Chromosome segment substitution lines: A powerful tool for the introgression of valuable genes from Oryza wild species into cultivated rice (O. sativa)

Rice

Volumn 3, Issue 4, 2010, Pages 218-234

  Ali, M Liakat ^b   Sanchez, Paul L ^c   Yu, Si bin ^d   Lorieux, Mathias ^e,f   Eizenga, Georgia C ^a  

^a USDA ARS Dale Bumpers National Rice Research Center   (United States)

^b UNIVERSITY OF ARKANSAS   (United States)

^c UNIVERSITY OF ARIZONA   (United States)

^d HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^e UNIVERSITÉ DE PERPIGNAN   (France)

^f INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

Author keywords

Backcross inbred lines; Chromosome segment substitution lines; Genome wide genetic stocks; Introgression lines; Oryza sativa; Oryza species

Indexed keywords

ORYZA; ORYZA SATIVA; ZIZANIA;

EID: 84856614330     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1007/s12284-010-9058-3     Document Type: Article

References (142)

1. Ahn SN, Kwon SJ, Suh JP, Kang KH, Kim HJ, Hwang HG, et al. Introgression of Oryza grandiglumis chromatin into rice affecting plant height and grain length. Rice Genet Newsl. 2002a;19:12.
2. Ahn SN, Suh JP, Oh CS, Lee SJ, Suh HS. Development of introgression lines of weedy rice in the background of Tongiltype rice. Rice Genet Newsl. 2002b;19:14.
3. Aida Y, Tsunematsu H, Doi K, Yoshimura A. Development of a series of introgression lines of japonica in the background of indica rice. Rice Genet Newsl. 1998;14:41-2.
4. Ali ML, McClung AM, Jia MH, Kimball JA, McCouch SR, Eizenga GC. A "Rice Diversity Panel" evaluated for genetic and agromorphological diversity between subpopulations and its geographic distribution. Crop Sci. (2011; in review).
5. Amante-Bordeos A, Sitch LA, Nelson R, Dalmaeio RD, Oliva NP, Aswidinnoor H, et al. Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theor Appl Genet. 1992;84:345-54.
6. Ando T, Yamamoto T, Shimizu T, Ma XF, Shomura A, Takeuchi Y, et al. Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosome segment substitution lines in rice. Theor Appl Genet. 2008;116:881-90.
7. Angeles-Shim RB, Asano K, Takashi T, Kitano H, Ashikari M. Mapping of the glabrous gene in rice using CSSLs derived from the cross Oryza sativa subsp. Japonica cv. Koshihikari×O. glaberrima. In: Proc 6th Int Rice Genet Symp, Manila, Philippines. 16-19 Nov. 2009. [CD-ROM].
8. Ashikari M, Matsuoka M. Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends Plant Sci. 2006;11:344-50.
9. Ashikari M et al. Cytokinin oxidase regulates rice grain production. Science. 2005;309:741-5.
10. Brar DS, Khush GS. Wide hybridization and chromosome manipulation in cereals. In: Evans DH, Sharp WR, Amirato PV, editors. Handbook of plant cell culture, vol. 4. Techniques and applications. New York: MacMillan Publ; 1986. p. 221-63.
11. Brar DS, Khush GS. Alien gene introgression in rice. Plant Mol Biol. 1997;35:35-47.
12. Brar DS, Khush GS. Transferring genes from wild species into rice. In: Kang MS, editor. Quanttitative genetics, genomics and plant breeding. Wallingford (UK): CAB International; 2002. p. 197-217.
13. Brar DS, Khush GS. Utilization of wild species of genus Oryza in rice improvement. In: Nanda JS, Sharma SD, editors. Monograph on genus Oryza. Enfield: Science Publ; 2003. p. 283-309.
