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Volumn 35, Issue 2, 2015, Pages

Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga

Author keywords

Allele discovery; Chromosome segment substitution lines (CSSLs); Crop wild relatives; Genotyping by sequencing (GBS); Marker assisted selection (MAS); Oryza sativa; Rice

Indexed keywords

AGRONOMY; GENETIC ENGINEERING; PLANTS (BOTANY);

EID: 84922797661     PISSN: 13803743     EISSN: 15729788     Source Type: Journal    
DOI: 10.1007/s11032-015-0276-7     Document Type: Article
Times cited : (79)

References (94)
  • 1
    • 85183826453 scopus 로고    scopus 로고
    • Upland rice for highlands: new varieties and sustainable cropping systems for food security promising prospects for the global challenges of rice production. In: Proceedings of the FAO rice conference: rice is life. International Rice Commission Newsletter
    • Ahmadi N, Dzido JL, Vales M, Rakotoarisoa J, Chabanne A (2004) Upland rice for highlands: new varieties and sustainable cropping systems for food security promising prospects for the global challenges of rice production. In: Proceedings of the FAO rice conference: rice is life. International Rice Commission Newsletter. pp 58–65
    • (2004) Pp 58–65
    • Ahmadi, N.1    Dzido, J.L.2    Vales, M.3    Rakotoarisoa, J.4    Chabanne, A.5
  • 2
    • 84856614330 scopus 로고    scopus 로고
    • Chromosome segment substitution lines: a powerful tool for the introgression of valuable genes from Oryza wild species into cultivated rice (O. sativa)
    • Ali ML, Sanchez PL, Yu S, Lorieux M, Eizenga GC (2010) Chromosome segment substitution lines: a powerful tool for the introgression of valuable genes from Oryza wild species into cultivated rice (O. sativa). Rice 3:218–234. doi:10.1007/s12284-010-9058-3
    • (2010) Rice , vol.3 , pp. 218-234
    • Ali, M.L.1    Sanchez, P.L.2    Yu, S.3    Lorieux, M.4    Eizenga, G.C.5
  • 3
    • 43349102841 scopus 로고    scopus 로고
    • Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice
    • PID: 18274726
    • Ando T, Yamamoto T, Shimizu T, Ma XF, Shomura A, Takeuchi Y, Lin SY, Yano M (2008) Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice. Theor Appl Genet 116:881–890. doi:10.1007/s00122-008-0722-6
    • (2008) Theor Appl Genet , vol.116 , pp. 881-890
    • Ando, T.1    Yamamoto, T.2    Shimizu, T.3    Ma, X.F.4    Shomura, A.5    Takeuchi, Y.6    Lin, S.Y.7    Yano, M.8
  • 5
    • 0036670609 scopus 로고    scopus 로고
    • Present and future of quantitative trait locus analysis in plant breeding
    • Asíns MJ (2002) Present and future of quantitative trait locus analysis in plant breeding. Plant Breeding 121:281–291. doi:10.1046/j.1439-0523.2002.730285.x
    • (2002) Plant Breeding , vol.121 , pp. 281-291
    • Asíns, M.J.1
  • 7
    • 35748946021 scopus 로고    scopus 로고
    • TASSEL: software for association mapping of complex traits in diverse samples
    • COI: 1:CAS:528:DC%2BD2sXht1ejtr7F, PID: 17586829
    • Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES (2007) TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23:2633–2635. doi:10.1093/bioinformatics/btm308
    • (2007) Bioinformatics , vol.23 , pp. 2633-2635
    • Bradbury, P.J.1    Zhang, Z.2    Kroon, D.E.3    Casstevens, T.M.4    Ramdoss, Y.5    Buckler, E.S.6
  • 8
    • 0031239602 scopus 로고    scopus 로고
    • Alien introgression in rice
    • COI: 1:CAS:528:DyaK2sXlvVCrsLY%3D, PID: 9291958
    • Brar DS, Khush GS (1997) Alien introgression in rice. Plant Mol Biol 35:35–47
    • (1997) Plant Mol Biol , vol.35 , pp. 35-47
    • Brar, D.S.1    Khush, G.S.2
  • 9
    • 0034896084 scopus 로고    scopus 로고
    • Development and mapping of Oryza glumaepatula-derived microsatellite markers in the interspecific cross Oryza glumaepatula × O sativa
    • COI: 1:CAS:528:DC%2BD3MXmvV2rs7o%3D, PID: 11525066
    • Brondani C, Brondani R, Rangel P, Ferreira M (2001) Development and mapping of Oryza glumaepatula-derived microsatellite markers in the interspecific cross Oryza glumaepatula × O sativa. Hereditas 134:59–71
    • (2001) Hereditas , vol.134 , pp. 59-71
    • Brondani, C.1    Brondani, R.2    Rangel, P.3    Ferreira, M.4
  • 11
    • 79959923866 scopus 로고    scopus 로고
