-
1
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
Kerscher, O., Felberbaum, R. & Hochstrasser, M. Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu. Rev. Cell Dev. Biol. 22, 159-180 (2006).
-
(2006)
Annu. Rev. Cell Dev. Biol.
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
2
-
-
9644268864
-
Mechanism and function of deusbiquitinating enzymes
-
Amerik, A. Y. & Hochstrasser, M. Mechanism and function of deusbiquitinating enzymes. Biochim. Biophys. Acta 1695, 189-207 (2004).
-
(2004)
Biochim. Biophys. Acta
, vol.1695
, pp. 189-207
-
-
Amerik, A.Y.1
Hochstrasser, M.2
-
3
-
-
63549136610
-
Sumoylation and human disease pathogenesis
-
Sarge, K. D. & Park-Sarge, O. K. Sumoylation and human disease pathogenesis. Trends Biochem. Sci. 34, 200-205 (2009).
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 200-205
-
-
Sarge, K.D.1
Park-Sarge, O.K.2
-
4
-
-
63549129144
-
SUMOylation and De-SUMOylation: Wrestling with life's processes
-
Yeh, E. T. SUMOylation and De-SUMOylation: wrestling with life's processes. J. Biol. Chem. 284, 8223-8227 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 8223-8227
-
-
Yeh, E.T.1
-
5
-
-
15944406765
-
SUMO: A history of modification
-
Hay, R. T. SUMO: a history of modification. Mol. Cell 18, 1-12 (2005).
-
(2005)
Mol. Cell
, vol.18
, pp. 1-12
-
-
Hay, R.T.1
-
6
-
-
84867027501
-
Ubiquitin-specific protease-like 1 (USPL1) is a SUMO isopeptidase with essential, non-catalytic functions
-
Schulz, S. et al. Ubiquitin-specific protease-like 1 (USPL1) is a SUMO isopeptidase with essential, non-catalytic functions. EMBO Rep. 13, 930-938 (2012).
-
(2012)
EMBO Rep. 13, 930-938
-
-
Schulz, S.1
-
7
-
-
0034595239
-
Ubiquitin-like proteins: New wines in new bottles
-
Yeh, E. T., Gong, L. & Kamitani, T. Ubiquitin-like proteins: new wines in new bottles. Gene 248, 1-14 (2000).
-
(2000)
Gene
, vol.248
, pp. 1-14
-
-
Yeh, E.T.1
Gong, L.2
Kamitani, T.3
-
8
-
-
0031011721
-
Crystal structure of a deubiquitinating enzyme (human UCH-L3) at 1 8 A resolution
-
Johnston, S. C., Larsen, C. N., Cook, W. J., Wilkinson, K. D. & Hill, C. P. Crystal structure of a deubiquitinating enzyme (human UCH-L3) at 1.8 A resolution. EMBO J. 16, 3787-3796 (1997).
-
(1997)
EMBO J.
, vol.16
, pp. 3787-3796
-
-
Johnston, S.C.1
Larsen, C.N.2
Cook, W.J.3
Wilkinson, K.D.4
Hill, C.P.5
-
9
-
-
38049177658
-
The deubiquitinating enzyme UCH-L3 regulates the apical membrane recycling of the epithelial sodium channel
-
Butterworth, M. B. et al. The deubiquitinating enzyme UCH-L3 regulates the apical membrane recycling of the epithelial sodium channel. J. Biol. Chem. 282, 37885-37893 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 37885-37893
-
-
Butterworth, M.B.1
-
10
-
-
4143083663
-
A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex
-
Reverter, D. & Lima, C. D. A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex. Structure 12, 1519-1531 (2004).
-
(2004)
Structure
, vol.12
, pp. 1519-1531
-
-
Reverter, D.1
Lima, C.D.2
-
11
-
-
33845370047
-
Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates
-
Reverter, D. & Lima, C. D. Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates. Nat. Struct. Mol. Biol. 13, 1060-1068 (2006).
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 1060-1068
-
-
Reverter, D.1
Lima, C.D.2
-
12
-
-
33845372240
-
SUMO protease SENP1 induces isomerization of the scissile peptide bond
-
Shen, L. et al. SUMO protease SENP1 induces isomerization of the scissile peptide bond. Nat. Struct. Mol. Biol. 13, 1069-1077 (2006).
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 1069-1077
-
-
Shen, L.1
-
13
-
-
33746038148
-
The structure of SENP1-SUMO-2 complex suggests a structural basis for discrimination between SUMO paralogues during processing
-
Shen, L. N., Dong, C., Liu, H., Naismith, J. H. & Hay, R. T. The structure of SENP1-SUMO-2 complex suggests a structural basis for discrimination between SUMO paralogues during processing. Biochem. J. 397, 279-288 (2006).