14. Brar DS, Khush GS. Cytogenetic manipulation and germplasm enhancement of rice. In: Singh RJ, Jauhar PP, editors. Genetic resources, chromosome engineering and crop improvement. Boca Raton: CRC Press; 2006. p. 115-58.
15. Cheema KK, Bains NS, Mangat GS, Das A, Vikal Y, Brar DS, et al. Development of high yielding IR64×Oryza rufipogon (Griff.) introgression lines and identification of introgressed alien chromosome segments using markers. Euphytica. 2008;160:401-9.
16. Chen J, Bughio HUR, Chen D-Z, Liu G-J, Zheng K-L. Development of chromosomal segment substitution lines from a backcross recombinant inbred population of interspecific rice cross. Rice Sci. 2006;13:15-21.
17. Chen X-R, Yang K-S, Fu J-R, Zhu C-I, Peng X-S, He X-P. Identification and genetic analysis of fertility restoration ability in Dongxiang wild rice (Oryza rufipogon). Rice Sci. 2008;15:21-8.
18. Chen Z, Hu F, Xu P, Li J, Deng X, Zhou J, et al. QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, O. longistaminata. Breed Sci. 2009;59:441-5.
19. Chen J, Huang D-R, Wang L, Liu GJ, Zhuang JY. Identificatiion of quantitative trait loci for resistance to whitebacked planthopper, Sogatella furcifera, from an interspecific cross Oryza sativa×O. rufipogon. Breed Sci. 2010;60:153-9.
20. Chaudhary RC, Khush GS. Breeding rice varieties for resistance against Chilo spp. of stem borers in Asia and Africa. Insect Sci Appl. 1990;11:659-69.
21. Chu YE. Genetic basis of crossing barriers between Oryza-perennis subsp. barthii and its related taxa. Evolution. 1970;24:135-44.
22. Chu YE, Oka HI. Introgression across isolating barriers in wild and cultivated Oryza species. Evolution. 1970;24:344-55.
23. Dalmacio RD, Brar DS, Ishii T, Sitch TA, Virmani SS, Khush GS. Identification and transfer of a new cytoplasmic male sterility source from Oryza perennis into indica rice (Oryza sativa). Euphytica. 1995;82:221-5.
24. Deen R, Ramesh K, Gautam SK, Rao YK, Lakshmi VJ, Viraktamath BC, et al. Identification of new gene for BPH resistance introgressed form O. rufipogon. Rice Genet Newsl. 2010;25:70.
25. Devadath S. A strain of Oryza barthii, an African wild rice immune to bacterial blight of rice. Curr Sci India. 1983;52:27-8.
26. Doi K, Iwata N, Yoshimura A. The construction of chromosome substitution lines of African rice (Oryza glaberrima Steud.) in the background of japonica rice (O. sativa L.). Rice Genet Newsl. 1997;14:39-41.
27. Doi K, Sobrizal, Ikeda K, Sanchez PL, Kurakazu T, Nagai Y, Yoshimura A. Developing and evaluating rice chromosome segment substitution lines. In: Proc Int Rice Res Conf, Beijing, China, 16-19 Sept; 2002. p. 289-296.
28. Ebitani T, Takeuchi Y, Nonoue Y, Yamamoto T, Takeuchi K, Yano M. Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari'. Breed Sci. 2005;55:65-73.
29. Eshed Y, Zamir D. Introgression from Lycopersicon pennellii can improve the soluble solids yield of tomato hybrids. Theor Appl Genet. 1994;88:891-7.
30. Eshed Y, Zamir D. An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics. 1995;141:1147-62.
31. Frey KJ, Cox TS, Rodgers DM, Bramel-Cox P. Increasing cereal yields with genes from wild and weedy species. In: Genetics, new frontiers. Chopra VL et al. editors. Proc XV Int Congr Genet, vol. IV. 1984. p. 51-68.
32. Fu X-L, Lu Y-G, Liu X-D, Li JQ. Progress on transfering elite genes from non-AA genome wild rice into Oryza sativa through interspecific hybridization. Rice Sci. 2008;15:79-87.
