Annual research review: Growth connectomics - The organization and reorganization of brain networks during normal and abnormal development

Journal of Child Psychology and Psychiatry and Allied Disciplines

Volumn 56, Issue 3, 2015, Pages 299-320

  Vértes, Petra E ^a,b   Bullmore, Edward T ^a,b,c  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b CAMBRIDGESHIRE AND PETERBOROUGH NHS FOUNDATION TRUST   (United Kingdom)

^c GLAXOSMITHKLINE   (United States)

Author keywords

Brain networks; cognitive change; connectomics; development; neurodevelopmental disorders

Indexed keywords

BRAIN; CHILD; CHILD DEVELOPMENT; CONNECTOME; ELECTROENCEPHALOGRAPHY; HUMAN; MAGNETOENCEPHALOGRAPHY; MENTAL DISEASE; NUCLEAR MAGNETIC RESONANCE IMAGING; PATHOPHYSIOLOGY; PHYSIOLOGY;

BRAIN; CHILD; CHILD DEVELOPMENT; CONNECTOME; ELECTROENCEPHALOGRAPHY; HUMANS; MAGNETIC RESONANCE IMAGING; MAGNETOENCEPHALOGRAPHY; NEURODEVELOPMENTAL DISORDERS;

EID: 84923595533     PISSN: 00219630     EISSN: 14697610     Source Type: Journal    
DOI: 10.1111/jcpp.12365     Document Type: Article

References (179)

1. Achard, S., &, Bullmore, E.T., (2007). Efficiency and cost of economical brain functional networks. PLoS Computational Biology, 3, e17.
2. Achard, S., Delon-Martin, C., Vértes, P.E., Renard, F., Schenck, M., Schneider, F.,... &, Bullmore, E.T., (2012). Hubs of brain functional networks are radically reorganized in comatose patients. Proceedings of the National Academy of Sciences of the United States of America, 109, 20608-20613.
3. Achard, S., Salvador, R., Whitcher, B., Suckling, J., &, Bullmore, E.T., (2006). A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs. The Journal of Neuroscience, 26, 63-72.
4. Albert, R., Jeong, H., &, Barabási, A.-L., (2000). Error and attack tolerance of complex networks. Nature, 406, 378-382.
5. Alexander-Bloch, A.F., Giedd, J.N., Bullmore, E.T., &, Giedd, J.N., (2013). Imaging structural co-variance between human brain regions. Nature Reviews Neuroscience, 14, 322-336.
6. Alexander-Bloch, A.F., Raznahan, A., Bullmore, E.T., &, Giedd, J.N., (2013). The convergence of maturational change and structural covariance in human cortical networks. The Journal of Neuroscience, 33, 2889-2899.
7. Alexander-Bloch, A.F., Reiss, P.T., Rapoport, J., McAdams, H., Giedd, J.N., Bullmore, E.T., &, Gogtay, N., (2014). Abnormal cortical growth in schizophrenia targets normative modules of synchronized development. Biological Psychiatry, 76, 438-446.
8. Alexander-Bloch, A.F., Vértes, P.E., Stidd, R., Lalonde, F., Clasen, L., Rapoport, J.L.,... &, Gotay, N., (2012). The anatomical distance of functional connections predicts brain network topology in health and schizophrenia. Cerebral Cortex, 23, 127-138.
9. Anagnostou, E., &, Taylor, M., (2011). Review of neuroimaging in autism spectrum disorders: what have we learned and where we go from here. Molecular Autism, 2, 4.
10. Aoki, Y., Abe, O., Nippashi, Y., &, Yamasue, H., (2013). Comparison of white matter integrity between autism spectrum disorder subjects and typically developing individuals: a meta-analysis of diffusion tensor imaging tractography studies. Molecular Autism, 4, 25.
11. Barabási, A.-L., &, Albert, R., (1999). Emergence of scaling in random networks. Science, 286, 509-512.
12. Bassett, D.S., Bullmore, E.T., Verchinski, B.A., Mattay, V.S., Weinberger, D.R., &, Meyer-Lindenberg, A., (2008). Hierarchical organization of human cortical networks in health and schizophrenia. The Journal of Neuroscience, 28, 9239-9248.
13. Bathelt, J., O'Reilly, H., Clayden, J.D., Cross, J.H., &, de Haan, M., (2013). Functional brain network organisation of children between 2 and 5 years derived from reconstructed activity of cortical sources of high-density EEG recordings. NeuroImage, 82, 595-604.
14. Benowitz, L.I., &, Routtenberg, A., (1997). Gap-43: an intrinsic determinant of neuronal development and plasticity. Trends in Neurosciences, 20, 84-91.
15. Biswal, B., Yetkin, F.Z., Haughton, V.M., &, Hyde, J.S., (1995). Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magnetic Resonance in Medicine, 34, 537-541.
16. Blankenship, A.G., &, Feller, M.B., (2010). Mechanisms underlying spontaneous patterned activity in developing neural circuits. Nature Reviews Neuroscience, 11, 18-29.
17. Boersma, M., Smit, D.J.A., de Bie, H.M.A., Van Baal, G.C.M., Boomsma, D.I., de Geus, E.J.C.,... &, Stam, C.J., (2011). Network analysis of resting state EEG in the developing young brain: structure comes with maturation. Human Brain Mapping, 32, 413-425.
