N- and P-mediated seminal root elongation response in rice seedlings

Plant and Soil

Volumn 375, Issue 1-2, 2014, Pages 303-315

  Ogawa, Satoshi ^a,b   Selvaraj, Michael Gomez ^a   Fernando, Angela Joseph ^a   Lorieux, Mathias ^a,c   Ishitani, Manabu ^a   McCouch, Susan ^d   Arbelaez, Juan David ^d  

^a INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^b UNIVERSITY OF TOKYO   (Japan)

^c University of Montpellier 2   (France)

^d Cornell University ^*  (United States)

Author keywords

Chromosome segment substitution lines; N acquisition; NH4+ response; Seminal root elongation

Indexed keywords

CHROMOSOME; CONCENTRATION (COMPOSITION); CULTIVATION; DEVELOPMENTAL BIOLOGY; GENETIC VARIATION; NITRATE; NITROGEN; PHOSPHORUS; RICE; ROOT; SEEDLING; SELECTION; WILD POPULATION;

ORYZA RUFIPOGON;

EID: 84893713927     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11104-013-1955-y     Document Type: Article

References (58)

1. Abdul Rahman Z, Musa MH (2009) Upland rice root characteristics and their relationship to nitrogen uptake. Pertanika J Trop Agric Sci 32: 261-266.
2. Balkos KD, Britto DT, Kronzucker HJ (2010) Optimization of ammonium acquisition and metabolism by potassium in rice (Oryza sativa L. cv. IR-72). Plant Cell Environ 33: 23-34.
3. Bates TR, Lynch JP (1996) Stimulation of root hair elongation in Arabidopsis thaliana by low phosphorus availability. Plant Cell Environ 19: 529-538.
4. Bloom AJ, Frensch J, Taylor AR (2006) Influence of inorganic nitrogen and pH on the elongation of maize seminal roots. Ann Bot 97: 867-873.
5. Brar DS, Khush GS (1997) Alien introgression in rice. Plant Mol Biol 35: 35-47.
6. + toxicity in higher plants: a critical review. J Plant Physiol 159: 567-584.
7. Champoux MC, Wang G, Sarkarung S, Mackill DJ, O'Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90: 969-981.
8. + cycling in roots. Plant Soil 369: 351-363.
9. Chin JH, Lu X, Haefele SM, Gamuyao R, Ismail A, Wissuwa M, Heuer S (2010) Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1. Theor Appl Genet 120: 1073-1086.
10. Da Silva AA, Delatorre CA (2009) Alterações na arquitetura de raiz em resposta à disponibilidade de fósforo e nitrogênio. Rev Ciênc Agrov 8: 152-163.
11. De la Torre F, De Santis L, Suárez MF, Crespillo R, Canovás FM (2006) Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism. Plant J 46: 414-425.
12. Duan YH, Zhang YL, Shen QR, Wang SW (2006) Nitrate effect on rice growth and nitrogen absorption and assimilation at different growth stages. Pedosphere 16: 707-717.
13. Falkengren-Grerup U (1995) Interspecies differences in the preference of ammonium and nitrate in vascular plants. Oecologia 102: 305-311.
14. Famoso AN, Clark RT, Shaff JE, Craft E, McCouch SR, Kochian LV (2010) Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiol 153: 1678-1691.
15. Fu Q, Zhang P, Tan L, Zhu Z, Ma D, Fu Y, Zhan X, Cai H, Sun C (2010) Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.). J Genet Genome 37: 147-157.
16. Gastal F, Lemaire G (2002) N uptake and distribution in crops: an agronomical and ecophysiological perspective. J Exp Bot 53: 789-799.
17. Gerendas J, Zhu Z, Bendixen R, Ratcliffe RG, Sattelmacher B (1997) Physiological and biochemical processes related to ammonium toxicity in higher plants. J Plant Nutr Soil Sci 160: 239-251.