    • Developing rice with high yield under phosphorus deficiency: Pup1 sequence to application
    • COI: 1:CAS:528:DC%2BC3MXptFWksr8%3D, PID: 21602323
    • Chin JH, Gamuyao R, Dalid C, Bustamam M, Prasetiyono J, Moeljopawiro S, Wissuwa M, Heuer S (2011) Developing rice with high yield under phosphorus deficiency: Pup1 sequence to application. Plant Physiol 156:1202–1216. doi:10.1104/pp.111.175471
    • (2011) Plant Physiol , vol.156 , pp. 1202-1216
    • Chin, J.H.1    Gamuyao, R.2    Dalid, C.3    Bustamam, M.4    Prasetiyono, J.5    Moeljopawiro, S.6    Wissuwa, M.7    Heuer, S.8
  • 12
    • 40949130394 scopus 로고    scopus 로고
    • Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
    • COI: 1:CAS:528:DC%2BD1cXisFCmu7c%3D, PID: 17715053
    • Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos Trans R Soc Lond B Biol Sci 363:557–572. doi:10.1098/rstb.2007.2170
    • (2008) Philos Trans R Soc Lond B Biol Sci , vol.363 , pp. 557-572
    • Collard, B.C.Y.1    Mackill, D.J.2
  • 14
    • 0030052609 scopus 로고    scopus 로고
    • Permutation tests for multiple loci affecting a quantitative character
    • COI: 1:STN:280:DyaK28zms1Chug%3D%3D, PID: 8770605
    • Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142:285–294
    • (1996) Genetics , vol.142 , pp. 285-294
    • Doerge, R.W.1    Churchill, G.A.2
  • 16
    • 84950650672 scopus 로고
    • Pairwise multiple comparisons in the homogeneous variance, unequal sample size case
    • Dunnett CW (1980) Pairwise multiple comparisons in the homogeneous variance, unequal sample size case. J Am Stat Assoc 75:789–795. doi:10.1080/01621459.1980.10477551
    • (1980) J Am Stat Assoc , vol.75 , pp. 789-795
    • Dunnett, C.W.1
  • 18
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • COI: 1:CAS:528:DC%2BC3MXmtVKru7Y%3D, PID: 21573248
    • Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6:e19379. doi:10.1371/journal.pone.0019379
    • (2011) PLoS ONE , vol.6 , pp. 19379
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5    Buckler, E.S.6    Mitchell, S.E.7
  • 19
    • 85183828188 scopus 로고    scopus 로고
    • The international year of rice 2004: concept paper
    • Food and Agricultural Organization of the United Nations (2003) The international year of rice 2004: concept paper. pp 1–24
    • (2003) Pp 1–24
  • 20
    • 33845422047 scopus 로고    scopus 로고
    • Genetic diversity within Oryza rufipogon germplasms preserved in Chinese field gene banks of wild rice as revealed by microsatellite markers
    • Gao L-Z, Zhang C-H, Li D-Y, Pan D-J, Jia J-Z, Dong Y-S (2006) Genetic diversity within Oryza rufipogon germplasms preserved in Chinese field gene banks of wild rice as revealed by microsatellite markers. Biodivers Conserv 15:4059–4077. doi:10.1007/s10531-005-3135-8
    • (2006) Biodivers Conserv , vol.15 , pp. 4059-4077
    • Gao, L.-Z.1    Zhang, C.-H.2    Li, D.-Y.3    Pan, D.-J.4    Jia, J.-Z.5    Dong, Y.-S.6
  • 21
    • 78751634304 scopus 로고    scopus 로고
    • A genetic model for the female sterility barrier between asian and african cultivated rice species. Genetics
    • Garavito A, Guyot R, Lozano J, Gavory F, Samain S, Panaud O, Tohme J, Ghesquiere A, Lorieux M (2010) A genetic model for the female sterility barrier between asian and african cultivated rice species. Genetics. doi:10.1534/genetics.110.116772
    • (2010)
    • Garavito, A.1    Guyot, R.2    Lozano, J.3    Gavory, F.4    Samain, S.5    Panaud, O.6    Tohme, J.7    Ghesquiere, A.8    Lorieux, M.9
  • 23
    • 83455198443 scopus 로고    scopus 로고
    • Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice
    • COI: 1:CAS:528:DC%2BC38XltlGit7c%3D, PID: 21954164
    • Gu X-Y, Foley ME, Horvath DP, Anderson JV, Feng J, Zhang L, Mowry CR, Ye H, Suttle JC, Kadowaki K, Chen Z (2011) Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice. Genetics 189:1515–1524. doi:10.1534/genetics.111.131169
    • (2011) Genetics , vol.189 , pp. 1515-1524
    • Gu, X.-Y.1    Foley, M.E.2    Horvath, D.P.3    Anderson, J.V.4    Feng, J.5    Zhang, L.6    Mowry, C.R.7    Ye, H.8    Suttle, J.C.9    Kadowaki, K.10    Chen, Z.11
  • 24
    • 0345320132 scopus 로고
    • Genealogy of Brazilian upland rice varieties
    • Guimaraes EP (1993) Genealogy of Brazilian upland rice varieties. Int Rice Res Notes 18:6
