-
1
-
-
84884597711
-
-
U. S. Department of Health and Human Services
-
U. S. Department of Health and Human Services, "Antibiotic resistance threats in the united states," 2013. [Online]. Available: http://www. cdc. gov/drugresistance/threat-report-2013/
-
(2013)
Antibiotic Resistance Threats in the United States
-
-
-
2
-
-
84922785893
-
We're running out of antibiotics
-
Feb
-
N. Allan, "We're Running Out of Antibiotics," The Atlantic, 19 Feb. 2014. Available: http://www. theatlantic. com/magazine/archive/2014/ 03/were-running-out-of-antibiotics/357573 [Last accessed: 5 May 2014].
-
(2014)
The Atlantic
, vol.19
-
-
Allan, N.1
-
3
-
-
79955936001
-
Race against time to develop new antibiotics
-
World Health Organization
-
World Health Organization, "Race against time to develop new antibiotics," Bulletin of the World Health Organization, vol. 89, pp. 88-89, 2011.
-
(2011)
Bulletin of the World Health Organization
, vol.89
, pp. 88-89
-
-
-
4
-
-
84857411069
-
Designing antimicrobial peptides: Form follows function
-
C. D. Fjell, J. A. Hiss, R. E. Hancock, and G. Schneider, "Designing antimicrobial peptides: form follows function," Nat. Rev. Drug Discov., vol. 11, no. 1, pp. 37-51, 2012.
-
(2012)
Nat. Rev. Drug Discov.
, vol.11
, Issue.1
, pp. 37-51
-
-
Fjell, C.D.1
Hiss, J.A.2
Hancock, R.E.3
Schneider, G.4
-
5
-
-
0042830450
-
Antibacterial peptides: Basic facts and emerging concepts
-
H. G. Boman, "Antibacterial peptides: basic facts and emerging concepts," J. Intern. Med., vol. 254, no. 3, pp. 197-215, 2003.
-
(2003)
J. Intern. Med.
, vol.254
, Issue.3
, pp. 197-215
-
-
Boman, H.G.1
-
6
-
-
35448929949
-
Analysis and prediction of antibacterial peptides
-
S. Lata, B. K. Sharma, and G. P. Raghava, "Analysis and prediction of antibacterial peptides," BMC Bioinformatics, vol. 23, no. 8, pp. 263-272, 2007.
-
(2007)
BMC Bioinformatics
, vol.23
, Issue.8
, pp. 263-272
-
-
Lata, S.1
Sharma, B.K.2
Raghava, G.P.3
-
7
-
-
34249858459
-
AMPer: A database and an automated discovery tool for antimicrobial peptides
-
C. D. Fjell, R. E. Hancock, and A. Cherkasov, "AMPer: a database and an automated discovery tool for antimicrobial peptides," Bioinformatics, vol. 23, no. 9, pp. 1148-1155, 2007.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1148-1155
-
-
Fjell, C.D.1
Hancock, R.E.2
Cherkasov, A.3
-
8
-
-
75149184631
-
AntiBP2: Improved version of antibacterial peptide prediction
-
S. Lata, N. K. Mishra, and G. P. Raghava, "AntiBP2: improved version of antibacterial peptide prediction. " BMC Bioinformatics, vol. 11, no. Suppl 1, pp. S1-S19, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. S1-S19
-
-
Lata, S.1
Mishra, N.K.2
Raghava, G.P.3
-
9
-
-
78049460460
-
An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs
-
W. F. Porto, F. C. Fernandes, and O. L. Franco, "An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs," Lecture Notes in Computer Science, vol. 6268, pp. 59-62, 2010.
-
(2010)
Lecture Notes in Computer Science
, vol.6268
, pp. 59-62
-
-
Porto, W.F.1
Fernandes, F.C.2
Franco, O.L.3
-
10
-
-
79951801514
-
Connecting peptide physicochemical and antimicrobial properties by a rational prediction model
-
M. Torrent, D. Andreu, V. M. Nogués, and E. Boix, "Connecting peptide physicochemical and antimicrobial properties by a rational prediction model," PLoS ONE, vol. 6, no. 2, p. e16968, 2011.
-
(2011)
PLoS ONE
, vol.6
, Issue.2
, pp. e16968
-
-
Torrent, M.1
Andreu, D.2
Nogués, V.M.3
Boix, E.4
-
11
-
-
84871155207
-
Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
-
F. C. Fernandes, D. J. Rigden, and O. L. Franco, "Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application," Peptide Science, vol. 98, no. 4, pp. 280-287, 2012.