18. Hamada A, Nitta M, Nasuda S, Kato K, Fujita M, Matsunaka H, Okumoto Y (2011) Novel QTLs for growth angle of seminal roots in wheat (Triticum aestivum L.). Plant Soil 354: 395-405.
19. Imai I, Kimball JA, Conway B, Yeater KM, McCouch S, McClung A (2013) Validation of yield-enhancing QTLs from a low-yielding wild ancestor of rice. Mol Breed 32: 101120.
20. Jones MP, Dingkuhn M, Aluko GK, Semon M (1997) Interspecific Oryza sativa L. × O. glaberrima Steud. progenies in upland rice improvement. Euphytica 92: 237-246.
21. Kirk GJD, Du LV (1997) Changes in rice root architecture, porosity, and oxygen and proton release under phosphorus deficiency. New Phytol 135: 191-200.
22. Kronzucker HJ, Siddiqi MY, Glass ADM, Kirk GJD (1999) Nitrate-ammonium synergism in rice: a subcellular flux analysis. Plant Physiol 119: 1041-1045.
23. Lian X, Xing Y, Yan H, Xu C, Li X, Zhang Q (2005) QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid. Theor Appl Genet 112: 85-96.
24. Linkohr BI, Williamson LC, Fitter AH, Leyser HMO (2002) Nitrate and phosphate availability and distribution have different effects on root system architecture of Arabidopsis. Plant J 29: 751-760.
25. Lorieux M (2005) CSSL finder: a free program for managing introgression lines. http://mapdisto. free. fr/.
26. Marschner H (1995) Mineral nutrition of higher plants, 2nd edn. Academic, London.
27. Nguyen TV, Pham LN, Nguyen HT (2002) Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, Oryza rufipogon Griff., into indica rice (Oryza sativa L.). Theor Appl Genet 106: 583-593.
28. + concentrations in hydroponic conditions. Theor Appl Genet 121: 535-547.
29. Obara M, Takeda T, Hayakawa T, Yamaya T (2011) Mapping quantitative trait loci controlling root length in rice seedlings grown with low or sufficient supply using backcross recombinant lines derived from a cross between Oryza sativa L. and Oryza glaberrima Steud. Soil Sci Plant Nutr 57: 80-92.
30. Price AH, Tomos AD (1997) Genetic dissection of root growth in rice (Oryza sativa L.) II: mapping quantitative trait loci using molecular markers. Theor Appl Genet 95: 143-152.
31. Price AH, Tomos AD, Virk DS (1997) Genetic dissection of root growth in rice (Oryza sativa L.) I: a hydrophonic screen. Theor Appl Genet 95: 132-142.
32. Rauh BL, Basten C, Buckler ES IV (2002) Quantitative trait loci analysis of growth response to varying nitrogen sources in Arabidopsis thaliana. Theor Appl Genet 104: 743-750.
33. Redoña ED, Mackill DJ (1996) Mapping quantitative trait loci for seedling vigor in rice using RFLPs. Theor Appl Genet 92: 395-402.
34. Roosta HR, Schjoerring JK (2008) Root carbon enrichment alleviates ammonium toxicity in cucumber plants. J Plant Nutr 31: 941-958.
35. Rorison IH (1985) Nitrogen source and the tolerance of Deschampsia flexuosa, Holcus lanatus and Bromus erectus to aluminium during seedling growth. J Ecol 73: 83-90.
36. Rubio V, Linhares F, Solano R, Martin AC, Iglesias J, Leyva A, Paz-Ares J (2001) A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and unicellular algae. Genes Dev 15: 2122-2133.
37. Sakai T, Duque MC, Cabrera FA, Martínez PC, Ishitani M (2010) Establishment of drought screening protocols for rice under field conditions. Acta Agron 59: 338-346.
38. Shimizu A, Yanagihara S, Kawasaki S, Ikehashi H (2004) Phosphorus deficiency-induced root elongation and its QTL in rice (Oryza sativa L.). Theor Appl Genet 109: 1361-1368.
