-
1
-
-
9644268864
-
Mechanism and function of deubiquitinating enzymes
-
Amerik AY, Hochstrasser M (2004) Mechanism and function of deubiquitinating enzymes. Biochim Biophys Acta 1695: 189-207
-
(2004)
Biochim Biophys Acta
, vol.1695
, pp. 189-207
-
-
Amerik, A.Y.1
Hochstrasser, M.2
-
2
-
-
0035903538
-
A novel active site-directed probe specific for deubiquitylating enzymes reveals proteasome association of USP14
-
Borodovsky A, Kessler BM, Casagrande R, Overkleeft HS, Wilkinson KD, Ploegh HL (2001) A novel active site-directed probe specific for deubiquitylating enzymes reveals proteasome association of USP14. EMBO J 20: 5187-5196
-
(2001)
EMBO J
, vol.20
, pp. 5187-5196
-
-
Borodovsky, A.1
Kessler, B.M.2
Casagrande, R.3
Overkleeft, H.S.4
Wilkinson, K.D.5
Ploegh, H.L.6
-
3
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, Delano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS (1998) Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D 54: 905-921
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
4
-
-
0347993105
-
Pleiotropic effects of Ubp6 loss on drug sensitivities and yeast prion are due to depletion of the free ubiquitin pool
-
Chernova TA, Allen KD, Wesoloski LM, Shanks JR, Chernoff YO, Wilkinson KD (2003) Pleiotropic effects of Ubp6 loss on drug sensitivities and yeast prion are due to depletion of the free ubiquitin pool. J Biol Chem 278: 52102-52115
-
(2003)
J Biol Chem
, vol.278
, pp. 52102-52115
-
-
Chernova, T.A.1
Allen, K.D.2
Wesoloski, L.M.3
Shanks, J.R.4
Chernoff, Y.O.5
Wilkinson, K.D.6
-
5
-
-
2942618660
-
The role of the ubiquitin-proteasomal pathway in Parkinson's disease and other neurodegenerative disorders
-
Chung KK, Dawson VL, Dawson TM (2001) The role of the ubiquitin-proteasomal pathway in Parkinson's disease and other neurodegenerative disorders. Trends Neurosci 24: S7-S14
-
(2001)
Trends Neurosci
, vol.24
-
-
Chung, K.K.1
Dawson, V.L.2
Dawson, T.M.3
-
6
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, N
-
Collaborative Computational Project, N (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D50: 760-763
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 760-763
-
-
-
7
-
-
0031760462
-
Deubiquitinating enzymes: A new class of biological regulators
-
D'Andrea A, Pellman D (1998) Deubiquitinating enzymes: a new class of biological regulators. Crit Rev Biochem Mol Biol 33: 337-352
-
(1998)
Crit Rev Biochem Mol Biol
, vol.33
, pp. 337-352
-
-
D'Andrea, A.1
Pellman, D.2
-
8
-
-
0036083396
-
The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
-
Glickman MH, Ciechanover A (2002) The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction. Physiol Rev 82: 373-428
-
(2002)
Physiol Rev
, vol.82
, pp. 373-428
-
-
Glickman, M.H.1
Ciechanover, A.2
-
9
-
-
0347087494
-
Complementary roles for Rpn11 and Ubp6 in deubiquitination and proteolysis by the proteasome
-
Guterman A, Glickman MH (2004a) Complementary roles for Rpn11 and Ubp6 in deubiquitination and proteolysis by the proteasome. J Biol Chem 279: 1729-1738
-
(2004)
J Biol Chem
, vol.279
, pp. 1729-1738
-
-
Guterman, A.1
Glickman, M.H.2
-
10
-
-
2442551473
-
Deubiquitinating enzymes are IN/(trinsic to proteasome function)
-