18. Bragin, A., Engel, J. Jr, &, Staba, R.J., (2010). High-frequency oscillations in epileptic brain. Current Opinion in Neurology, 23, 151-156.
19. Bright, M.G., &, Murphy, K., (2013). Removing motion and physiological artifacts from intrinsic bold fluctuations using short echo data. NeuroImage, 64, 526-537.
20. Buckner, R., Sepulcre, J., Talukdar, T., &, Krienen, F., (2009). Cortical hubs revealed by intrinsic functional connectivity: Mapping, assessment of stability, and relation to alzheimer's disease. The Journal of Neuroscience, 29, 1860-1873.
21. Bullmore, E.T., &, Sporns, O., (2009). Complex brain networks: graph theoretical analysis of structural and functional systems. Nature Reviews Neuroscience, 10, 186-198.
22. Bullmore, E.T., &, Sporns, O., (2012). The economy of brain network organization. Nature Reviews Neuroscience, 13, 467-482.
23. Cabral, J., Fernandez, H.M., Hartevelt, V.T.J., James, A.C., Kringelbach, M.L., &, Deco, G., (2013). Structural connectivity in schizophrenia and its impact on the dynamics of spontaneous functional networks. Chaos: An Interdisciplinary Journal of Nonlinear Science, 23, 046111.
24. Cao, M., Wang, J.H., Dai, Z.J., Cao, X.Y., Jiang, L.L., Fan, F.M.,... &, He, Y., (2014). Topological organization of the human brain functional connectome across the lifespan. Developmental Cognitive Neuroscience, 7, 76-93.
25. Cascio, C.J., Gerig, G., &, Piven, J., (2007). Diffusion tensor imaging: application to the study of the developing brain. Journal of the American Academy of Child and Adolescent Psychiatry, 46, 213-223.
26. Chang, C., &, Glover, G.H., (2010). Time-frequency dynamics of resting-state brain connectivity measured with fMRI. NeuroImage, 50, 81-98.
27. Chen, B.L., Hall, D.H., &, Chklovskii, D.B., (2006). Wiring optimization can relate neuronal structure and function. Proceedings of the National Academy of Sciences of the United States of America, 103, 4723-4728.
28. Chen, Z.J., He, Y., Rosa-Neto, P., Germann, J., &, Evans, A.C., (2008). Revealing modular architecture of human brain structural networks by using cortical thickness from MRI. Cerebral Cortex, 18, 2374-2381.
29. Cherniak, C., (1994). Component placement optimization in the brain. The Journal of Neuroscience, 14, 2418-2427.
30. Cherniak, C., Mokhtarzada, Z., Rodriguez-Esteban, R., &, Changizi, K., (2004). Global optimization of cerebral cortex layout. Proceedings of the National Academy of Sciences of the United States of America, 101, 1081-1086.
31. Chiappalone, M., Bove, M., Vato, A., Tedesco, M., &, Martinoia, S., (2006). Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development. Brain Research, 1093, 41-53.
32. Chklovskii, D.B., Schikorski, T., &, Stevens, C.F., (2002). Wiring optimization in cortical circuits. Neuron, 34, 341-347.
33. Chung, K., Wallace, J., Kim, S.Y., Kalyanasundaram, S., Andalman, A.S., Davidson, T.J.,... &, Deisseroth, K., (2013). Structural and molecular interrogation of intact biological systems. Nature, 497, 332-337.
34. Collin, G., &, van den Heuvel, M.P., (2013). The ontogeny of the human connectome: Development and dynamic changes of brain connectivity across the life span. The Neuroscientist, 19, 616-628.
35. Crossley, N.A., Mechelli, A., Scott, J., Carletti, F., Fox, P.T., McGuire, P., &, Bullmore, E.T., (2014). The hubs of the human connectome are generally implicated in the anatomy of brain disorders. Brain, 137, 2382-2395.
36. Crossley, N.A., Mechelli, A., Vértes, P.E., Winton-Brown, T., Patel, A.X., Ginestet, C.E.,... &, Bullmore, E.T., (2013). Cognitive relevance of the community structure of the human brain functional coactivation network. Proceedings of the National Academy of Sciences of the United States of America, 110, 11583-11588.
37. Damaraju, E., Caprihan, A., Lowe, J.R., Allen, E.A., Calhoun, V.D., &, Phillips, J.P., (2014). Functional connectivity in the developing brain: A longitudinal study from 4 to 9 months of age. NeuroImage, 84, 169-180.
38. Dehaene, S., Kerszberg, M., &, Changeux, J.-P., (1999). A neuronal model of a global workspace in effortful cognitive task. Proceedings of the National Academy of Sciences of the United States of America, 95, 14529-14534.
39. Dennis, E.L., Jahanshad, N., McMahon, K.L., de Zubicaray, G.I., Martin, N.G., Hickie, I.B.,... &, Thompson, P.M., (2013). Development of brain structural connectivity between ages 12 and 30: A 4-tesla diffusion imaging study in 439 adolescents and adults. NeuroImage, 64, 671-684.
40. Di Martino, A., Zuo, X.N., Kelly, C., Grzadzinski, R., Mennes, M., Schvarcz, A.,... &, Milham, M.P., (2013). Shared and distinct intrinsic functional network centrality in autism and attention-deficit/hyperactivity disorder. Biological Psychiatry, 74, 623-632.