33. Fu Q, Zhang P, Tan L, Zhu Z, Ma D, Fu Y, et al. Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.). J Genet Genomics. 2010;37:147-57.
34. Fujita D, Doi K, Yoshimura A, Yasui H. Mapping new resistance gene for green rice leafhopper introgressed from Oryza rufipogon Griff. into cultivated rice, Oryza sativa L. Rice Genet Newsl. 2003;20:79.
35. Fujita D, Doi K, Yoshimura A, Yasui H. Introgression of a resistance gene for green leafhopper from Oryza nivara into cultivated rice, Oryza sativa L. Rice Genet Newsl. 2004;21:64.
36. Furuya A, Itoh R, Ishii R. Mechanisms of different responses of leaf photosynthesis in African rice (Oryza glaberrima Steud.) and rice (Oryza sativa L) to low leaf water potential. Jpn J Crop Sci. 1994;63:625-31.
37. Ghesquiere A, Sequier J, Second G, Lorieux M. First steps toward a rational use of African rice, Oryza glaberrima, in rice breeding: a contig line concept. Euphytica. 1997;96:31-9.
38. Gilad Y, Pritchard JK, Thornton K. Characterizing natural variation using next-generation sequencing technologies. Trends Genet. 2009;25:463-71.
39. Guiderdoni E, Piffanelli P, Sallaud C, Gay C, Larmande P, et al. Generation, characterization, and evaluation of the Genoplante rice insertion line library. Proc 1st Int Symp Rice Functional Genomics, Shangai, China. 19-21 Nov. 2003. p. 16.
40. Gutiérrez AG, Carabalí SJ, Giraldo OX, Martínez CP, Correa F, Prado G, et al. Identification of a rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa×O. glaberrima introgression lines. BMC Plant Biol. 2010;10(1):6.
41. Harushima Y, Nakagahra M, Yano M, Sasaki T, Kurata N. Diverse variation of reproductive barriers in three intraspecific rice crosses. Genetics. 2002;160:312-22.
42. Heinrichs EA, Viajante VD, Romena AM. Resistance of wild rices, Oryza spp. to the whorl maggot Hydrellia-Philippina Ferino (Diptera, Ephydridae). Environ Entomol. 1985;14:404-7.
43. Heuer S, Miezan KM. Assessing hybrid sterility in Oryza glaberrima×O. sativa hybrid progenies by PCR marker analysis and crossing with wide compatibility varieties. Theor Appl Genet. 2003;107:902-9.
44. Hoan NT, Sarma NP, Siddiq EA. Identification and characterization of new sources of cytoplasmic male sterility in rice. Plant Breed. 1997;116:547-51.
45. Ishikawa S, Ae N, Yano M. Chromosomal regions with quantitative trait loci controlling cadmium concentration in brown rice (Oryza sativa). New Phytol. 2005;168:345-50.
46. Jena KK, Khush GS. Exploitation of species in rice improvement: opportunities, achievements and future challenges. In: Nanda JS, editor. Rice breeding and genetic: research priorities and challenges. Enfield: Science Publ; 2000. p. 269-84.
47. Jeung JU, Han SS, Cho YC, Hwang HG, Choi HC, Moon HP, et al. Identification of a new source of resistance to blast isolates of Korea in an alien introgression line of rice. Rice Genet Newsl. 2003;20:92.
48. Jeuken MJW, Lindhaut P. The development of lettuce backcross inbred lines (BILs) for exploitation of the Lactuca salina (wild lettuce) germplasm. Theor Appl Genet. 2004;109:394-401.
49. Jin FX, Kwon SJ, Kang KH, Jeong OY, Le LH, Yon DB, et al. Introgression for grain traits from Oryza sativa. Rice Genet Newsl. 2004;21:15.
50. Jungtsung W, Heinrichs EA, Medrano FG. Resistance of wild rices, Oryza spp. to the brown planthopper, Nilaparvata-Lugens (Homoptera, Delphacidae). Environ Entomol. 1986;15:648-53.