-
(2006)
Biochem. J.
, vol.397
, pp. 279-288
-
-
Shen, L.N.1
Dong, C.2
Liu, H.3
Naismith, J.H.4
Hay, R.T.5
-
14
-
-
33748754202
-
Crystal structure of the SENP1 mutant C603S-SUMO complex reveals the hydrolytic mechanism of SUMO-specific protease
-
Xu, Z. et al. Crystal structure of the SENP1 mutant C603S-SUMO complex reveals the hydrolytic mechanism of SUMO-specific protease. Biochem. J. 398, 345-352 (2006).
-
(2006)
Biochem. J.
, vol.398
, pp. 345-352
-
-
Xu, Z.1
-
15
-
-
57649138450
-
Structure of the human SENP7 catalytic domain and poly-SUMO deconjugation activities for SENP6 and SENP7
-
Lima, C. D. & Reverter, D. Structure of the human SENP7 catalytic domain and poly-SUMO deconjugation activities for SENP6 and SENP7. J. Biol. Chem. 283, 32045-32055 (2008).
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 32045-32055
-
-
Lima, C.D.1
Reverter, D.2
-
16
-
-
0037184947
-
Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
-
Hu, M. et al. Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell 111, 1041-1054 (2002).
-
(2002)
Cell
, vol.111
, pp. 1041-1054
-
-
Hu, M.1
-
17
-
-
27744516748
-
Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14
-
Hu, M. et al. Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14. EMBO J. 24, 3747-3756 (2005).
-
(2005)
EMBO J.
, vol.24
, pp. 3747-3756
-
-
Hu, M.1
-
18
-
-
35548935098
-
SUMO-specific protease 1 is essential for stabilization of HIF1alpha during hypoxia
-
Cheng, J., Kang, X., Zhang, S. & Yeh, E. T. SUMO-specific protease 1 is essential for stabilization of HIF1alpha during hypoxia. Cell 131, 584-595 (2007).
-
(2007)
Cell
, vol.131
, pp. 584-595
-
-
Cheng, J.1
Kang, X.2
Zhang, S.3
Yeh, E.T.4
-
19
-
-
78449239616
-
Induction of SENP1 in endothelial cells contributes to hypoxiadriven VEGF expression and angiogenesis
-
Xu, Y. et al. Induction of SENP1 in endothelial cells contributes to hypoxiadriven VEGF expression and angiogenesis. J. Biol. Chem. 285, 36682-36688 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 36682-36688
-
-
Xu, Y.1
-
20
-
-
33748525164
-
Role of desumoylation in the development of prostate cancer
-
Cheng, J., Bawa, T., Lee, P., Gong, L. & Yeh, E. T. Role of desumoylation in the development of prostate cancer. Neoplasia 8, 667-676 (2006).
-
(2006)
Neoplasia
, vol.8
, pp. 667-676
-
-
Cheng, J.1
Bawa, T.2
Lee, P.3
Gong, L.4
Yeh, E.T.5
-
21
-
-
77955505569
-
SENP1 induces prostatic intraepithelial neoplasia through multiple mechanisms
-
Bawa-Khalfe, T., Cheng, J., Lin, S. H., Ittmann, M. M. & Yeh, E. T. SENP1 induces prostatic intraepithelial neoplasia through multiple mechanisms. J. Biol. Chem. 285, 25859-25866 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 25859-25866
-
-
Bawa-Khalfe, T.1
Cheng, J.2
Lin, S.H.3
Ittmann, M.M.4
Yeh, E.T.5
-
22
-
-
61449247171
-
SUMO-specific protease 1 (SENP1) reverses the hormoneaugmented SUMOylation of androgen receptor and modulates gene responses in prostate cancer cells
-
Kaikkonen, S. et al. SUMO-specific protease 1 (SENP1) reverses the hormoneaugmented SUMOylation of androgen receptor and modulates gene responses in prostate cancer cells. Mol. Endocrinol. 23, 292-307 (2009).
-
(2009)
Mol. Endocrinol
, vol.23
, pp. 292-307
-
-
Kaikkonen, S.1
-
23
-
-
53849126497
-
Strategies for the identification of novel inhibitors of deubiquitinating enzymes
-
Goldenberg, S. J., McDermott, J. L., Butt, T. R., Mattern, M. R. & Nicholson, B. Strategies for the identification of novel inhibitors of deubiquitinating enzymes. Biochem. Soc. Trans. 36, 828-832 (2008).