41. Dosenbach, N.U.F., Nardos, B., Cohen, A.L., Fair, D.A., Church, J.A., Nelson, S.M.,... &, Schlaggar, B.L., (2010). Prediction of individual brain maturity using fMRI. Science, 329, 1358-1361.
42. Downes, J.H., Hammond, M.W., Xydas, D., Spencer, M.C., Becerra, V.M., Warwick, K.,... &, Nasuto, S.J., (2012). Emergence of a small-world functional network in cultured neurons. PLoS Computational Biology, 8, e1002522.
43. Dubois, J., Hertz-Pannier, L., Dehaene-Lambertz, G., Cointepas, Y., &, Le Bihan, D., (2006). Assessment of the early organization and maturation of infants' cerebral white matter fiber bundles: a feasibility study using quantitative diffusion tensor imaging and tractography. NeuroImage, 30, 1121-1132.
44. Dziobek, I., Bahnemann, M., Convit, A., &, Heekeren, H.R., (2010). The role of the fusiform-amygdala system in the pathophysiology of autism. Archives of General Psychiatry, 67, 397-405.
45. Egorov, A.V., &, Draguhn, A., (2013). Development of coherent neuronal activity patterns in mammalian cortical networks: Common principles and local hetereogeneity. Mechanisms of Development, 130, 412-423.
46. Fair, D.A., Cohen, A.L., Power, J.D., Dosenbach, N.U.F., Church, J.A., Miezin, F.M.,... &, Petersen, S.E., (2009). Functional brain networks develop from a "local to distributed" organization. PLoS Computational Biology, 5, e1000381.
47. Fair, D.A., Dosenbach, N.U.F., Church, J.A., Cohen, A.L., Brahmbhatt, S., Miezin, F.M.,... &, Schlaggar, B.L., (2007). Development of distinct control networks through segregation and integration. Proceedings of the National Academy of Sciences of the United States of America, 104, 13507-13512.
48. Fan, Y., Shi, F., Smith, J.K., Lin, W., Gilmore, J.H., &, Shen, D., (2011). Brain anatomical networks in early human brain development. NeuroImage, 54, 1862-1871.
49. Fornari, E., Knyazeva, M.G., Meuli, R., &, Maeder, P., (2007). Myelination shapes functional activity in the developing brain. NeuroImage, 38, 511-518.
50. Fornito, A., &, Bullmore, E.T,. (2014). Connectomics: A new paradigm for understanding brain disease. European Neuropsychopharmacology. Advance Online publication. doi: 10.1016/j.euroneuro.2014.02.011.
51. Fox, M.D., Snyder, A.Z., Vincent, J.L., Corbetta, M., Van Essen, D.C., &, Raichle, M.E., (2005). The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proceedings of the National Academy of Sciences of the United States of America, 102, 9673-9678.
52. Fransson, P., Åden, U., Blennow, M., &, Lagercrantz, H., (2011). The functional architecture of the infant brain as revealed by resting-state fMRI. Cerebral Cortex, 21, 145-154.
53. Fransson, P., Metsäranta, M., Blennow, M., Åden, U., Lagercrantz, H., &, Vanhatalo, S., (2013). Early development of spatial patterns of power-law frequency scaling in fMRI resting-state and EEG data in the newborn brain. Cerebral Cortex, 23, 638-646.
54. Fransson, P., Skiöld, B., Engström, M., Hallberg, B., Mosskin, M., Åden, U.,... &, Blennow, M., (2009). Spontaneous brain activity in the newborn brain during natural sleep-an fMRI study in infants born at full term. Pediatric Research, 66, 301-305.
55. Fransson, P., Sklold, B., Horsch, S., Nordell, A., Blennow, M., Lagercrantz, H., &, Åden, U., (2007). Resting-state networks in the infant brain. Proceedings of the National Academy of Sciences of the United States of America, 104, 15531-15536.
56. Gao, W., Alcauter, S., Smith, J.K., Gilmore, J.H., &, Lin, W,. (2014). Development of human brain cortical network architecture during infancy. Brain Structure and Function, 1-14.
57. Gao, W., Gilmore, J.H., Giovanello, K.S., Smith, J.K., Shen, D., Zhu, H., &, Lin, W., (2011). Temporal and spatial evolution of brain network topology during the first two years of life. PLoS One, 6, e25278.
58. Gao, W., Zhu, H., Giovanello, K.S., Smith, J.K., Shen, D., Gilmore, J.H., &, Lin, W., (2009). Evidence on the emergence of the brain's default network from 2-week-old to 2-year-old healthy pediatric subjects. Proceedings of the National Academy of Sciences of the United States of America, 106, 6790-6795.
59. Giedd, J.N., Blumenthal, J., Jeffries, N.O., Castellanos, F.X., Liu, H., Zijdenbos, A.,... &, Rapoport, J.L., (1999). Brain development during childhood and adolescence: A longitudinal MRI study. Nature Neuroscience, 2, 861-863.
60. Giedd, J.N., &, Rapoport, J.L., (2010). Structural MRI of pediatric brain development: What have we learned and where are we going? Neuron, 67, 728-733.
61. Giorgio, A., Watkins, K.E., Douaud, G., James, A.C., James, S., De Stefano, N.,... &, Johansen-Berg, H., (2008). Changes in white matter microstructure during adolescence. NeuroImage, 39, 52-61.
62. Glasser, M.F., &, Van Essen, D.C., (2011). Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. The Journal of Neuroscience, 31, 11579-11616.