51. Kang JW, Suh JP, Kim DM, Oh CS, Oh JM, Ahn SN. QTL Mapping of agronomic traits in an advanced backcross population from a cross between Oryza sativa L. cv. Milyang 23 and O. glaberrima. Korean J Breed Sci. 2008;40:243-9.
52. Keurentjes JJB, Bentsink L, Alonso-Blanco C, Hanhart CJ, Blankestijn-DeVries H, Effgen S, et al. Development of a near isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line population. Genetics. 2007;175:891-905.
53. Khush GS. What will it take to feed 5.0 million rice consumers in 2030. Plant Mol Biol. 2005;59:1-6.
54. Khush GS, Brar DS. Biotechnology for rice breeding: progress and potential impact. In: Int Rice Commission, XX Session (Bangkok, Thailand: FAO). 2002.
55. Khush GS, Ling KC, Aquino RC, Aguiero VM. Breeding for resistance to grassy stunt in rice. Proc 3rd Int Congr Soc Adv Breed Res Asia and Oceania (SABRAO). Plant Breed Papers. 1977;1(4b):3-9.
56. Khush GS, Bacalangco E, Ogawa T. A new gene for resistance to bacterial blight from O. longistaminata. Rice Genet Newsl. 1990;7:121-2.
57. Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, et al. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol. 2008;9:R45.
58. Kimball JA, Moon S, McCouch SR. McClung AM. Oryza rufipogon introgressions improve yield in the U.S. cultivar Jefferson. In: Proc 6th Int Rice Genet Symp, Manila, Philippines. 16-19 Nov. 2009. [CD-ROM].
59. Knorff MV, Wang H, Leon J, Pillen K. Development of candidate introgression lines using an exotic barley accession (Hordeum vulgare ssp. spontaneum) as donor. Theor Appl Genet. 2004;109:1736-45.
60. Kobayashi N, Ikeda R, Domingo IT, Vaughan DA. Resistance to infection of rice tungro viruses and vector resistance in wild species of rice (Oryza spp.). Jpn J Breed. 1993;43:377-87.
61. Kobayashi N, Ikeda R, Vaughan DA. Screening wild-species of rice (Oryza spp.) for resistance to rice tungro disease. Jarq-Jpn Agr Res Q. 1994;28:230-6.
62. Koornneef M, Alonso-Blanco C, Vreugdenhil D. Naturally occuring genetic variation in Arabidopsis thaliana. Annu Rev Plant Biol. 2004;55:141-72.
63. Kurakazu T, Sobrizal, Ikeda K, Sanchez PL, Doi K, Angeles ER, et al. Oryza meridionalis chromosomal segment introgression lines in cultivated rice, O. sativa L. Rice Genet Newsl. 2001;18:81-2.
64. Lawrence PK, Frey KJ. Backcross variability for grain yield in oat species crosses (Avena sativa L. × Avena sterilis L.). Euphytica. 1975;24:77-85.
65. Leung H, Wu J, Lei C, Wu C, Baraoidan M, et al. Forward and reverse genetics using chemicals and irradiation-induced mutants of Indica rice IR64A. Proc 1st Int Symp Rice Functional Genomics. Shangai, China. 19-21 Nov. 2003. p. 20.
66. Lee SJ, Suh CS, Oh CS, McCouch SR, Ahn SN. Development of introgression lines in the background of japonica rice. Rice Genet Newsl. 2003;20:105.
67. Li D, Sun C, Fu Y, Li C, Zhu Z, Chen L, et al. Identification and mapping of genes for improving yield from Chinese common wild rice (O. rufipogon Griff.) using advanced backcross QTL analysis. Chinese Sci Bull. 2002;47:1533-7.
68. Li J, Xiao J, Grandillo S, Jiang L, Wan Y, Deng Q, et al. QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima Steud.) rice. Genome. 2004;47:697-704.
69. Li Z-K, Fu B-Y, Gao Y-M, Xu J-L, Ali J, Lafitte HR, et al. Genomewide introgression lines and their use in genetic and molecular dissection of complex phenotypes in rice (Oryza sativa L.). Plant Mol Biol. 2005;59:33-52.