    • (1993) Int Rice Res Notes , vol.18 , pp. 6
    • Guimaraes, E.P.1
  • 25
    • 3042879112 scopus 로고    scopus 로고
    • Genetic diversity of upland rice germplasm distributed in Latin America
    • Guimaraees EP, Borrero J, Ospina-Rey Y (1996) Genetic diversity of upland rice germplasm distributed in Latin America. Pesqu Agropecu Bras 31:187–194
    • (1996) Pesqu Agropecu Bras , vol.31 , pp. 187-194
    • Guimaraees, E.P.1    Borrero, J.2    Ospina-Rey, Y.3
  • 26
    • 77950485744 scopus 로고    scopus 로고
    • Identification of a rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines
    • PID: 20064202
    • Gutierrez A, Carabali J, Giraldo O, Martinez C, Correa F, Prado G, Tohme J, Lorieux M (2010) Identification of a rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines. BMC Plant Biol 10:6. doi:10.1186/1471-2229-10-6
    • (2010) BMC Plant Biol , vol.10 , pp. 6
    • Gutierrez, A.1    Carabali, J.2    Giraldo, O.3    Martinez, C.4    Correa, F.5    Prado, G.6    Tohme, J.7    Lorieux, M.8
  • 28
    • 84883530606 scopus 로고    scopus 로고
    • Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity
    • COI: 1:CAS:528:DC%2BC3sXhsVGiu7vK, PID: 24040295
    • Heslot N, Rutkoski J, Poland J, Jannink J-L, Sorrells ME (2013) Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity. PLoS ONE 8:e74612. doi:10.1371/journal.pone.0074612
    • (2013) PLoS ONE , vol.8 , pp. 74612
    • Heslot, N.1    Rutkoski, J.2    Poland, J.3    Jannink, J.-L.4    Sorrells, M.E.5
  • 30
    • 84879222387 scopus 로고    scopus 로고
    • Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice
    • COI: 1:CAS:528:DC%2BC3sXpvFertb0%3D
    • Imai I, Kimball J, Conway B, Yeater K, McCouch S, McClung A (2013) Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice. Mol Breed 32:101–120. doi:10.1007/s11032-013-9855-7
    • (2013) Mol Breed , vol.32 , pp. 101-120
    • Imai, I.1    Kimball, J.2    Conway, B.3    Yeater, K.4    McCouch, S.5    McClung, A.6
  • 31
    • 0029825693 scopus 로고    scopus 로고
    • Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population
    • COI: 1:CAS:528:DyaK28XmtF2nsb8%3D
    • Inukai T, Zeigler RS, Sarkarung S, Bronson M, Dung LV, Kinoshita T, Nelson RJ (1996) Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population. Theoret Appl Genetics 93:560–567. doi:10.1007/BF00417948
    • (1996) Theoret Appl Genetics , vol.93 , pp. 560-567
    • Inukai, T.1    Zeigler, R.S.2    Sarkarung, S.3    Bronson, M.4    Dung, L.V.5    Kinoshita, T.6    Nelson, R.J.7
  • 34
    • 0001871054 scopus 로고
    • Report of the committee on gene symbolization, nomenclature and linkage groups
    • Kinoshita T (1991) Report of the committee on gene symbolization, nomenclature and linkage groups. Rice Genet Newsl 8:2–37
    • (1991) Rice Genet Newsl , vol.8 , pp. 2-37
    • Kinoshita, T.1
  • 35
    • 0002071081 scopus 로고
    • Report of the committee on gene symbolization, nomenclature and linkage groups
    • Kinoshita T (1993) Report of the committee on gene symbolization, nomenclature and linkage groups. Rice Genet Newsl 10:7–39
    • (1993) Rice Genet Newsl , vol.10 , pp. 7-39
    • Kinoshita, T.1
  • 36
    • 48249149899 scopus 로고    scopus 로고
    • Sex-independent transmission ratio distortion system responsible for reproductive barriers between Asian and African rice species
    • COI: 1:CAS:528:DC%2BD1cXhtVKns7vF, PID: 18507773
    • Koide Y, Onishi K, Nishimoto D, Baruah AR, Kanazawa A, Sano Y (2008) Sex-independent transmission ratio distortion system responsible for reproductive barriers between Asian and African rice species. New Phytol 179:888–900. doi:10.1111/j.1469-8137.2008.02490.x
    • (2008) New Phytol , vol.179 , pp. 888-900
    • Koide, Y.1    Onishi, K.2    Nishimoto, D.3    Baruah, A.R.4    Kanazawa, A.5    Sano, Y.6
  • 37
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi DD (1943) The estimation of map distances from recombination values. Ann Eugen 12:172–175. doi:10.1111/j.1469-1809.1943.tb02321.x
    • (1943) Ann Eugen , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 38
    • 0036919449 scopus 로고    scopus 로고
    • Reciprocal chromosome segment substitution series derived from japonica and indica cross of rice (Oryza sativa L.)