63. Gogtay, N., Giedd, J.N., Lusk, L., Hayashi, K.M., Greenstein, D., Vaituzis, A.C.,... &, Thompson, P.M., (2004). Dynamic mapping of human cortical development during childhood through early adulthood. Proceedings of the National Academy of Sciences of the United States of America, 101, 8174-8179.
64. Gong, G., He, Y., Chen, Z.J., &, Evans, A.C., (2012). Convergence and divergence of thickness correlations with diffusion connections across the human cerebral cortex. NeuroImage, 59, 1239-1248.
65. Gong, G., He, Y., &, Evans, A.C., (2011). Brain connectivity gender makes a difference. The Neuroscientist, 17, 575-591.
66. Gong, G., Rosa-Neto, P., Carbonell, F., Chen, Z.J., He, Y., &, Evans, A.C., (2009). Age- and gender-related differences in the cortical anatomical network. The Journal of Neuroscience, 29, 15684-15693.
67. Gordon, E.M., Lee, P.S., Maisog, J.M., Foss-Feig, J., Billington, M.E., Van Meter, J., &, Vaidya, C.J., (2011). Strength of default mode resting-state connectivity relates to white matter integrity in children. Developmental Science, 14, 738-751.
68. Greicius, M.D., Krasnow, B., Reiss, A.L., &, Menon, V., (2003). Functional connectivity in the resting brain: A network analysis of the default mode hypothesis. Proceedings of the National Academy of Sciences of the United States of America, 100, 253-258.
69. Hagmann, P., Grant, P.E., &, Fair, D.A., (2012). MR connectomics: a conceptual framework for studying the developing brain. Frontiers in Systems Neuroscience, 6, 43.
70. Hagmann, P., Kurant, M., Gigandet, X., Thiran, P., Wedeen, V.J., Meuli, R., &, Thiran, J.P., (2007). Mapping human whole-brain structural networks with diffusion MRI. PLoS One, 2, e597.
71. Hagmann, P., Sporns, O., Madan, N., Cammoun, L., Pienaar, R., Wedeen, V.J., &, Grant, P.E., (2010). White matter maturation reshapes structural connectivity in the late developing human brain. Proceedings of the National Academy of Sciences of the United States of America, 107, 19067-19072.
72. Hallquist, M.N., Hwang, K., &, Luna, B., (2013). The nuisance of nuisance regression: spectral misspecification in a common approach to resting-state fMRI preprocessing reintroduces noise and obscures functional connectivity. NeuroImage, 82, 208-225.
73. He, Y., Chen, Z.J., &, Evans, A.C., (2007). Small-world anatomical networks in the human brain revealed by cortical thickness from MRI. Cerebral Cortex, 17, 2407-2419.
74. Henderson, J.A., &, Robinson, P.A., (2011). Geometric effects on complex network structure in the cortex. Physical Review Letters, 107, 018102.
75. Hermoye, L., Saint-Martin, C., Cosnard, G., Lee, S.-K., Kim, J., Nassogne, M.-C.,... &, Mori, S., (2006). Pediatric diffusion tensor imaging: normal database and observation of the white matter maturation in early childhood. NeuroImage, 29, 493-504.
76. van den Heuvel, M.P., Kahn, R.S., Goñi, J., &, Sporns, O., (2012). High-cost, high-capacity backbone for global brain communication. Proceedings of the National Academy of Sciences of the United States of America, 109, 11372-11377.
77. van den Heuvel, M.P., Stam, C.J., Kahn, R.S., &, Hulshoff Pol, H.E., (2009). Efficiency of functional brain networks and intellectual performance. The Journal of Neuroscience, 29, 7619-7624.
78. Honey, C.J., &, Sporns, O., (2008). Dynamical consequences of lesions in cortical networks. Human Brain Mapping, 29, 802-809.
79. Honey, C.J., Sporns, O., Cammoun, L., Gigandet, X., Thiran, J.P., Meuli, R., &, Hagmann, P., (2009). Predicting human resting-state functional connectivity from structural connectivity. Proceedings of the National Academy of Sciences of the United States of America, 106, 2035-2040.
80. Huang, H., Zhang, J., Wakana, S., Zhang, W., Ren, T., Richards, L.J.,... &, Mori, S., (2006). White and gray matter development in human fetal, newborn and pediatric brains. NeuroImage, 33, 27-38.
81. Huttenlocher, P.R., (1984). Synapse elimination and plasticity in developing human cerebral cortex. American Journal of Mental Deficiency, 88, 488-496.
82. Hwang, K., Hallquist, M.N., &, Luna, B., (2012). The development of hub architecture in the human functional brain network. Cerebral Cortex, 10, 2380-2393.
83. Innocenti, G.M., &, Price, D.J., (2005). Exuberance in the development of cortical networks. Nature Reviews Neuroscience, 6 (12), 955-965.
84. Kaiser, M., &, Hilgetag, C.C., (2004a). Modelling the development of cortical networks. Neurocomputing, 58, 297-302.
85. Kaiser, M., &, Hilgetag, C.C., (2004b). Spatial growth of real-world networks. Physical Review E, 69, 036103.
86. Kaiser, M., &, Hilgetag, C.C., (2006). Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems. PLoS Computational Biology, 2, e95.
87. Kaiser, M., Robert, M., Andras, P., &, Young, M.P., (2007). Simulation of robustness against lesions of cortical networks. European Journal of Neuroscience, 25, 3185-3192.