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 828-832
-
-
Goldenberg, S.J.1
McDermott, J.L.2
Butt, T.R.3
Mattern, M.R.4
Nicholson, B.5
-
24
-
-
84877621274
-
SUMO-specific protease 1 promotes prostate cancer progression and metastasis
-
Wang, Q. et al. SUMO-specific protease 1 promotes prostate cancer progression and metastasis. Oncogene 32, 2493-2498 (2012).
-
(2012)
Oncogene
, vol.32
, pp. 2493-2498
-
-
Wang, Q.1
-
25
-
-
79959839402
-
SUMO-specific protease 1 regulates the in vitro and in vivo growth of colon cancer cells with the upregulated expression of CDK inhibitors
-
Xu, Y. et al. SUMO-specific protease 1 regulates the in vitro and in vivo growth of colon cancer cells with the upregulated expression of CDK inhibitors. Cancer Lett. 309, 78-84 (2011).
-
(2011)
Cancer Lett.
, vol.309
, pp. 78-84
-
-
Xu, Y.1
-
26
-
-
79959504580
-
Development of small molecule inhibitors and probes of human SUMO deconjugating proteases
-
Albrow, V. E. et al. Development of small molecule inhibitors and probes of human SUMO deconjugating proteases. Chem. Biol. 18, 722-732 (2011).
-
(2011)
Chem. Biol.
, vol.18
, pp. 722-732
-
-
Albrow, V.E.1
-
27
-
-
70450184385
-
Selective characterization of microsecond motions in proteins by NMR relaxation
-
Hansen, D. F., Feng, H., Zhou, Z., Bai, Y. & Kay, L. E. Selective characterization of microsecond motions in proteins by NMR relaxation. J. Am. Chem. Soc. 131, 16257-16265 (2009).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16257-16265
-
-
Hansen, D.F.1
Feng, H.2
Zhou, Z.3
Bai, Y.4
Kay, L.E.5
-
28
-
-
79957767719
-
Determining valine side-chain rotamer conformations in proteins from methyl (13)c chemical shifts: Application to the 360 kda half-proteasome
-
Hansen, D. F. & Kay, L. E. Determining valine side-chain rotamer conformations in proteins from methyl (13)c chemical shifts: application to the 360 kda half-proteasome. J. Am. Chem. Soc. 133, 8272-8281 (2011).
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 8272-8281
-
-
Hansen, D.F.1
Kay, L.E.2
-
29
-
-
39749145723
-
Accurately probing slow motions on millisecond timescales with a robust NMR relaxation experiment
-
Long, D., Liu, M. L. & Yang, D. W. Accurately probing slow motions on millisecond timescales with a robust NMR relaxation experiment. J. Am. Chem. Soc. 130, 2432-2433 (2008).
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2432-2433
-
-
Long, D.1
Liu, M.L.2
Yang, D.W.3
-
30
-
-
34248530027
-
A single-quantum methyl C-13-relaxation dispersion experiment with improved sensitivity
-
Lundstrom, P., Vallurupalli, P., Religa, T. L., Dahlquist, F. W. & Kay, L. E. A single-quantum methyl C-13-relaxation dispersion experiment with improved sensitivity. J. Biomol. NMR 38, 79-88 (2007).
-
(2007)
J. Biomol. NMR
, vol.38
, pp. 79-88
-
-
Lundstrom, P.1
Vallurupalli, P.2
Religa, T.L.3
Dahlquist, F.W.4
Kay, L.E.5
-
31
-
-
80051673221
-
SHIFTX2: Significantly improved protein chemical shift prediction
-
Han, B., Liu, Y., Ginzinger, S. W. & Wishart, D. S. SHIFTX2: significantly improved protein chemical shift prediction. J. Biomol. NMR 50, 43-57 (2011).
-
(2011)
J. Biomol. NMR
, vol.50
, pp. 43-57
-
-
Han, B.1
Liu, Y.2
Ginzinger, S.W.3
Wishart, D.S.4
-
32
-
-
33645238421
-
Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1
-
Das, C. et al. Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1. Proc. Natl Acad. Sci. USA 103, 4675-4680 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4675-4680
-
-
Das, C.1
-
33
-
-
84884549753
-
Exploring the desumoylation process of SENP1: A study combined MD simulations with QM/MM calculations on SENP1-SUMO1-RanGAP1
-
Shi, T. et al. Exploring the desumoylation process of SENP1: a study combined MD simulations with QM/MM calculations on SENP1-SUMO1-RanGAP1. J. Chem. Inf. Model. 53, 2360-2368 (2013).