70. Lin SC, Yuan LP. A mass screeing method for testing grassy stunt disease of rice. Hybrid rice breeding in China. In: Innovative approaches to rice improvement. Int Rice Res Inst, Manila, Philippines.
71. Linh L-H, Jin F-S, Kang K-H, Lee YT, Kwon S-J, Ahn S-N. Mapping quantitative trait loci for heading date and awn length using an advanced backcross line from a cross between Oryza sativa and O. minuta. Breed Sci. 2006;56:341-9.
72. Liu G, Lu G, Zeng L, Wang G-L. Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6. Mol Genet Genomics. 2002;267:472-80.
73. Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR, Tai TH. Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis. Crop Sci. 2005;45:66-76.
74. Lu B-R, Jackson M, Vaughn D. Wild rice taxonomy. In: Rice knowledge bank, Int Rice Res Inst, Philippines. 2010. Available from: http://www.knowledgebank.irri.org/extension/index.php/ wild-rice-taxonomy (verified 13 Dec 2010).
75. Maduoka Y, Kashiwagi T, Hirotsu N, Ishimaru K. Indian rice 'Kasalath' contains genes that improve traits of Japanese premium rice 'Koshihikari'. Theor Appl Genet. 2008;116:603-12.
76. Maas LF, McClung A, McCouch S. Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice. TheorAppl Genet. 2010;120:895-908.
77. Matsushita S, Kurakazu T, Sobrizal, Doi K, Yoshimura A. Mapping genes for awn in rice using Oryza meridionalis introgression lines. Rice Genet Newsl. 2003;20:17.
78. McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, et al. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. Euphytica. 2007;154:317-39.
79. Mitchell-Olds T, Schmitt J. Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature. 2006;441:947-52.
80. Miura K, Lin SY, Yano M, Nagamine T. Mapping quantitative trait loci controlling low temperature germinability in rice (Oryza sativa L.). Breed Sci. 2001;51:293-9.
81. Miura K, Yamamota E, Morinaka Y, Takashi T, Kitano H, Matsuoka M, et al. The hybrid breakdown 1(t) locus induces interspecific hybrid breakdown between rice Oryza sativa cv. Koshihikari and its wild relative O. nivara. Breed Sci. 2008;58:99-105.
82. Morozova O, Marra MA. Application of next-generation sequencing technologies in functional genomics. Genomics. 2008;92:255-64.
83. Multani DS, Khush GS, delos Reyes BG, Brar DS. Alien gene introgression and development of monosomic alien addition line from Oryza latifolia Desv. to rice, Oryza sativa L. Theor Appl Genet. 2003;107:395-405.
84. Nayar NM. Prevalence of self-incompatibility in Oryza barthii Cheval: its bearing on evolution of rice and related taxa. Genetica. 1968;38:521-7.
85. Ni J, Colowit PM, Mackill DJ. Evaluation of genetic diversity in rice subspecies using microsatellite markers. Crop Sci. 2002;42:601-7.
86. Ni J, Pujar A, Youens-Clark K, Yap I, Jaiswal P, Tecle I, Tung CW, Ren L, Spooner W, Wei X, Avraham S, Ware D, Stein L, McCouch SR. Gramene QTL database: Development, content and applications. Database: J Biol Databases and Curation. 2009. doi:10.1093/database/bap005.
87. Ndjiondjop MM, Fargette D, Fauquet C, Ghesquiere A. The genetic basis of high resistance to rice yellow mottle virus (RYMV) in cultivars of two cultivated rice species. Plant Dis. 1999;83:931-5.