88. Kamioka, H., Maeda, E., Jimbo, Y., Robinson, H.P., &, Kawana, A., (1996). Spontaneous periodic synchronized bursting during formation of mature patterns of connections in cortical cultures. Neuroscience Letters, 206, 109-112.
89. Kashtan, N., &, Alon, U., (2005). Spontaneous evolution of modularity and network motifs. Proceedings of the National Academy of Sciences of the United States of America, 102, 13773-13778.
90. Kelly, A.M., Di Martino, A., Uddin, L.Q., Shehzad, Z., Gee, D.G., Reiss, P.T.,... &, Milham, M.P., (2009). Development of anterior cingulate functional connectivity from late childhood to early adulthood. Cerebral Cortex, 19, 640-657.
91. Kelly, C., Toro, R., Di Martino, A., Cox, C.L., Bellec, P., Castellanos, F.X.,... &, Milham, M.P., (2012). A convergent functional architecture of the insula emerges across imaging modalities. NeuroImage, 61, 1129-1142.
92. Khundrakpam, B.S., Reid, A., Brauer, J., Carbonell, F., Lewis, J., Ameis, S.,... &, Fadale, D., (2012). Developmental changes in organization of structural brain networks. Cerebral Cortex, 9, 2072-2085.
93. Kitzbichler, M.G., Henson, R.N., Smith, M.L., Nathan, P.J., &, Bullmore, E.T., (2011). Cognitive effort drives workspace configuration of human brain functional networks. The Journal of Neuroscience, 31, 8259-8270.
94. Klimm, F., Bassett, D.S., Carlson, J.M., &, Mucha, P.J,. (2013). Resolving structural variability in network models and the brain. PLoS Computational Biology, 10, e1003491.
95. Konrad, K., &, Eickhoff, S.B., (2010). Is the ADHD brain wired differently? A review on structural and functional connectivity in attention deficit hyperactivity disorder. Human Brain Mapping, 31, 904-916.
96. Kundu, P., Brenowitz, N.D., Voon, V., Worbe, Y., Vértes, P.E., Inati, S.J.,... &, Bullmore, E.T., (2013). Integrated strategy for improving functional connectivity mapping using multiecho fMRI. Proceedings of the National Academy of Sciences of the United States of America, 110, 16187-16192.
97. Latora, V., &, Marchiori, M., (2001). Efficient behaviour of small-world networks. Physical Review Letters, 87, 198701.
98. Lebel, C., &, Beaulieu, C., (2011). Longitudinal development of human brain wiring continues from childhood into adulthood. The Journal of Neuroscience, 31, 10937-10947.
99. Lebel, C., Gee, M., Camicioli, R., Wieler, M., Martin, W., &, Beaulieu, C., (2012). Diffusion tensor imaging of white matter tract evolution over the lifespan. NeuroImage, 60, 340-352.
100. Lee, W., Morgan, B.R., Shroff, M.M., Sled, J.G., &, Taylor, M.J., (2013). The development of regional functional connectivity in preterm infants into early childhood. Neuroradiology, 55, 105-111.
101. Lenroot, R.K., Gogtay, N., Greenstein, D.K., Wells, E.M., Wallace, G.L., Clasen, L.S.,... &, Giedd, J.N., (2007). Sexual dimorphism of brain developmental trajectories during childhood and adolescence. NeuroImage, 36, 1065-1073.
102. Lerch, J.P., Worsley, K., Shaw, W.P., Greenstein, D.K., Lenroot, R.K., Giedd, J.N., &, Evans, A.C., (2006). Mapping anatomical correlations across cerebral cortex (MACACC) using cortical thickness from MRI. NeuroImage, 31, 993-1003.
103. Lewis, C.M., Baldassarre, A., Committeri, G., Romani, G.L., &, Corbetta, M., (2009). Learning sculpts the spontaneous activity of the resting human brain. Proceedings of the National Academy of Sciences of the United States of America, 106 (41), 17558-17563.
104. Li, Y., Liu, Y., Li, J., Qin, W., Li, K., Yu, C., &, Jiang, T., (2009). Brain anatomical network and intelligence. PLoS Computational Biology, 5, e1000395.
105. Lim, S., Han, C.E., Uhlhaas, P.J., &, Kaiser, M., (2013). Preferential detachment during human brain development: Age-and sex-specific structural connectivity in diffusion tensor imaging (DTI) data. Cerebral Cortex. Advance Online publication. doi: 10.1093/cercor/bht333.
106. Lin, W., Zhu, Q., Gao, W., Chen, Y., Toh, C.H., Styner, M.,... &, Gilmore, J.H., (2008). Functional connectivity MR imaging reveals cortical functional connectivity in the developing brain. American Journal of Neuroradiology, 29, 1883-1889.
107. Liu, Y., Baleriaux, D., Kavec, M., Metens, T., Absil, J., Denolin, V.,... &, Aeby, A., (2010). Structural asymmetries in motor and language networks in a population of healthy preterm neonates at term equivalent age: a diffusion tensor imaging and probabilistic tractography study. NeuroImage, 51, 783-788.
108. Liu, W.-C., Flax, J.F., Guise, K.G., Sukul, V., &, Benasich, A.A., (2008). Functional connectivity of the sensorimotor area in naturally sleeping infants. Brain Research, 1223, 42-49.