    • COI: 1:CAS:528:DC%2BD3sXht1Wku70%3D
    • Kubo T, Aida Y, Nakamura K, Tsunematsu H, Doi K, Yoshimura A (2002) Reciprocal chromosome segment substitution series derived from japonica and indica cross of rice (Oryza sativa L.). Breed Sci 52:319–325
    • (2002) Breed Sci , vol.52 , pp. 319-325
    • Kubo, T.1    Aida, Y.2    Nakamura, K.3    Tsunematsu, H.4    Doi, K.5    Yoshimura, A.6
  • 39
    • 0028815781 scopus 로고
    • Androgenesis of highly recalcitrant rice genotypes with maltose and silver nitrate
    • COI: 1:CAS:528:DyaK2MXnslyktLo%3D
    • Lentini Z, Reyes P, Martínez CP, Roca WM (1995) Androgenesis of highly recalcitrant rice genotypes with maltose and silver nitrate. Plant Sci 110:127–138. doi:10.1016/0168-9452(95)04180-3
    • (1995) Plant Sci , vol.110 , pp. 127-138
    • Lentini, Z.1    Reyes, P.2    Martínez, C.P.3    Roca, W.M.4
  • 40
    • 33846494048 scopus 로고    scopus 로고
    • A modified algorithm for the improvement of composite interval mapping
    • PID: 17110476
    • Li H, Ye G, Wang J (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175:361–374. doi:10.1534/genetics.106.066811
    • (2007) Genetics , vol.175 , pp. 361-374
    • Li, H.1    Ye, G.2    Wang, J.3
  • 41
    • 84871913898 scopus 로고    scopus 로고
    • Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 × Nipponbare in rice (Oryza sativa)
    • PID: 23064615
    • Li S, Yan S, Wang A-h, Zou G, Huang X, Han B, Qian Q, Tao Y (2013) Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 × Nipponbare in rice (Oryza sativa). Plant Cell Rep 32:103–116. doi:10.1007/s00299-012-1345-6
    • (2013) Plant Cell Rep , vol.32 , pp. 103-116
    • Li, S.1    Yan, S.2    Wang, A.-H.3    Zou, G.4    Huang, X.5    Han, B.6    Qian, Q.7    Tao, Y.8
  • 42
    • 0036219762 scopus 로고    scopus 로고
    • Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice
    • COI: 1:CAS:528:DC%2BD38XjtlCitrk%3D
    • Lin H, Ashikari M, Yamanouchi U, Sasaki T, Yano M (2002) Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Breed Sci 52:35–41
    • (2002) Breed Sci , vol.52 , pp. 35-41
    • Lin, H.1    Ashikari, M.2    Yamanouchi, U.3    Sasaki, T.4    Yano, M.5
  • 43
    • 0035004638 scopus 로고    scopus 로고
    • Red and black rice decrease atherosclerotic plaque formation and increase antioxidant status in rabbits
    • COI: 1:CAS:528:DC%2BD3MXjs1agtr8%3D, PID: 11340093
    • Ling WH, Cheng QX, Ma J, Wang T (2001) Red and black rice decrease atherosclerotic plaque formation and increase antioxidant status in rabbits. J Nutr 131:1421–1426
    • (2001) J Nutr , vol.131 , pp. 1421-1426
    • Ling, W.H.1    Cheng, Q.X.2    Ma, J.3    Wang, T.4
  • 44
    • 42149122688 scopus 로고    scopus 로고
    • Detection of QTLs with additive effects and additive-by-environment interaction effects on panicle number in rice (Oryza sativa L.) with single-segment substitution lines
    • COI: 1:CAS:528:DC%2BD1cXkvFyltr0%3D, PID: 18274724
    • Liu G, Zhang Z, Zhu H, Zhao F, Ding X, Zeng R, Li W, Zhang G (2008) Detection of QTLs with additive effects and additive-by-environment interaction effects on panicle number in rice (Oryza sativa L.) with single-segment substitution lines. Theor Appl Genet 116:923–931. doi:10.1007/s00122-008-0724-4
    • (2008) Theor Appl Genet , vol.116 , pp. 923-931
    • Liu, G.1    Zhang, Z.2    Zhu, H.3    Zhao, F.4    Ding, X.5    Zeng, R.6    Li, W.7    Zhang, G.8
  • 46
    • 84865409707 scopus 로고    scopus 로고
    • MapDisto: fast and efficient computation of genetic linkage maps. Mol Breed 30:1231–1235
    • Lorieux M (2012) MapDisto: fast and efficient computation of genetic linkage maps. Mol Breed 30:1231–1235. doi:10.1007/s11032-012-9706-y. http://mapdisto.free.fr/CSSLFinder/
    • (2012)
    • Lorieux, M.1
  • 47
    • 0034110399 scopus 로고    scopus 로고
    • A first interspecific Oryza sativa × Oryza glaberrima microsatellite-based genetic linkage map
    • COI: 1:CAS:528:DC%2BD3cXisVaktLs%3D