88. Ndjiondjop MN, Manneh B, Cissoko M, Drame NK, Kakai GK, Bocco R, et al. Drought resistance in an interspecific backcross population of rice (Oryza spp.) derived from the cross WAB56-104 (O. sativa) × CG14 (O. glaberrima). Plant Sci. 2010;179:364-73.
89. Oka HI. In: Oka HI, editor. Origin of cultivated rice. Tokyo: Elsevier Science/Japan Scientific Societies Press; 1988. p. 254.
90. Orjuela J, Garavito A, Bouniol M, Arbelaez JD, Moreno L, Kimball J, et al. A universal core genetic map for rice. Theor Appl Genet. 2010;120:563-72.
91. Prasad B, Eizenga GC. Rice sheath blight disease resistance identified in Oryza spp. accessions. Plant Dis. 2008;92:1503-9.
92. Rahman ML, Chu SH, Choi MS, Qiao YL, Jiang W, Piao R, et al. Identification of QTLs for some agronomic traits in rice using an introgression line from Oryza minuta. Mol Cells. 2007;24:16-26.
93. Ram T, Majumder ND, Padmavathi G, Mishra B. Improving rice for broad-spectrum resistance to blast and salinity tolerance by introgressing genes from O. rufipogon. Int Rice Res Notes. 2005;30:17-9.
94. Ram T, Laha GS, Gautam SK, Deen R, Madhav MS, Brar DS, et al. Identification of new gene introgressed from Oryza brachyantha with broad-spectrum resistance to bacterial blight of rice in India. Rice Genet Newsl. 2010a;25:57.
95. Ram T, Deen R, Gautam SK, Ramesh K, Rao YK, Brar DS. Identification of new genes for brown planthopper resistance in rice introgressed from O. glaberrima and O. minuta. Rice Genet Newsl. 2010b;25:67.
96. Rangel PN, Brondani RPV, Rangel PHN, Brondani C. Agronomic and molecular characterization of introgression lines from the interspecific cross Oryza sativa (BG90-2) × Oryza glumaepatula (RS-16). Genet Mol Res. 2008;7:184-95.
97. Rick CM. High soluble-solids content in large fruited tomato lines derived from a wild green-fruited species. Hilgardia. 1974;42:493.
98. Sakamoto W, Kadowaki K, Tano S, Yabuno T. Analysis of mitochondrial DNAs from Oryza-glaberrima and its cytoplasmic substituted line for Oryza-sativa associated with cytoplasmic male-sterility. Jpn J Genet. 1990;65:1-6.
99. Sano Y. Constraints in using wild relatives in breeding: lack of basic knowledge on crop gene pools. In: Buxton DR, Shibles R, Forsberg RA, Blad BL, Asay KH, Paulsen GM, Wilson RF, editors. Int Crop Sci I, vol 1. Madison: CSSA; 1993. p. 437-43.
100. Sanchez PL, Sobrizal, Ikeda K, Yasui H, Yoshimura A. RFLP mapping of genes controlling heading date found in Oryza glumaepatula Steud. introgression lines in rice. Rice Genet Newsl. 2001;18:57.
101. Sanchez PL, Kurakazu T, Hirata C, Sobrizal, Yoshimura A. Identification and mapping of seed shattering genes using introgression lines from wild rice species. Rice Genet Newsl. 2002;19:78.
102. Septiningsih EM, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S, et al. Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet. 2003;107:1419-32.
103. Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, et al. Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet. 2008;40:1023-8.
104. Sobrizal, Ikeda K, Sanchez PL, Doi K, Angeles ER, Khush GS, et al. Development of Oryza glumaepatula introgression lines in rice, O. sativa L. Rice Genet Newsl. 1996;16:107-8.
105. Sobrizal, Yoshimura A. Mapping of genes for slender kernel using Oryza glumaepatula introgression lines in rice. Rice Genet Newsl. 2002;19:40.
106. Stebbins GL. Coevolution of grasses and herbivores. Ann Mo Bot Garden. 1981;68:75-86.