109. Low, L.K., &, Cheng, H.-J., (2006). Axon pruning: An essential step underlying the developmental plasticity of neuronal connections. Philosophical Transactions of the Royal Society B: Biological Sciences, 361, 1531-1544.
110. Lowe, M.J., Mock, B.J., &, Sorenson, J.A., (1998). Functional connectivity in single and multislice echoplanar imaging using resting-state fluctuations. NeuroImage, 7, 119-132.
111. Luo, L., &, O'Leary, D.D.M., (2005). Axon retraction and degeneration in development and disease. Annual Review of Neuroscience, 28, 127-156.
112. Mancuso, J.J., Kim, J., Lee, S., Tsuda, S., Chow, N.B., &, Augustine, G.J., (2011). Optogenetic probing of functional brain circuitry. Experimental Physiology, 96 (1), 26-33.
113. Marom, S., &, Shahaf, G., (2002). Development, learning and memory in large random networks of cortical neurons: Lessons beyond anatomy. Quarterly Reviews of Biophysics, 35, 63-87.
114. McAlonan, G.M., Cheung, V., Cheung, C., Suckling, J., Lam, G.Y., Tai, K.S.,... &, Chua, S.E., (2005). Mapping the brain in autism a voxel-based MRI study of volumetric differences and intercorrelations in autism. Brain, 128, 268-276.
115. Mechelli, A., Friston, K.J., Frackowiak, R.S., &, Price, C.J., (2005). Structural covariance in the human cortex. The Journal of Neuroscience, 25, 8303-8310.
116. Menon, V., (2013). Developmental pathways to functional brain networks: Emerging principles. Trends in Cognitive Sciences, 17, 627-640.
117. Muramoto, K., Ichikawa, M., Kawahara, M., Kobayashi, K., &, Kuroda, Y., (1993). Frequency of synchronous oscillations of neuronal activity increases during development and is correlated to the number of synapses in cultured cortical neuron networks. Neuroscience Letters, 163, 163-165.
118. Newman, M.E.J., (2004). Fast algorithm for detecting community structure in networks. Physical Review E, 69, 066133.
119. Nicosia, V., Vértes, P.E., Schafer, W.R., Latora, V., &, Bullmore, E.T., (2013). Phase transition in the economically modeled growth of a cellular nervous system. Proceedings of the National Academy of Sciences of the United States of America, 110, 7880-7885.
120. Niven, J.E., &, Laughlin, S.B., (2008). Energy limitation as a selective pressure on the evolution of nervous systems. The Journal of Experimental Biology, 211, 1792-1804.
121. O'Connor, D.H., Huber, D., &, Svoboda, K., (2009). Reverse engineering the mouse brain. Nature, 461, 923-929.
122. Pakkenberg, B., &, Gundersen, H.J., (1997). Neocortical neuron number in humans: Effect of sex and age. Jounral of Comparative Neurology, 384, 312-320.
123. Patel, A.X., Kundu, P., Rubinov, M., Jones, P.S., Vértes, P.E., Ersche, K.D.,... &, Bullmore, E.T., (2014). A wavelet method for modeling and despiking motion artifacts from resting-state fMRI time series. NeuroImage, 95, 287-304.
124. Paus, T., (2010). Growth of white matter in the adolescent brain: Myelin or axon? Brain and Cognition, 72, 26-35.
125. Paus, T., Keshavan, M., &, Giedd, J.N., (2008). Why do many psychiatric disorders emerge during adolescence? Nature Reviews Neuroscience, 9, 947-957.
126. Peters, J.M., Taquet, M., Vega, C., Jeste, S.S., Fernandez, I.S., Tan, J.,... &, Warfield, S.K., (2013). Brain functional networks in syndromic and non-syndromic autism: A graph theoretical study of EEG connectivity. BMC Medical, 11, 54.
127. Power, J.D., Barnes, K.A., Snyder, A.Z., Schlaggar, B.L., &, Petersen, S.E., (2012). Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. NeuroImage, 59, 2142-2154.
128. Power, J.D., Cohen, A.L., Miezin, F.M., Schlaggar, B.L., &, Petersen, S.E., (2009). rs-fcMRI networks preferentially link auditory and sensorimotor mouth regions across development from 8-26 years of age. Paper presented at the Society for Neuroscience; Chicago, IL.
129. Power, J.D., Fair, D.A., Schlaggar, B.L., &, Petersen, S.E., (2010). The development of human functional brain networks. Neuron, 67, 735-746.
130. Qin, S., Young, C.B., Supekar, K., Uddin, L.Q., &, Menon, V., (2012). Immature integration and segregation of emotion-related brain circuitry in young children. Proceedings of the National Academy of Sciences of the United States of America, 109, 7941-7946.
131. Raichle, M.E., MacLeod, A.M., Snyder, A.Z., Powers, W.J., Gusnard, D.A., &, Shulman, G.L., (2001). A default mode of brain function. Proceedings of the National Academy of Sciences of the United States of America, 98, 676-682.
132. Raznahan, A., Lerch, J.P., Lee, N., Greenstein, D., Wallace, G.L., Stockman, M.,... &, Giedd, J.N., (2011). Patterns of coordinated anatomical change in human cortical development: A longitudinal neuroimaging study of maturational coupling. Neuron, 72, 873-884.
133. Rockel, A.J., Hiorns, R.W., &, Powell, T.P., (1980). The basic uniformity in structure of the neocortex. Brain, 103, 221-244.