    • Lorieux M, Ndjiondjop M-N, Ghesquière A (2000) A first interspecific Oryza sativa × Oryza glaberrima microsatellite-based genetic linkage map. Theor Appl Genet 100:593–601. doi:10.1007/s001229900061
    • (2000) Theor Appl Genet , vol.100 , pp. 593-601
    • Lorieux, M.1    Ndjiondjop, M.-N.2    Ghesquière, A.3
  • 49
    • 0348157455 scopus 로고    scopus 로고
    • Wild rice Oryza meridionalis was first found in Indonesia (notes from field)
    • Lu B-R, Silitonga T (1999) Wild rice Oryza meridionalis was first found in Indonesia (notes from field). Int Rice Res Notes 24:28–30
    • (1999) Int Rice Res Notes , vol.24 , pp. 28-30
    • Lu, B.-R.1    Silitonga, T.2
  • 50
    • 77950019463 scopus 로고    scopus 로고
    • Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice
    • COI: 1:CAS:528:DC%2BC3cXhvFyit7g%3D, PID: 19949767
    • Maas LF, McClung A, McCouch S (2010) Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice. Theor Appl Genet 120:895–908. doi:10.1007/s00122-009-1219-7
    • (2010) Theor Appl Genet , vol.120 , pp. 895-908
    • Maas, L.F.1    McClung, A.2    McCouch, S.3
  • 51
    • 25444487511 scopus 로고    scopus 로고
    • Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon
    • PID: 15949048
    • Marri PR, Sarla N, Reddy LV, Siddiq EA (2005) Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. BMC Genet 6:33
    • (2005) BMC Genet , vol.6 , pp. 33
    • Marri, P.R.1    Sarla, N.2    Reddy, L.V.3    Siddiq, E.A.4
  • 52
    • 0141790005 scopus 로고    scopus 로고
    • A gene block causing cross-incompatibility hidden in wild and cultivated rice
    • COI: 1:CAS:528:DC%2BD3sXosFaltbY%3D, PID: 14504241
    • Matsubara K, Khin-Thidar Sano Y (2003) A gene block causing cross-incompatibility hidden in wild and cultivated rice. Genetics 165:343–352
    • (2003) Genetics , vol.165 , pp. 343-352
    • Matsubara, K.1    Khin-Thidar, S.Y.2
  • 58
    • 84990442906 scopus 로고
    • The recognition of a new species of rice (Oryza) from Australia
    • Ng NQ, Hawkes JG, Williams JT, Chang TT (1981) The recognition of a new species of rice (Oryza) from Australia. Bot J Linn Soc 82:327–330. doi:10.1111/j.1095-8339.1981.tb00964.x
    • (1981) Bot J Linn Soc , vol.82 , pp. 327-330
    • Ng, N.Q.1    Hawkes, J.G.2    Williams, J.T.3    Chang, T.T.4
  • 61
    • 0029954112 scopus 로고    scopus 로고
    • Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)
    • COI: 1:CAS:528:DyaK28XmvFKgsr0%3D, PID: 8914521
    • Panaud O, Chen X, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252:597–607. doi:10.1007/BF02172406
    • (1996) Mol Gen Genet , vol.252 , pp. 597-607
    • Panaud, O.1    Chen, X.2    McCouch, S.R.3
  • 62
    • 0042208126 scopus 로고    scopus 로고
    • Genetic variations of AA genome Oryza species measured by MITE-AFLP
    • COI: 1:CAS:528:DC%2BD3sXlt1Whur0%3D, PID: 12845436
    • Park KC, Kim NH, Cho YS, Kang KH, Lee JK, Kim N-S (2003) Genetic variations of AA genome Oryza species measured by MITE-AFLP. Theor Appl Genet 107:203–209. doi:10.1007/s00122-003-1252-x
    • (2003) Theor Appl Genet , vol.107 , pp. 203-209
    • Park, K.C.1    Kim, N.H.2    Cho, Y.S.3    Kang, K.H.4    Lee, J.K.5    Kim, N.-S.6
  • 64
    • 84879248721 scopus 로고    scopus 로고
    • Yield trends are insufficient to double global crop production by 2050
    • COI: 1:CAS:528:DC%2BC3sXhtVGqtLjE, PID: 23840465
    • Ray DK, Mueller ND, West PC, Foley JA (2013) Yield trends are insufficient to double global crop production by 2050. PLoS ONE 8:e66428. doi:10.1371/journal.pone.0066428
    • (2013) PLoS ONE , vol.8 , pp. 66428
    • Ray, D.K.1    Mueller, N.D.2    West, P.C.3    Foley, J.A.4
  • 65
    • 0346038786 scopus 로고    scopus 로고
    • A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers
    • COI: 1:CAS:528:DC%2BD3sXpsVKru70%3D, PID: 14504744
    • Ren F, Lu B-R, Li S, Huang J, Zhu Y (2003) A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor Appl Genet 108:113–120. doi:10.1007/s00122-003-1414-x
    • (2003) Theor Appl Genet , vol.108 , pp. 113-120