Guterman A, Glickman MH (2004b) Deubiquitinating enzymes are IN/(trinsic to proteasome function). Curr Protein Pept Sci 5: 201-211
-
(2004)
Curr Protein Pept Sci
, vol.5
, pp. 201-211
-
-
Guterman, A.1
Glickman, M.H.2
-
11
-
-
0344629427
-
Ubiquitin depletion as a key mediator of toxicity by translational inhibitors
-
Hanna J, Leggett DS, Finley D (2003) Ubiquitin depletion as a key mediator of toxicity by translational inhibitors. Mol Cell Biol 23: 9251-9261
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9251-9261
-
-
Hanna, J.1
Leggett, D.S.2
Finley, D.3
-
13
-
-
0000783145
-
Ubiquitin-aldehyde: A general inhibitor of ubiquitin-recycling processes
-
Hershko A, Rose IA (1987) Ubiquitin-aldehyde: a general inhibitor of ubiquitin-recycling processes. Proc Natl Acad Sci USA 84: 1829-1833
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 1829-1833
-
-
Hershko, A.1
Rose, I.A.2
-
14
-
-
0037184947
-
Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
-
Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y (2002) Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell 111: 1041-1054
-
(2002)
Cell
, vol.111
, pp. 1041-1054
-
-
Hu, M.1
Li, P.2
Li, M.3
Li, W.4
Yao, T.5
Wu, J.W.6
Gu, W.7
Cohen, R.E.8
Shi, Y.9
-
15
-
-
0033565867
-
Structural basis for the specificity of ubiquitin C-terminal hydrolases
-
Johnston SC, Riddle SM, Cohen RE, Hill CP (1999) Structural basis for the specificity of ubiquitin C-terminal hydrolases. EMBO J 18: 3877-3887
-
(1999)
EMBO J
, vol.18
, pp. 3877-3887
-
-
Johnston, S.C.1
Riddle, S.M.2
Cohen, R.E.3
Hill, C.P.4
-
16
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A47: 110-119
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
17
-
-
0042320492
-
Deubiquitinating enzymes as cellular regulators
-
Kim JH, Park KC, Chung SS, Bang O, Chung CH (2003) Deubiquitinating enzymes as cellular regulators. J Biochem (Tokyo) 134: 9-18
-
(2003)
J Biochem (Tokyo)
, vol.134
, pp. 9-18
-
-
Kim, J.H.1
Park, K.C.2
Chung, S.S.3
Bang, O.4
Chung, C.H.5
-
18
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) Molscript: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24: 945-950
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 945-950
-
-
Kraulis, P.J.1
-
19
-
-
13944258080
-
The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon
-
Krishna SS, Grishin NV (2004) The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon. Cell Cycle 3: 1046-1049
-
(2004)
Cell Cycle
, vol.3
, pp. 1046-1049
-
-
Krishna, S.S.1
Grishin, N.V.2
-
20
-
-
0031038169
-
Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome
-
Lam YA, Xu W, DeMartino GN, Cohen RE (1997) Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome. Nature 385: 737-740
-
(1997)
Nature
, vol.385
, pp. 737-740
-
-
Lam, Y.A.1
Xu, W.2
DeMartino, G.N.3
Cohen, R.E.4
-
21
-
-
0036753063
-
Multiple associated proteins regulate proteasome structure and function
-
Leggett DS, Hanna J, Borodovsky A, Crosas B, Schmidt M, Baker RT, Walz T, Ploegh H, Finley D (2002) Multiple associated proteins regulate proteasome structure and function. Mol Cell 10: 495-507
-
(2002)
Mol Cell
, vol.10
, pp. 495-507
-
-
Leggett, D.S.1
Hanna, J.2
Borodovsky, A.3
Crosas, B.4
Schmidt, M.5
Baker, R.T.6
Walz, T.7
Ploegh, H.8
Finley, D.9
-
22
-
-
12544253837
-
Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate
-
Misaghi S, Galardy PJ, Meester WJ, Ovaa H, Ploegh HL, Gaudet R (2005) Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate. J Biol Chem 280: 1512-1520
-
(2005)
J Biol Chem
, vol.280
, pp. 1512-1520
-
-
Misaghi, S.1
Galardy, P.J.2
Meester, W.J.3
Ovaa, H.4
Ploegh, H.L.5
Gaudet, R.6
-
23
-
-
84920325457
-
AMoRe and automated package for molecular replacement
-
Navaza J (1994) AMoRe and automated package for molecular replacement. Acta Crystallogr A50: 157-163
-
(1994)
Acta Crystallogr
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
24
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struct Funct Genet 11: 281-296
-
(1991)
Proteins Struct Funct Genet
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
25
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
26
-
-
0032912818
-
Interaction of the Doa4 deubiquitinating enzyme with the yeast 26S proteasome
-
Papa FR, Amerik AY, Hochstrasser M (1999) Interaction of the Doa4 deubiquitinating enzyme with the yeast 26S proteasome. Mol Biol Cell 10: 741-756
-
(1999)
Mol Biol Cell
, vol.10
, pp. 741-756
-
-
Papa, F.R.1
Amerik, A.Y.2
Hochstrasser, M.3
-
27
-
-
0027427249
-
The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene
-
Papa FR, Hochstrasser M (1993) The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene. Nature 366: 313-319
-
(1993)
Nature
, vol.366
, pp. 313-319
-
-
Papa, F.R.1
Hochstrasser, M.2
-
28
-
-
0842303313
-
Back to the future with ubiquitin
-
Pickart CM (2004) Back to the future with ubiquitin. Cell 116: 181-190
-
(2004)
Cell
, vol.116
, pp. 181-190
-
-
Pickart, C.M.1
-
29
-
-
1542344435
-
Proteasomes and their kin: Proteases in the machine age
-
Pickart CM, Cohen RE (2004) Proteasomes and their kin: proteases in the machine age. Nat Rev Mol Cell Biol 5: 177-187
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 177-187
-
-
Pickart, C.M.1
Cohen, R.E.2
-
30
-
-
0021929906
-
Ubiquitin carboxyl-terminal hydrolase acts on ubiquitin carboxyl-terminal amides
-
Pickart CM, Rose IA (1985) Ubiquitin carboxyl-terminal hydrolase acts on ubiquitin carboxyl-terminal amides. J Biol Chem 260: 7903-7910
-
(1985)
J Biol Chem
, vol.260
, pp. 7903-7910
-
-
Pickart, C.M.1
Rose, I.A.2
-
31
-
-
0033016291
-
The ubiquitin-proteasome pathway and pathogenesis of human diseases
-
Schwartz AL, Ciechanover A (1999) The ubiquitin-proteasome pathway and pathogenesis of human diseases. Annu Rev Med 50: 57-74
-
(1999)
Annu Rev Med
, vol.50
, pp. 57-74
-
-
Schwartz, A.L.1
Ciechanover, A.2
-
32
-
-
0030499814
-
Correlated phasing of multiple isomorphous replacement data
-
Terwilliger TC, Berendzen J (1996) Correlated phasing of multiple isomorphous replacement data. Acta Crystallogr D 52: 749-757
-
(1996)
Acta Crystallogr D
, vol.52
, pp. 749-757
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
34
-
-
0037131243
-
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome
-
Verma R, Aravind L, Oania R, McDonald WH, Yates III JR, Koonin EV, Deshaies RJ (2002) Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 298: 611-615
-
(2002)
Science
, vol.298
, pp. 611-615
-
-
Verma, R.1
Aravind, L.2
Oania, R.3
McDonald, W.H.4
Yates III, J.R.5
Koonin, E.V.6
Deshaies, R.J.7
-
35
-
-
0033791447
-