39. Song J, Yamamoto K, Shomura A, Yano M, Minobe Y, Sasaki T (1996) Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L. DNA Res 3: 303-310.
40. Song W, Makeen K, Wang D, Zhang C, Xu Y, Zhao H, Tu E, Zhang Y, Shen Q, Xu G (2011) Nitrate supply affects root growth differentially in two rice cultivars differing in nitrogen use efficiency. Plant Soil 343: 357-368.
41. Subbarao GV, Ishikawa T, Ito OA, Nakahara K, Wang HY, Berry WL (2006) A bioluminescence assay to detect nitrification inhibitors released from plant roots: a case study with Brachiaria humidicola. Plant Soil 288: 101-112.
42. Suenaga A, Moriya K, Sonoda Y, Ikeda A, Von Wiren N, Hayakawa T, Yamaguchi J, Yamaya T (2003) Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants. Plant Cell Physiol 44: 206-211.
43. + nitrogen in several rice (Oryza sativa) cultivars. Jpn J Crop Sci 62: 288-293.
44. Thomson MJ, Tai TH, McClung AM, Lai XH, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR (2003) Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet 107: 479-493.
45. Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizeng G, McClung A, Kim H, Ismail AM, Ocampo M, Mojica C, Reveche MY, Dilla-Ermita JC, Mauleon R, Leung H, Bustamante C, McCouch S (2012) High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Mol Breed 29: 875-886.
46. Tuberosa R, Sanguineti MC, Landi P, Giuliani MM, Salvi S, Conti S (2002) Identification of QTLs for root characteristics in maize grown in hydroponics and analysis of their overlap with QTLs for grain yield in the field at two water regimes. Plant Mol Biol 48: 697-712.
47. Vinod KK, Heuer S (2012) Approaches towards nitrogen- and phosphorus-efficient rice. AoB Plants. doi: 10. 1093/aobpla/pls028.
48. + influx across the plasmalemma. Plant Physiol 103: 1259-1267.
49. Williamson LC, Ribrioux SP, Fitter AH, Leyser HM (2001) Phosphate availability regulates root system architecture in Arabidopsis. Plant Physiol 126: 875-882.
50. Wissuwa M, Yano M, Ae N (1998) Mapping of QTLs for phosphorus-deficiency tolerance in rice (Oryza sativa L.). Theor Appl Genet 97: 777-783.
51. Wojciechowski T, Gooding MJ, Ramsay L, Gregory PJ (2009) The effects of dwarfing genes on seedling root growth of wheat. J Exp Bot 60: 2565-2573.
52. Wu P, Liao CY, Hu B, Yi KK, Jin WZ, Ni JJ, He C (2000) QTLs and epistasis for aluminum tolerance in rice (Oryza sativa L.) at different seedling stages. Theor Appl Genet 100: 1295-1303.
53. Xu CG, Li XQ, Xue Y, Huang YW, Gao J, Xing YZ (2004) Comparison of quantitative trait loci controlling seedling characteristics at two seedling stages using rice recombinant inbred lines. Theor Appl Genet 109: 640-647.
54. Yadav R, Courtois B, Huang N, McLaren G (1997) Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice. Theor Appl Genet 94: 619-632.
55. Yeo ME, Yeo AR, Flowers TJ (1994) Photosynthesis and photorespiration in the genus Oryza. J Exp Bot 45: 553-560.
56. Zhang H, Rong H, Pilbeam D (2007) Signalling mechanisms underlying the morphological responses of the root system to nitrogen in Arabidopsis thaliana. J Exp Bot 58: 2329-2338.
57. Zhao XQ, Guo SW, Shinmachi F, Sunairi M, Noguchi A, Hasegawa I, Shen RF (2012) Aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference. Ann Bot 111: 69-77.
58. Zhu J, Mickelson SM, Kaeppler SM, Lynch JP (2006) Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels. Theor Appl Genet 113: 1-10.