, M. Regenass, T. Boller, and G. Felix The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception Plant Cell 18 2006 465 476
4. P.R. Davidsson, T. Kariola, O. Niemi, and E.T. Palva Pathogenicity of and plant immunity to soft rot pectobacteria Front Plant Sci 4 2013 191
5. R. de Jonge, H.P. van Esse, A. Kombrink, T. Shinya, Y. Desaki, R. Bours, S. van der Krol, N. Shibuya, M.H. Joosten, and B.P. Thomma Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants Science 329 2010 953 955
6. P.N. Dodds, and J.P. Rathjen Plant immunity: towards an integrated view of plant-pathogen interactions Nat. Rev. Genet. 11 2010 539 548
7. J.E. Ferrell, and W. Xiong Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible Chaos 11 2001 227 236
8. J. Friedman, T. Hastie, and R. Tibshirani Regularization Paths for Generalized Linear Models via Coordinate Descent J. Stat. Softw. 33 2010 1 22
9. J. Glazebrook Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens Annu. Rev. Phytopathol. 43 2005 205 227
10. J. Glazebrook, W. Chen, B. Estes, H.S. Chang, C. Nawrath, J.P. Métraux, T. Zhu, and F. Katagiri Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping Plant J. 34 2003 217 228
11. T. Hastie, R. Tibshirani, and J. Friedman The Elements of Statistical Learning Second Edition 2009 Springer New York
12. D. Jirage, T.L. Tootle, T.L. Reuber, L.N. Frost, B.J. Feys, J.E. Parker, F.M. Ausubel, and J. Glazebrook Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling Proc. Natl. Acad. Sci. USA 96 1999 13583 13588
13. J.D. Jones, and J.L. Dangl The plant immune system Nature 444 2006 323 329
14. F. Katagiri, and K. Tsuda Understanding the plant immune system Mol. Plant Microbe Interact. 23 2010 1531 1536
15. M. Kojima, and H. Sakakibara Highly sensitive high-throughput profiling of six phytohormones using MS-probe modification and liquid chromatography- tandem mass spectrometry Methods Mol. Biol. 918 2012 151 164
16. M. Kojima, T. Kamada-Nobusada, H. Komatsu, K. Takei, T. Kuroha, M. Mizutani, M. Ashikari, M. Ueguchi-Tanaka, M. Matsuoka, K. Suzuki, and H. Sakakibara Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa Plant Cell Physiol. 50 2009 1201 1214
17. S. Lacombe, A. Rougon-Cardoso, E. Sherwood, N. Peeters, D. Dahlbeck, H.P. van Esse, M. Smoker, G. Rallapalli, B.P. Thomma, and B. Staskawicz et al. Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance Nat. Biotechnol. 28 2010 365 369
18. M. Lindeberg, S. Cunnac, and A. Collmer Pseudomonas syringae type III effector repertoires: last words in endless arguments Trends Microbiol. 20 2012 199 208
19. A. Miya, P. Albert, T. Shinya, Y. Desaki, K. Ichimura, K. Shirasu, Y. Narusaka, N. Kawakami, H. Kaku, and N. Shibuya CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis Proc. Natl. Acad. Sci. USA 104 2007 19613 19618
20. J.H. Park, R. Halitschke, H.B. Kim, I.T. Baldwin, K.A. Feldmann, and R. Feyereisen A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis Plant J. 31 2002 1 12
21. Y. Saijo, N. Tintor, X. Lu, P. Rauf, K. Pajerowska-Mukhtar, H. Häweker, X. Dong, S. Robatzek, and P. Schulze-Lefert Receptor quality control in the endoplasmic reticulum for plant innate immunity EMBO J. 28 2009 3439 3449
22. M. Sato, K. Tsuda, L. Wang, J. Coller, Y. Watanabe, J. Glazebrook, and F. Katagiri Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling PLoS Pathog. 6 2010 e1001011
23. J. Shah The salicylic acid loop in plant defense Curr. Opin. Plant Biol. 6 2003 365 371
24. A. Silipo, G. Erbs, T. Shinya, J.M. Dow, M. Parrilli, R. Lanzetta, N. Shibuya, M.A. Newman, and A. Molinaro Glyco-conjugates as elicitors or suppressors of plant innate immunity Glycobiology 20 2010 406 419
25. S.H. Spoel, J.S. Johnson, and X. Dong Regulation of tradeoffs between plant defenses against pathogens with different lifestyles Proc. Natl. Acad. Sci. USA 104 2007 18842 18847
26. K. Tsuda, and F. Katagiri Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity Curr. Opin. Plant Biol. 13 2010 459 465
27. K. Tsuda, M. Sato, J. Glazebrook, J.D. Cohen, and F. Katagiri Interplay between MAMP-triggered and SA-mediated defense responses Plant J. 53 2008 763 775
28. K. Tsuda, M. Sato, T. Stoddard, J. Glazebrook, and F. Katagiri Network properties of robust immunity in plants PLoS Genet. 5 2009 e1000772
29. D. Van der Does, A. Leon-Reyes, A. Koornneef, M.C. Van Verk, N. Rodenburg, L. Pauwels, A. Goossens, A.P. Körbes, J. Memelink, and T. Ritsema et al. Salicylic acid suppresses jasmonic acid signaling downstream of SCFCOI1-JAZ by targeting GCC promoter motifs via transcription factor ORA59 Plant Cell 25 2013 744 761
30. A.C. Vlot, D.A. Dempsey, and D.F. Klessig Salicylic Acid, a multifaceted hormone to combat disease Annu. Rev. Phytopathol. 47 2009 177 206
31. J.R. Wan, X.C. Zhang, D. Neece, K.M. Ramonell, S. Clough, S.Y. Kim, M.G. Stacey, and G. Stacey A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis Plant Cell 20 2008 471 481
32. M. Wiermer, B.J. Feys, and J.E. Parker Plant immunity: the EDS1 regulatory node Curr. Opin. Plant Biol. 8 2005 383 389
33. M.C. Wildermuth, J. Dewdney, G. Wu, and F.M. Ausubel Isochorismate synthase is required to synthesize salicylic acid for plant defence Nature 414 2001 562 565
34. R. Willmann, H.M. Lajunen, G. Erbs, M.A. Newman, D. Kolb, K. Tsuda, F. Katagiri, J. Fliegmann, J.J. Bono, and J.V. Cullimore et al. Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection Proc. Natl. Acad. Sci. USA 108 2011 19824 19829
35. C. Zipfel, S. Robatzek, L. Navarro, E.J. Oakeley, J.D. Jones, G. Felix, and T. Boller Bacterial disease resistance in Arabidopsis through flagellin perception Nature 428 2004 764 767
36. C. Zipfel, G. Kunze, D. Chinchilla, A. Caniard, J.D. Jones, T. Boller, and G. Felix Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation Cell 125 2006 749 760