    • Ren, F.1    Lu, B.-R.2    Li, S.3    Huang, J.4    Zhu, Y.5
  • 66
    • 0346668780 scopus 로고
    • Distorted segregation of marker genes in wide crosses of rice
    • Rha ES, Thseng FS, Wu ST (1995) Distorted segregation of marker genes in wide crosses of rice. J Agric Assoc China 170:104–123
    • (1995) J Agric Assoc China , vol.170 , pp. 104-123
    • Rha, E.S.1    Thseng, F.S.2    Wu, S.T.3
  • 68
    • 84881467486 scopus 로고    scopus 로고
    • Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group
    • COI: 1:CAS:528:DC%2BC3sXht1GhurrI, PID: 23811222
    • Saintenac C, Zhang W, Salcedo A, Rouse MN, Trick HN, Akhunov E, Dubcovsky J (2013) Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group. Science 341:783–786. doi:10.1126/science.1239022
    • (2013) Science , vol.341 , pp. 783-786
    • Saintenac, C.1    Zhang, W.2    Salcedo, A.3    Rouse, M.N.4    Trick, H.N.5    Akhunov, E.6    Dubcovsky, J.7
  • 69
    • 0025234772 scopus 로고
    • The genic nature of gamete eliminator in rice
    • COI: 1:CAS:528:DyaK3cXkslGjtLs%3D, PID: 2341030
    • Sano Y (1990) The genic nature of gamete eliminator in rice. Genetics 125:183–191
    • (1990) Genetics , vol.125 , pp. 183-191
    • Sano, Y.1
  • 70
    • 85183831494 scopus 로고
    • A simplified crossing method for rice breeding: a manual. CIAT
    • Sarkarung S (1991) A simplified crossing method for rice breeding: a manual. CIAT, Cali
    • (1991) Cali
    • Sarkarung, S.1
  • 72
    • 0344436676 scopus 로고    scopus 로고
    • Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon
    • COI: 1:STN:280:DC%2BD3srkt1GitQ%3D%3D, PID: 14513216
    • Septiningsih EM, Trijatmiko KR, Moeljopawiro S, McCouch SR (2003) Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1433–1441. doi:10.1007/s00122-003-1376-z
    • (2003) Theor Appl Genet , vol.107 , pp. 1433-1441
    • Septiningsih, E.M.1    Trijatmiko, K.R.2    Moeljopawiro, S.3    McCouch, S.R.4
  • 73
    • 84872789979 scopus 로고    scopus 로고
    • An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping
    • COI: 1:CAS:528:DC%2BC3sXitVylt78%3D, PID: 23372741
    • Sonah H, Bastien M, Iquira E, Tardivel A, Légaré G, Boyle B, Normandeau É, Laroche J, Larose S, Jean M, Belzile F (2013) An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping. PLoS ONE 8:e54603. doi:10.1371/journal.pone.0054603
    • (2013) PLoS ONE , vol.8 , pp. 54603
    • Sonah, H.1    Bastien, M.2    Iquira, E.3    Tardivel, A.4    Légaré, G.5    Boyle, B.6    Normandeau, É.7    Laroche, J.8    Larose, S.9    Jean, M.10    Belzile, F.11
  • 75
    • 84887613153 scopus 로고    scopus 로고
    • Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
    • PID: 23918062
    • Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S (2013) Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor Appl Genet. doi:10.1007/s00122-013-2166-x
    • (2013) Theor Appl Genet
    • Spindel, J.1    Wright, M.2    Chen, C.3    Cobb, J.4    Gage, J.5    Harrington, S.6    Lorieux, M.7    Ahmadi, N.8    McCouch, S.9
  • 76
    • 33745385623 scopus 로고    scopus 로고
    • Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice
    • COI: 1:CAS:528:DC%2BD28Xhs1egu78%3D, PID: 16399804
    • Sweeney MT, Thomson MJ, Pfeil BE, McCouch S (2006) Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell 18:283–294. doi:10.1105/tpc.105.038430
    • (2006) Plant Cell , vol.18 , pp. 283-294
    • Sweeney, M.T.1    Thomson, M.J.2    Pfeil, B.E.3    McCouch, S.4
  • 78
    • 1542332826 scopus 로고    scopus 로고
    • Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice
    • COI: 1:CAS:528:DC%2BD3sXptVCju7c%3D, PID: 17166135
    • Tadege M, Sheldon CC, Helliwell CA, Upadhyaya NM, Dennis ES, Peacock WJ (2003) Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice. Plant Biotechnol J 1:361–369. doi:10.1046/j.1467-7652.2003.00034.x
    • (2003) Plant Biotechnol J , vol.1 , pp. 361-369
    • Tadege, M.1    Sheldon, C.C.2    Helliwell, C.A.3    Upadhyaya, N.M.4    Dennis, E.S.5    Peacock, W.J.6
  • 79