107. Suh JP, Roh JH, Cho YC, Han SS, Kim YG, Jena KK. The Pi40 gene for durable resistance to rice blast and molecular analysis of Pi40-advanced backcross breeding lines. Phytopath. 2009;99:243-50.
108. Sun CQ, Wang XK, Li ZC, Yoshimura A, Iwata N. Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff.) and cultivated rice (O. sativa L.) using RFLP markers. Theor Appl Genet. 2001;102:157-62.
109. Takai T, Nonoue Y, Yamamoto S, Yamaonuchi U, Matsubara K, Liang ZW, et al. Development of chromosome segment substitution lines derived from backcross between indica donor rice cultivar 'Nona Bokra' and japonica recipient cultivar 'Koshihikari'. Breed Sci. 2007;57(3):257-61.
110. Takehisa H, Shimodate T, Fukuta Y, Ueda T, Yano M, Yamaya T, et al. Identification of quantitative trait loci for plant growth of rice in paddy field flooded with salt water. Field Crops Res. 2004;89:85-95.
111. Tan L, Liu F, Xue W, Wang G, Ye S, Zhu Z, et al. Development of Oryza rufipogon and O. sativa introgression lines and assessment for yield-related quantitative trait loci. J Integr Plant Biol. 2007;49:871-84.
112. Tanksley SD, McCouch SR. Seed maps and molecular maps: unlocking genetic potential from the wild. Science. 1997;277:1063-6.
113. Thomson MJ, Tai TH, McClung AM, Lai X-H, Hinga ME, Lobos KB, et al. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and Oryza sativa cultivar Jefferson. Theor Appl Genet. 2003;107:479-93.
114. Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, et al. Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yieldrelated traits. Theor Appl Genet. 2006;112:570-80.
115. Tseng ST, Oster JJ. Registration of 87-Y-550, a rice germplasm line resistant to stem rot disease. Crop Sci. 1994;34:314.
116. Tung C-W, Zhao K, Wright M, Ali ML, Jung J, Kimball J, et al. Development of a research platform for dissecting phenotypegenotype assocations in rice (Oryza spp.). Rice. 2010. doi:10.1007/s12284-010-9056-5.
117. Upadhyaya NM, Zhu Q, Eamens A, Margis M, and Ramm K, et al. Ac/Ds for insertional mutagenesis in rice. Proc 1st Int Symp Rice Functional Genomics. Shangai, China. 19-21 Nov. 2003. p. 20.
118. Vales M. Study of complete resistance to Pyricularia-oryzae Cav. of Oryza sativa × Oryza longistaminata hybrids and their Oryza longistaminata parent. Agron Trop. 1985;40:148-56.
119. van Berloo R. GGT 2.0: versatile software for visualization and analysis of genetic data. J Hered. 2008;99:232-6.
120. Vaughan DA. The wild relatives of rice: a genetic resources handbook. Los Banos: IRRI; 1994. p. 137.
121. Vaughan DA, Kadowaki KI, Kaga A, Tomooka N. On the phlylogeny and biogeography of the genus Oryza. Breed Sci. 2005;55:113-22.
122. Velusamy R, Kumar MG, Edward YSJT. Mechanisms of resistance to the brown planthopper Nilaparvata-Lugens in wild-rice (Oryza spp.) cultivars. Entomol Exp Appl. 1995;74:245-51.
123. Wan XY, Wan JM, Su CC, Wang CM, Shen WB, Li JM, et al. QTL detection for eating quality of cooked rice in a population of chromosome segment substitution lines. Theor Appl Genet. 2004;110:71-9.
124. Wan XY, Wan JM, Weng JF, Jiang L, Bi JC, Wang CM, et al. Stability of QTLs for rice grain dimension and endosperm chalkiness charactaeristics across eight environments. Theor Appl Genet. 2005;110:1334-46.