134. Ronan, L., Voets, N., Rua, C., Alexander-Bloch, A.F., Hough, M., Mackay, C.,... &, Fletcher, P.C., (2013). Differential tangential expansion as a mechanism for cortical gyrification. Cerebral Cortex, 24, 2219-2228.
135. Rubinov, M., Sporns, O., Thivierge, J.P., &, Breakspear, M., (2011). Neurobiologically realistic determinants of self-organized criticality in networks of spiking neurons. PLoS Computational Biology, 7, e1002038.
136. Satterthwaite, T.D., Elliott, M.A., Gerraty, R.T., Ruparel, K., Loughead, J., Calkins, M.E.,... &, Wolf, D.H., (2013). An improved framework for confound regression and filtering for control of motion artifact in the preprocessing of resting-state functional connectivity data. NeuroImage, 64, 240-256.
137. Satterthwaite, T.D., Wolf, D.H., Loughead, J., Ruparel, K., Elliott, M.A., Hakonarson, H.,... &, Gur, R.E., (2012). Impact of in-scanner head motion on multiple measures of functional connectivity: Relevance for studies of neuro-development in youth. NeuroImage, 60, 623-632.
138. Scanziani, M., &, Häusser, M., (2009). Electrophysiology in the age of light. Nature, 461, 930-939.
139. Schmitt, J.E., Lenroot, R.K., Wallace, G.L., Ordaz, S., Taylor, K.N., Kabani, N.,... &, Giedd, J.N., (2008). Identification of genetically mediated cortical networks: A multivariate study of pediatric twins and siblings. Cerebral Cortex, 18, 1737-1747.
140. Seeley, W.W., Crawford, R.K., Zhou, J., Miller, B.L., &, Greicius, M.D., (2009). Neuro-degenerative diseases target large-scale human brain networks. Neuron, 62, 42-52.
141. Seeley, W.W., Menon, V., Schatzberg, A.F., Keller, J., Glover, G.H., Kenna, H.,... &, Greicius, M.D., (2007). Dissociable intrinsic connectivity networks for salience processing and executive control. The Journal of Neuroscience, 27, 2349-2356.
142. Shulman, G.L., Fiez, J.A., Corbetta, M., Buckner, R.L., Miezin, F.M., Raichle, M.E., &, Petersen, S.E., (1997). Common blood flow changes across visual tasks: II. decreases in cerebral cortex. Journal of Cognitive Neuroscience, 9, 648-663.
143. Simon, H.A., (1962). The architecture of complexity. Proceedings of the American Philosophical Society, 106, 336-349.
144. Smit, D.J.A., Boersma, M., Schnack, H.G., Micheloyannis, S., Boomsma, D.I., Hulshoff Pol, H.E.,... &, de Geus, E.J., (2012). The brain matures with stronger functional connectivity and decreased randomness of its network. PLoS One, 7, e36896.
145. Smit, D.J.A., Stam, C.J., Posthuma, D., Boomsma, D.I., &, de Geus, E.J.C., (2008). Heritability of "small-world" networks in the brain: A graph theoretical analysis of resting-state EEG functional connectivity. Human Brain Mapping, 29, 1368-1378.
146. Smyser, C.D., Inder, T.E., Shimony, J.S., Hill, J.E., Degnan, A.J., Snyder, A.Z., &, Neil, J.J., (2010). Longitudinal analysis of neural network development in preterm infants. Cerebral Cortex, 20, 2852-2862.
147. Snook, L., Paulson, L.A., Roy, D., Phillips, L., &, Beaulieu, C., (2005). Diffusion tensor imaging of neurodevelopment in children and young adults. NeuroImage, 26, 1164-1173.
148. de Solla Price, D.J., (1965). Networks of scientific papers. Science, 149, 510-515.
149. Song, S.-K., Sun, S.-W., Ramsbottome, M.J., Chang, C., Russell, J., &, Cross, A.H., (2002). Dysmyelination revealed through MRI as increased radial (but unchanged axial) diffusion of water. NeuroImage, 17, 1429-1436.
150. Sowell, E.R., Peterson, B.S., Kan, E., Woods, R.P., Yoshii, J., Bansal, R.,... &, Toga, A.W., (2007). Sex differences in cortical thickness mapped in 176 healthy individuals between 7 and 87 years of age. Cerebral Cortex, 17, 1550-1560.
151. Sporns, O., Tononi, G., &, Edelman, G.M., (2000). Theoretical neuroanatomy: relating anatomical and functional connectivity in graphs and cortical connection matrices. Cerebral Cortex, 10, 127-141.
152. Stam, C.J., &, van Straaten, E.C.W., (2012). The organization of physiological brain networks. Clinical Neurophysiology, 123, 1067-1087.
153. Stevens, W.D., Buckner, R.L., &, Schacter, D.L., (2010). Correlated low-frequency bold fluctuations in the resting human brain are modulated by recent experience in category-preferential visual regions. Cerebral Cortex, 20, 1997-2006.
154. Stiles, J., &, Jernigan, T.L., (2010). The basics of brain development. Neuropsychology Review, 20, 327-348.
155. Supekar, K., Musen, M., &, Menon, V., (2009). Development of large-scale functional brain networks in children. PLoS Biology, 7, e1000157.
156. Supekar, K., Uddin, L.Q., Prater, K., Amin, H., Greicius, M.D., &, Menon, V., (2010). Development of functional and structural connectivity within the default mode network in young children. NeuroImage, 52, 290-301.