Proteasomal proteomics: Identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes
-
Verma R, Chen S, Feldman R, Schieltz D, Yates J, Dohmen J, Deshaies RJ (2000) Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes. Mol Biol Cell 11: 3425-3439
-
(2000)
Mol Biol Cell
, vol.11
, pp. 3425-3439
-
-
Verma, R.1
Chen, S.2
Feldman, R.3
Schieltz, D.4
Yates, J.5
Dohmen, J.6
Deshaies, R.J.7
-
36
-
-
0034685806
-
Analysis of a gene encoding Rpn10 of the fission yeast proteasome reveals that the polyubiquitin-binding site of this subunit is essential when Rpn12/Mts3 activity is compromised
-
Wilkinson CR, Ferrell K, Penney M, Wallace M, Dubiel W, Gordon C (2000) Analysis of a gene encoding Rpn10 of the fission yeast proteasome reveals that the polyubiquitin-binding site of this subunit is essential when Rpn12/Mts3 activity is compromised. J Biol Chem 275: 15182-15192
-
(2000)
J Biol Chem
, vol.275
, pp. 15182-15192
-
-
Wilkinson, C.R.1
Ferrell, K.2
Penney, M.3
Wallace, M.4
Dubiel, W.5
Gordon, C.6
-
37
-
-
0036842130
-
Synaptic defects in ataxia mice result from a mutation in Usp14, encoding a ubiquitin-specific protease
-
Wilson SM, Bhattacharyya B, Rachel RA, Coppola V Tessarollo L, Householder DB, Fletcher CF, Miller RJ, Copeland NG, Jenkins NA (2002) Synaptic defects in ataxia mice result from a mutation in Usp14, encoding a ubiquitin-specific protease. Nat Genet 32: 420-425
-
(2002)
Nat Genet
, vol.32
, pp. 420-425
-
-
Wilson, S.M.1
Bhattacharyya, B.2
Rachel, R.A.3
Coppola, V.4
Tessarollo, L.5
Householder, D.B.6
Fletcher, C.F.7
Miller, R.J.8
Copeland, N.G.9
Jenkins, N.A.10
-
38
-
-
0037401872
-
Deubiquitinating enzymes - The importance of driving in reverse along the ubiquitin-proteasome pathway
-
Wing SS (2003) Deubiquitinating enzymes - the importance of driving in reverse along the ubiquitin-proteasome pathway. Int J Biochem Cell Biol 35: 590-605
-
(2003)
Int J Biochem Cell Biol
, vol.35
, pp. 590-605
-
-
Wing, S.S.1
-
39
-
-
0033032409
-
The Ubp6 family of deubiquitinating enzymes contains a ubiquitin-like domain: SUb
-
Wyndham AM, Baker RT, Chelvanayagam G (1999) The Ubp6 family of deubiquitinating enzymes contains a ubiquitin-like domain: SUb. Protein Sci 8: 1268-1275
-
(1999)
Protein Sci
, vol.8
, pp. 1268-1275
-
-
Wyndham, A.M.1
Baker, R.T.2
Chelvanayagam, G.3
-
40
-
-
0034646298
-
Physical association of ubiquitin ligases and the 26S proteasome
-
Xie Y, Varshavsky A (2000) Physical association of ubiquitin ligases and the 26S proteasome. Proc Natl Acad Sci USA 97: 2497-2502
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 2497-2502
-
-
Xie, Y.1
Varshavsky, A.2
-
41
-
-
0037179694
-
A cryptic protease couples deubiquitination and degradation by the proteasome
-
Yao T, Cohen RE (2002) A cryptic protease couples deubiquitination and degradation by the proteasome. Nature 419: 403-407
-
(2002)
Nature
, vol.419
, pp. 403-407
-
-
Yao, T.1
Cohen, R.E.2
-
42
-
-
0033615348
-
The proteasome: A macromolecular assembly designed for controlled proteolysis
-
Zwickl P, Voges D, Baumeister W (1999) The proteasome: a macromolecular assembly designed for controlled proteolysis. Philos Trans R Soc London B 354: 1501-1511
-
(1999)
Philos Trans R Soc London B
, vol.354
, pp. 1501-1511
-
-
Zwickl, P.1
Voges, D.2
Baumeister, W.3
|