-
(2012)
Peptide Science
, vol.98
, Issue.4
, pp. 280-287
-
-
Fernandes, F.C.1
Rigden, D.J.2
Franco, O.L.3
-
12
-
-
84883633978
-
Physicochemical determinants of antimicrobial activity
-
Honolulu, HI, March
-
D. Veltri and A. Shehu, "Physicochemical determinants of antimicrobial activity," in Intl Conf on Bioinf and Comp Biol (BICoB), Honolulu, HI, March 2013.
-
(2013)
Intl Conf on Bioinf and Comp Biol (BICoB)
-
-
Veltri, D.1
Shehu, A.2
-
13
-
-
84889074285
-
Systematic analysis of global features and model building for recognition of antimicrobial peptides
-
New Orleans, LA, June
-
E. G. Randou, D. Veltri, and A. Shehu, "Systematic analysis of global features and model building for recognition of antimicrobial peptides," in IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), New Orleans, LA, June 2013.
-
(2013)
IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)
-
-
Randou, E.G.1
Veltri, D.2
Shehu, A.3
-
14
-
-
84888141142
-
Binary response models for recognition of antimicrobial peptides
-
Washington, D. C., September
-
-, "Binary response models for recognition of antimicrobial peptides," in ACM Conf on Bioinf and Comp Biol (BCB), Washington, D. C., September 2013, pp. 76-85.
-
(2013)
ACM Conf on Bioinf and Comp Biol (BCB)
, pp. 76-85
-
-
Randou, E.G.1
Veltri, D.2
Shehu, A.3
-
15
-
-
79954616130
-
Prediction of antimicrobial peptides based on sequence alignment and feature selection methods
-
P. Wang et al., "Prediction of antimicrobial peptides based on sequence alignment and feature selection methods," PLoS ONE, vol. 6, p. e18476, 2011.
-
(2011)
PLoS ONE
, vol.6
, pp. e18476
-
-
Wang, P.1
-
16
-
-
64549125571
-
Identification of novel antibacterial peptides by chemoinformatics and machine learning
-
C. D. Fjell, H. Jenssen, K. Hilpert, W. A. Cheung, N. Pante, R. E. Hancock, and A. Cherkasov, "Identification of novel antibacterial peptides by chemoinformatics and machine learning," J. Med. Chem., vol. 52, no. 7, pp. 2006-2015, 2009.
-
(2009)
J. Med. Chem.
, vol.52
, Issue.7
, pp. 2006-2015
-
-
Fjell, C.D.1
Jenssen, H.2
Hilpert, K.3
Cheung, W.A.4
Pante, N.5
Hancock, R.E.6
Cherkasov, A.7
-
17
-
-
12344320524
-
Application of 'inductive' QSAR descriptors for quantification of antibacterial activity of cationic polypeptides
-
A. Cherkasov and B. Jankovic, "Application of 'inductive' QSAR descriptors for quantification of antibacterial activity of cationic polypeptides," Molecules, vol. 9, no. 12, pp. 1034-1052, 2004.
-
(2004)
Molecules
, vol.9
, Issue.12
, pp. 1034-1052
-
-
Cherkasov, A.1
Jankovic, B.2
-
18
-
-
75549090102
-
CAMP: A useful resource for research on antimicrobial peptides
-
S. Thomas, S. Karnik, R. S. Barai, V. K. Jayaraman, and S. I. Thomas, "CAMP: a useful resource for research on antimicrobial peptides," Nucl. Acids Res., vol. 38, no. Suppl 1, pp. D774-D780, 2009.
-
(2009)
Nucl. Acids Res.
, vol.38
, pp. D774-D780
-
-
Thomas, S.1
Karnik, S.2
Barai, R.S.3
Jayaraman, V.K.4
Thomas, S.I.5
-
19
-
-
84875074764
-
IAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types
-
X. Xiao, P. Wang, W.-Z. Lin, J.-H. Jia, and K.-C. Chou, "iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types," Analytical biochemistry, 2013.
-
(2013)
Analytical Biochemistry
-
-
Xiao, X.1
Wang, P.2
Lin, W.-Z.3
Jia, J.-H.4
Chou, K.-C.5
-
20
-
-
0033864862
-
Amphipathic, helical antimicrobial peptides
-
A. Tossi, L. Sandri, and A. Giangaspero, "Amphipathic, helical antimicrobial peptides," Peptide Science, vol. 55, no. 1, pp. 4-30, 2000.