157. Tambini, A., Ketz, N., &, Davachi, L., (2010). Enhanced brain correlations during rest are related to memory for recent experiences. Neuron, 65, 280-290.
158. Thomason, M.E., Dassanayake, M.T., Shen, S., Katkuri, Y., Alexis, M., Anderson, A.L.,... &, Romero, R., (2013). Cross-hemispheric functional connectivity in the human fetal brain. Science Translational Medicine, 5.
159. Towlson, E.K., Vértes, P.E., Ahnert, S.E., Schafer, W.R., &, Bullmore, E.T., (2013). The rich-club organization of the c. elegans neuronal connectome. The Journal of Neuroscience, 33, 12929-12939.
160. Tymofiyeva, O., Hess, C.P., Ziv, E., Lee, P.N., Glass, H.C., Ferriero, D.M.,... &, Xu, D., (2013). A DTI-based template-free cortical connectome study of brain maturation. PLoS One, 8, e63310.
161. Uddin, L.Q., Supekar, K.S., Ryali, S., &, Menon, V., (2011). Dynamic reconfiguration of structural and functional connectivity across core neurocognitive brain networks with development. The Journal of Neuroscience, 31, 18578-18589.
162. Van Dijk, K.R., Sabuncu, M.R., &, Buckner, R.L., (2012). The influence of head motion on intrinsic functional connectivity MRI. NeuroImage, 59, 431-438.
163. Van Someren, E.J., Van Der Werf, Y.D., Roelfsema, P.R., Mansvelder, H.D., &, da Silva, F.H., (2011). Slow brain oscillations of sleep, resting state, and vigilance. Progress in Brain Research, 193, 3-15.
164. Vértes, P.E., Alexander-Bloch, A.F., Gogtay, N., Giedd, J.N., Rapoport, J.L., &, Bullmore, E.T., (2012). Simple models of human brain functional networks. Proceedings of the National Academy of Sciences of the United States of America, 109, 5868-5873.
165. Vincent, J.L., Patel, G.H., Fox, M.D., Snyder, A.Z., Baker, J.T., Van Essen, D.C.,... &, Raichle, M.E., (2007). Intrinsic functional architecture in the anesthetized monkey brain. Nature, 447, 83-86.
166. Vogel, A.C., Church, J.A., Power, J.D., Cohen, A.L., Miezin, F.M., &, Schlaggar, B.L., (2009). Development of network structure in reading related regions. Paper presented at the Society for Neuroscience; Chicago, IL.
167. Vogel, A.C., Power, J.D., Petersen, S.E., &, Schlaggar, B.L., (2010). Development of the brain's functional network architecture. Neuropsychology Review, 20, 362-375.
168. Watts, D.J., &, Strogatz, S.H., (1998). Collective dynamics of 'small-world' networks. Nature, 393, 440-442.
169. White, L.E., Andrews, T.J., Hulette, C., Richards, A., Groelle, M., Paydarfar, J., &, Purves, D., (1997). Structure of the human sensorimotor system. II: lateral symmetry. Cerebral Cortex, 7, 31-47.
170. White, J.G., Southgate, E., Thomson, J.N., &, Brenner, S., (1986). The structure of the nervous system of the nematode Caenorhabditis elegans. Philosophical Transactions of the Royal Society B: Biological Sciences, 314, 1-340.
171. Wright, I.C., Sharma, T., Ellison, Z.R., McGuire, P.K., Friston, K.J., Brammer, M.J.,... &, Bullmore, E., (1999). Supraregional brain systems and the neuropathology of schizophrenia. Cerebral Cortex, 9, 366-378.
172. Wu, K., Taki, Y., Sato, K., Hashizume, H., Sassa, Y., Takeuchi, H.,... &, Fukuda, H., (2013). Topological organization of functional brain networks in healthy children: differences in relation to age, sex, and intelligence. PLoS One, 8, e55347.
173. Yan, C.-G., Cheung, B., Kelly, C., Colcombe, S., Craddock, R.C., Di Martino, A.,... &, Milham, M.P., (2013). A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. NeuroImage, 76, 183-201.
174. Yan, C., Gong, G., Wang, J., Wang, D., Liu, D., Zhu, C.,... &, He, Y., (2011). Sex-and brain size-related small-world structural cortical networks in young adults: A DTI tractography study. Cerebral Cortex, 21, 449-458.
175. Yap, P.-T., Fan, Y., Chen, Y., Gilmore, J.H., Lin, W., &, Shen, D., (2011). Development trends of white matter connectivity in the first years of life. PLoS One, 6, e24678.
176. Zhou, J., Gennatas, E.D., Kramer, J.H., Miller, B.L., &, Seeley, W.W., (2012). Predicting regional neurodegeneration from the healthy brain functional connectome. Neuron, 73, 1216-1227.
177. Zhou, S., &, Mondragõn, R.J., (2004). The rich-club phenomenon in the internet topology. IEEE Communications Letters, 8, 180-182.
178. Zhou, Y., Yu, F., &, Duong, T., (2014). Multiparametric MRI characterization and prediction in autism spectrum disorder using graph theory and machine learning. PLoS One, 9, e90405.
179. Zielinski, B.A., Gennatas, E.D., Zhou, J., &, Seeley, W.W., (2010). Network-level structural covariance in the developing brain. Proceedings of the National Academy of Sciences of the United States of America, 107, 18191-18196.