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 2360-2368
-
-
Shi, T.1
-
34
-
-
84880516465
-
Identification and characterization of a new chemotype of noncovalent SENP inhibitors
-
Madu, I. G. et al. Identification and characterization of a new chemotype of noncovalent SENP inhibitors. ACS Chem. Biol. 8, 1435-1441 (2013).
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 1435-1441
-
-
Madu, I.G.1
-
35
-
-
34548848530
-
Small ubiquitin-related modifier (SUMO)-specific proteases: Profiling the specificities and activities of human SENPs
-
Mikolajczyk, J. et al. Small ubiquitin-related modifier (SUMO)-specific proteases: profiling the specificities and activities of human SENPs. J. Biol. Chem. 282, 26217-26224 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 26217-26224
-
-
Mikolajczyk, J.1
-
36
-
-
38749124386
-
Activity profiling of human deSUMOylating enzymes (SENPs) with synthetic substrates suggests an unexpected specificity of two newly characterized members of the family
-
Drag, M., Mikolajczyk, J., Krishnakumar, I. M., Huang, Z. & Salvesen, G. S. Activity profiling of human deSUMOylating enzymes (SENPs) with synthetic substrates suggests an unexpected specificity of two newly characterized members of the family. Biochem. J. 409, 461-469 (2008).
-
(2008)
Biochem. J.
, vol.409
, pp. 461-469
-
-
Drag, M.1
Mikolajczyk, J.2
Krishnakumar, I.M.3
Huang, Z.4
Salvesen, G.S.5
-
37
-
-
58149159450
-
Positional-scanning fluorigenic substrate libraries reveal unexpected specificity determinants of DUBs (deubiquitinating enzymes)
-
Drag, M. et al. Positional-scanning fluorigenic substrate libraries reveal unexpected specificity determinants of DUBs (deubiquitinating enzymes). Biochem. J. 415, 367-375 (2008).
-
(2008)
Biochem. J.
, vol.415
, pp. 367-375
-
-
Drag, M.1
-
38
-
-
0030266118
-
Stereospecific assignments of Val and Leu methyl groups in a selectively 13C-labeled 18 kDa polypeptide using 3D CT-(H) CCHCOSY and 2d 1Jc-c edited heteronuclear correlation experiments
-
Hu, W. & Zuiderweg, E. R. Stereospecific assignments of Val and Leu methyl groups in a selectively 13C-labeled 18 kDa polypeptide using 3D CT-(H) CCHCOSY and 2d 1Jc-c edited heteronuclear correlation experiments. J. Magn. Reson. B 113, 70-75 (1996).
-
(1996)
J. Magn. Reson. B
, vol.113
, pp. 70-75
-
-
Hu, W.1
Zuiderweg, E.R.2
-
39
-
-
0024435833
-
Stereospecific nuclear magnetic-resonance assignments of the methyl-groups of valine and leucine in the DNA-binding domain of the 434-repressor by biosynthetically directed fractional C-13 labeling
-
Neri, D., Szyperski, T., Otting, G., Senn, H. & Wuthrich, K. Stereospecific nuclear magnetic-resonance assignments of the methyl-groups of valine and leucine in the DNA-binding domain of the 434-repressor by biosynthetically directed fractional C-13 labeling. Biochemistry 28, 7510-7516 (1989).
-
(1989)
Biochemistry
, vol.28
, pp. 7510-7516
-
-
Neri, D.1
Szyperski, T.2
Otting, G.3
Senn, H.4
Wuthrich, K.5
-
40
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F. et al. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293 (1995).
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
-
42
-
-
0034170879
-
Protein dynamics measurements by TROSY-based NMR experiments
-
Zhu, G., Xia, Y., Nicholson, L. K. & Sze, K. H. Protein dynamics measurements by TROSY-based NMR experiments. J. Magn. Reson. 143, 423-426 (2000).
-
(2000)
J. Magn. Reson.
, vol.143
, pp. 423-426
-
-
Zhu, G.1
Xia, Y.2
Nicholson, L.K.3
Sze, K.H.4
-
43
-
-
84856520247
-
GUARDD: User-friendly MATLAB software for rigorous analysis of CPMG RD NMR data
-
Kleckner, I. R. & Foster, M. P. GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data. J. Biomol. NMR 52, 11-22 (2012).
-
(2012)
J. Biomol. NMR
, vol.52
, pp. 11-22
-
-
Kleckner, I.R.1
Foster, M.P.2
|