-
(2000)
Peptide Science
, vol.55
, Issue.1
, pp. 4-30
-
-
Tossi, A.1
Sandri, L.2
Giangaspero, A.3
-
21
-
-
84864925579
-
An evolutionary algorithm approach for feature generation from sequence data and its application to dna splice-site prediction
-
U. Kamath, J. Compton, R. Islamaj-Dogan, D. K. A., and A. Shehu, "An evolutionary algorithm approach for feature generation from sequence data and its application to dna splice-site prediction," IEEE/ACM Trans Comp Biol and Bioinf, vol. 9, no. 5, pp. 1387-1398, 2012.
-
(2012)
IEEE/ACM Trans Comp Biol and Bioinf
, vol.9
, Issue.5
, pp. 1387-1398
-
-
Kamath, U.1
Compton, J.2
Islamaj-Dogan, D.K.A.R.3
Shehu, A.4
-
22
-
-
84904490572
-
Effective automated feature construction and selection for classification of biological sequences
-
U. Kamath, K. A. De Jong, and A. Shehu, "Effective automated feature construction and selection for classification of biological sequences," PLoS ONE, vol. 9, no. 7, p. e99982, 2014.
-
(2014)
PLoS ONE
, vol.9
, Issue.7
, pp. e99982
-
-
Kamath, U.1
De Jong, K.A.2
Shehu, A.3
-
23
-
-
1942451938
-
Feature selection for high-dimensional data: A fast correlation-based filter solution
-
L. Yu and H. Liu, "Feature selection for high-dimensional data: A fast correlation-based filter solution," in ICML, vol. 3, 2003, pp. 856-863.
-
(2003)
ICML
, vol.3
, pp. 856-863
-
-
Yu, L.1
Liu, H.2
-
24
-
-
0342980326
-
Optimized representations and maximal information in proteins
-
A. D. Solis and S. Rackovsky, "Optimized representations and maximal information in proteins," Proteins: Structure, Function, and Bioinformatics, vol. 38, no. 2, pp. 149-164, 2000.
-
(2000)
Proteins: Structure, Function, and Bioinformatics
, vol.38
, Issue.2
, pp. 149-164
-
-
Solis, A.D.1
Rackovsky, S.2
-
26
-
-
84959444571
-
-
Springer
-
T. Hastie, R. Tibshirani, J. Friedman, T. Hastie, J. Friedman, and R. Tibshirani, The elements of statistical learning. Springer, 2009, vol. 2, no. 1.
-
(2009)
The Elements of Statistical Learning
, vol.2
, Issue.1
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
Hastie, T.4
Friedman, J.5
Tibshirani, R.6
-
27
-
-
0004255908
-
-
1st ed. Boston, MA: Mc-Graw Hill Companies, Inc.
-
T. M. Mitchell, Machine Learning, 1st ed. Boston, MA: Mc-Graw Hill Companies, Inc., 1997.
-
(1997)
Machine Learning
-
-
Mitchell, T.M.1
-
28
-
-
0347755460
-
APD: The antimicrobial peptide database
-
Z. Wang and G. Wang, "APD: the antimicrobial peptide database," Nucl. Acids Res., vol. 32, no. Suppl. 1, pp. D590-D592, 2004.
-
(2004)
Nucl. Acids Res.
, vol.32
, pp. D590-D592
-
-
Wang, Z.1
Wang, G.2
-
29
-
-
0345059376
-
Announcing the worldwide Protein Data Bank
-
H. M. Berman, K. Henrick, and H. Nakamura, "Announcing the worldwide Protein Data Bank," Nat. Struct. Biol., vol. 10, no. 12, pp. 980-980, 2003.
-
(2003)
Nat. Struct. Biol.
, vol.10
, Issue.12
, pp. 980-980
-
-
Berman, H.M.1
Henrick, K.2
Nakamura, H.3
-
30
-
-
79960976768
-
UniProt knowledgebase: A hub of integrated protein data
-
M. Magrane and the UniProt consortium, "UniProt knowledgebase: a hub of integrated protein data," Database, vol. 2011, no. bar009, pp. 1-13, 2011.