125. Wan XY, Wan JM, Jiang L, Wang JK, Zhai HQ, Weng JF, et al. QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects. Theor Appl Genet. 2006;112:1258-70.
126. Wang J, Wan X, Li H, Pfeiffer WH, Crouch J, Wan J. Application of identified QTL-marker associations in rice quality improvement through a design-breeding approach. Theor Appl Genet. 2007;115:87-100.
127. Wang Y, Sun YJ, Chen DY, Yu SB. Analysis of quantitative trait loci in response to nitrogen and phosphorus deficiency in rice using chromosomal segment substitution lines. Acta Agron Sin. 2009;35:580-7.
128. Wehrhahn C, Allard W. The detection and measurement of the effects of individual genes involved in the inheritance of a quantitative character in wheat. Genetics. 1965;135:1175-86.
129. Wei X, Junfeng X, Guo H, Jiang L, Chen S, Yu C, et al. DTHS suppress flowering in rice influencing plant height and yield potential simultaneously. Plant Physiol. 2010;153:1747-58.
130. 1 pollen sterility in inter-and intraspecific crosses of rice. Breed Sci. 2009;59:411-8.
131. 1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara. Theor Appl Genet. 2010. doi:10.1007/s00122-00-1454-y.
132. Wing RA, Kim HR, Goicoexhea JL, Yu Y, Kudrna D, Zuccolo A, et al. The Oryza Map Alignment Project (OMAP): a new resource for 700 comparative genome studies within Oryza. In: Upadhyaya NM, editor. Rice functional genomics: challenges, progress and prospects. New York: Springer; 2007. p. 395-409.
133. Xi ZY, He FH, Zeng RZ, Zhang ZM, Ding XH, Li W-T, et al. Development of wide population of chromosome segment substitution lines in the genetic background of an elite cultivar of rice (Oryza sativa L.). Genome. 2006;49:476-84.
134. Xiao J, Li J, Grandillo S, Ahn SN, Yuan L, Tanksley SD, et al. Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics. 1998;150:899-909.
135. Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang H-G, et al. Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. Theor Appl Genet. 2006;113:885-94.
136. Yamamoto T, Yano M. Detection and molecular cloning of genes underlying quantitative phenotypic variation in rice. In: Hirano H-Y et al. editors. Rice Biology in the Genomics Era. Biotechnology in Agriculture and Forestry. 2008; 62:295-308.
137. Zamir D. Improving plant breeding with exotic genetic libraries. Nat Rev Genet. 2001;2:983-9.
138. Zhang X, Zhou S, Fu Y, Su Z, Wang X, Sun C. Identification of drought tolerant introgression line derived from Dongxiang common wild rice (O. rufipogon Griff.). Plant Mol Biol. 2006a;62:247-59.
139. Zhang Y, Luo L, Xu C, Zhang Q, Xing Y. Quantitative trait loci for panicle size, heading date and plant height co-segregating in traitperformance derived near isogenic lines of rice (Oryza sativa). Theor Appl Genet. 2006b;113:361-8.
140. Zhao ZG, Jian L, Zhang WW, Yu CY, Zhu SS, Xie K, et al. Fine mapping of S31, a gene responsible for hybrid embryo-sac abortion in rice (Oryza sativa L.). Planta. 2007;226:1087-96.
141. Zhao L, Zhou H, Lu L, Liu L, Li X, Lin Y, et al. Identification of quantitative trait loci controlling rice mature seed culturability using chromosomal segment substitution lines. Plant Cell Rep. 2009;28:247-56.
142. Zhu W, Lin J, Yang D, Zhao L, Zhang Y, Zhu Z, et al. Development of chromosome segment substitution lines derived from backcross between two sequenced rice cultivars, Indica recipient 93-11 and Japonica donor Nipponbare. Plant Mol Biol Rep. 2009;27:126-31.