    • 0034934225 scopus 로고    scopus 로고
    • Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2
    • COI: 1:CAS:528:DC%2BD3MXlt1Knt7c%3D, PID: 11416158
    • Takahashi Y, Shomura A, Sasaki T, Yano M (2001) Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. PNAS 98:7922–7927. doi:10.1073/pnas.111136798
    • (2001) PNAS , vol.98 , pp. 7922-7927
    • Takahashi, Y.1    Shomura, A.2    Sasaki, T.3    Yano, M.4
  • 80
    • 0030880972 scopus 로고    scopus 로고
    • Seed banks and molecular maps: unlocking genetic potential from the wild
    • COI: 1:CAS:528:DyaK2sXlsFSisrw%3D, PID: 9262467
    • Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066
    • (1997) Science , vol.277 , pp. 1063-1066
    • Tanksley, S.D.1    McCouch, S.R.2
  • 81
    • 0029812753 scopus 로고    scopus 로고
    • Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines
    • COI: 1:STN:280:DC%2BC2c7gs1Sksg%3D%3D
    • Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theoret Appl Genet 92:191–203. doi:10.1007/BF00223376
    • (1996) Theoret Appl Genet , vol.92 , pp. 191-203
    • Tanksley, S.D.1    Nelson, J.C.2
  • 82
    • 76749109506 scopus 로고    scopus 로고
    • Breeding technologies to increase crop production in a changing world
    • COI: 1:CAS:528:DC%2BC3cXhslWisLg%3D, PID: 20150489
    • Tester M, Langridge P (2010) Breeding technologies to increase crop production in a changing world. Science 327:818–822. doi:10.1126/science.1183700
    • (2010) Science , vol.327 , pp. 818-822
    • Tester, M.1    Langridge, P.2
  • 83
    • 0041473833 scopus 로고    scopus 로고
    • Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson
    • COI: 1:CAS:528:DC%2BD3sXmslSisLs%3D, PID: 12736777
    • Thomson MJ, Tai TH, McClung AM, Lai X-H, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR (2003) Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet 107:479–493. doi:10.1007/s00122-003-1270-8
    • (2003) Theor Appl Genet , vol.107 , pp. 479-493
    • Thomson, M.J.1    Tai, T.H.2    McClung, A.M.3    Lai, X.-H.4    Hinga, M.E.5    Lobos, K.B.6    Xu, Y.7    Martinez, C.P.8    McCouch, S.R.9
  • 84
    • 33646174055 scopus 로고    scopus 로고
    • Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL
    • COI: 1:CAS:528:DC%2BD28XkvFOgt7c%3D, PID: 16452146
    • Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR (2006) Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics 172:2501–2514. doi:10.1534/genetics.105.050500
    • (2006) Genetics , vol.172 , pp. 2501-2514
    • Thomson, M.J.1    Edwards, J.D.2    Septiningsih, E.M.3    Harrington, S.E.4    McCouch, S.R.5
  • 85
    • 30644458994 scopus 로고    scopus 로고
    • Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits
    • COI: 1:CAS:528:DC%2BD28Xnt1yjsL0%3D, PID: 16331476
    • Tian F, Li D, Fu Q, Zhu Z, Fu Y, Wang X, Sun C (2006) Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor Appl Genet 112:570–580. doi:10.1007/s00122-005-0165-2
    • (2006) Theor Appl Genet , vol.112 , pp. 570-580
    • Tian, F.1    Li, D.2    Fu, Q.3    Zhu, Z.4    Fu, Y.5    Wang, X.6    Sun, C.7
  • 86
    • 34249840289 scopus 로고
    • Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
    • COI: 1:STN:280:DC%2BC2c7ktVaitA%3D%3D
    • Wang ZY, Second G, Tanksley SD (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theoret Appl Genet 83:565–581. doi:10.1007/BF00226900
    • (1992) Theoret Appl Genet , vol.83 , pp. 565-581
    • Wang, Z.Y.1    Second, G.2    Tanksley, S.D.3
  • 87
    • 0031660783 scopus 로고    scopus 로고
    • Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon
    • COI: 1:CAS:528:DyaK1cXmvVSmu7g%3D, PID: 9755218
    • Xiao J, Li J, Grandillo S, Ahn SN, Yuan L, Tanksley SD, McCouch SR (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150:899–909
    • (1998) Genetics , vol.150 , pp. 899-909
    • Xiao, J.1    Li, J.2    Grandillo, S.3    Ahn, S.N.4    Yuan, L.5    Tanksley, S.D.6    McCouch, S.R.7
  • 88
    • 0031030365 scopus 로고    scopus 로고
    • 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.)