-
(2011)
Database
, vol.2011
, Issue.9
, pp. 1-13
-
-
Magrane, M.1
-
31
-
-
0343621535
-
AAindex: Amino acid index database
-
S. Kawashima and M. Kanehisa, "AAindex: amino acid index database," Nucl. Acids Res., vol. 28, no. 1, p. 374, 2000.
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.1
, pp. 374
-
-
Kawashima, S.1
Kanehisa, M.2
-
32
-
-
27544491192
-
ROCR: Visualizing classifier performance in R
-
T. Sing, O. Sander, N. Beerenwinkel, and T. Lengauer, "ROCR: visualizing classifier performance in R," Bioinformatics, vol. 21, no. 20, pp. 3940-3941, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3940-3941
-
-
Sing, T.1
Sander, O.2
Beerenwinkel, N.3
Lengauer, T.4
-
33
-
-
0023731964
-
Amino acid side chain parameters for correlation studies in biology and pharmacology
-
J.-L. Fauchère, M. Charton, L. B. Kier, A. Verloop, and V. Pliska, "Amino acid side chain parameters for correlation studies in biology and pharmacology," International journal of peptide and protein research, vol. 32, no. 4, pp. 269-278, 1988.
-
(1988)
International Journal of Peptide and Protein Research
, vol.32
, Issue.4
, pp. 269-278
-
-
Fauchère, J.-L.1
Charton, M.2
Kier, L.B.3
Verloop, A.4
Pliska, V.5
-
34
-
-
0026058806
-
Physical reasons for secondary structure stability: Helices in short peptides
-
A. Finkelstein, A. Y. Badretdinov, and O. Ptitsyn, "Physical reasons for secondary structure stability: helices in short peptides," Proteins: Structure, Function, and Bioinformatics, vol. 10, no. 4, pp. 287-299, 1991.
-
(1991)
Proteins: Structure, Function, and Bioinformatics
, vol.10
, Issue.4
, pp. 287-299
-
-
Finkelstein, A.1
Badretdinov, A.Y.2
Ptitsyn, O.3
-
35
-
-
0023368698
-
Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit
-
K. Yutani, K. Ogasahara, T. Tsujita, and Y. Sugino, "Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit," PNAS, vol. 84, no. 13, pp. 4441-4444, 1987.
-
(1987)
PNAS
, vol.84
, Issue.13
, pp. 4441-4444
-
-
Yutani, K.1
Ogasahara, K.2
Tsujita, T.3
Sugino, Y.4
-
36
-
-
5044235541
-
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
-
A.-M. Fernandez-Escamilla, F. Rousseau, J. Schymkowitz, and L. Serrano, "Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins," Nat Biotechnology, vol. 22, no. 10, pp. 1302-1306, 2004.
-
(2004)
Nat Biotechnology
, vol.22
, Issue.10
, pp. 1302-1306
-
-
Fernandez-Escamilla, A.-M.1
Rousseau, F.2
Schymkowitz, J.3
Serrano, L.4
-
37
-
-
0036878154
-
An analysis of protein domain linkers: Their classification and role in protein folding
-
R. A. George and J. Heringa, "An analysis of protein domain linkers: their classification and role in protein folding," Protein Engineering, vol. 15, no. 11, pp. 871-879, 2002.
-
(2002)
Protein Engineering
, vol.15
, Issue.11
, pp. 871-879
-
-
George, R.A.1
Heringa, J.2
-
38
-
-
0031917176
-
Helix capping
-
A. R and R. GD., "Helix capping," Protein Sci., vol. 7, no. 1, pp. 23-38, 1998.
-
(1998)
Protein Sci.
, vol.7
, Issue.1
, pp. 23-38
-
-
Re, A.1
Gd, R.2
-
39
-
-
33646532402
-
Host defence peptides from invertebrates-emerging antimicrobial strategies
-
R. E. Hancock, K. L. Brown, and N. Mookherjee, "Host defence peptides from invertebrates-emerging antimicrobial strategies," Immunobiology, vol. 211, no. 4, pp. 315-322, 2006.
-
(2006)
Immunobiology
, vol.211
, Issue.4
, pp. 315-322
-
-
Hancock, R.E.1
Brown, K.L.2
Mookherjee, N.3
-
40
-
-
67649274356
-
Binding of amphipathic [alpha]-helical antimicrobial peptides to lipid membranes: Lessons from temporins b and l
-
A. K. Mahalka and P. K. Kinnunen, "Binding of amphipathic [alpha]-helical antimicrobial peptides to lipid membranes: Lessons from temporins b and l," Biochimica et Biophysica Acta (BBA)-Biomembranes, vol. 1788, no. 8, pp. 1600-1609, 2009, amphibian Antimicrobial Peptides.
-
(2009)
Biochimica et Biophysica Acta (BBA)-Biomembranes, Amphibian Antimicrobial Peptides
, vol.1788
, Issue.8
, pp. 1600-1609
-
-
Mahalka, A.K.1
Kinnunen, P.K.2
|