    • COI: 1:CAS:528:DyaK2sXit1OhtLo%3D, PID: 9065686
    • 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet 253:535–545
    • (1997) Mol Gen Genet , vol.253 , pp. 535-545
    • Xu, Y.1    Zhu, L.2    Xiao, J.3    Huang, N.4    McCouch, S.R.5
  • 89
    • 78549272376 scopus 로고    scopus 로고
    • Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.)
    • COI: 1:CAS:528:DC%2BC3cXhsFagt7rM
    • Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G (2010) Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genom 11:656. doi:10.1186/1471-2164-11-656
    • (2010) BMC Genom , vol.11 , pp. 656
    • Xu, J.1    Zhao, Q.2    Du, P.3    Xu, C.4    Wang, B.5    Feng, Q.6    Liu, Q.7    Tang, S.8    Gu, M.9    Han, B.10    Liang, G.11
  • 90
    • 0034486611 scopus 로고    scopus 로고
    • Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the arabidopsis flowering time gene CONSTANS
    • COI: 1:CAS:528:DC%2BD3MXns1SgsQ%3D%3D, PID: 11148291
    • Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473–2483. doi:10.1105/tpc.12.12.2473
    • (2000) Plant Cell , vol.12 , pp. 2473-2483
    • Yano, M.1    Katayose, Y.2    Ashikari, M.3    Yamanouchi, U.4    Monna, L.5    Fuse, T.6    Baba, T.7    Yamamoto, K.8    Umehara, Y.9    Nagamura, Y.10    Sasaki, T.11
  • 91
    • 78751499668 scopus 로고    scopus 로고
    • Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng
    • Yoshimura A, Nagayama H, Sobrizal, Kurakazu T, Sanchez PL, Doi K, Yamagata Y, Yasui H (2010) Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng. Breed Sci 60:597–603. doi:10.1270/jsbbs.60.597
    • (2010) Breed Sci , vol.60 , pp. 597-603
    • Yoshimura, A.1    Nagayama, H.2    Sobrizal, K.T.3    Sanchez, P.L.4    Doi, K.5    Yamagata, Y.6    Yasui, H.7
  • 92
    • 85047681400 scopus 로고    scopus 로고
    • Improving plant breeding with exotic genetic libraries
    • COI: 1:CAS:528:DC%2BD38Xmt1WgsrY%3D, PID: 11733751
    • Zamir D (2001) Improving plant breeding with exotic genetic libraries. Nat Rev Genet 2:983–989. doi:10.1038/35103590
    • (2001) Nat Rev Genet , vol.2 , pp. 983-989
    • Zamir, D.1
  • 93
    • 21244501403 scopus 로고    scopus 로고
    • Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes
    • COI: 1:CAS:528:DC%2BD2MXmtl2ntrY%3D, PID: 15948847
    • Zhu Q, Ge S (2005) Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytol 167:249–265. doi:10.1111/j.1469-8137.2005.01406.x
    • (2005) New Phytol , vol.167 , pp. 249-265
    • Zhu, Q.1    Ge, S.2
  • 94
    • 84887121031 scopus 로고    scopus 로고
    • Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
    • COI: 1:CAS:528:DC%2BC3sXhvV2nsrfE, PID: 24148990
    • Zhu T, Xu P-Z, Liu J-P, Peng S, Mo X-C, Gao L-Z (2014) Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions. Mol Phylogenet Evol 70:348–361. doi:10.1016/j.ympev.2013.10.008
    • (2014) Mol Phylogenet Evol , vol.70 , pp. 348-361
    • Zhu, T.1    Xu, P.-Z.2    Liu, J.-P.3    Peng, S.4    Mo, X.-C.5    Gao, L.-Z.6


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