-
1
-
-
0016355478
-
A new look at the statistical model identification
-
H. Akaike. A new look at the statistical model identification. IEEE Trans. on Automatic Control, 19(6):716-723, 1974.
-
(1974)
IEEE Trans. on Automatic Control
, vol.19
, Issue.6
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
84864434718
-
Expasy: Sib bioinformatics resource portal
-
P. Artimo, M. Jonnalagedda, K. Arnold, et al. Expasy: Sib bioinformatics resource portal. Nucl. Acids Res., 40(W1):W597-W603, 2012.
-
(2012)
Nucl. Acids Res
, vol.40
, Issue.W1
-
-
Artimo, P.1
Jonnalagedda, M.2
Arnold, K.3
-
4
-
-
0345059376
-
Announcing the worldwide Protein Data Bank
-
H. M. Berman, K. Henrick, and H. Nakamura. Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10(12):980-980, 2003.
-
(2003)
Nat. Struct. Biol.
, vol.10
, Issue.12
, pp. 980-980
-
-
Berman, H.M.1
Henrick, K.2
Nakamura, H.3
-
5
-
-
0042830450
-
Antibacterial peptides: Basic facts and emerging concepts
-
H. G. Boman. Antibacterial peptides: basic facts and emerging concepts. J. Intern. Med., 254(3):197-215, 2003.
-
(2003)
J. Intern. Med.
, vol.254
, Issue.3
, pp. 197-215
-
-
Boman, H.G.1
-
7
-
-
12344320524
-
Application of ̀inductive' QSAR descriptors for quantification of antibacterial activity of cationic polypeptides
-
A. Cherkasov and B. Jankovic. Application of ̀inductive' QSAR descriptors for quantification of antibacterial activity of cationic polypeptides. Molecules, 9(12):1034-1052, 2004.
-
(2004)
Molecules
, vol.9
, Issue.12
, pp. 1034-1052
-
-
Cherkasov, A.1
Jankovic, B.2
-
8
-
-
33947517558
-
AGGRESCAN: A server for the prediction and evaluation of
-
O. Conchillo-Sole, N. de Groot, F. Aviles, J. Vendrell, X. Daura, and S. Ventura. AGGRESCAN: A server for the prediction and evaluation of. BMC bioinformatics, 8(1):65, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 65
-
-
Conchillo-Sole, O.1
De Groot, N.2
Aviles, F.3
Vendrell, J.4
Daura, X.5
Ventura, S.6
-
9
-
-
84889398472
-
-
Wiley & Sons, New York, NY
-
M. Crawley. The R Book. Wiley & Sons, New York, NY, 2013.
-
(2013)
The R Book.
-
-
Crawley, M.1
-
10
-
-
70649083246
-
Cathelicidin peptide SMAP-29: Comprehensive review of its properties and potential as a novel class of antibiotics
-
R. M. Dawson and C.-Q. Liu. Cathelicidin peptide SMAP-29: comprehensive review of its properties and potential as a novel class of antibiotics. Drug Dev. Res., 70(7):481-498, 2009.
-
(2009)
Drug Dev. Res.
, vol.70
, Issue.7
, pp. 481-498
-
-
Dawson, R.M.1
Liu, C.-Q.2
-
11
-
-
79957560165
-
How to cope with the quest for new antibiotics
-
A. Fabbretti, C. O. Gualerzi, and L. Brandi. How to cope with the quest for new antibiotics. FEBS Lett., 585(11):1673-1681, 2011.
-
(2011)
FEBS Lett.
, vol.585
, Issue.11
, pp. 1673-1681
-
-
Fabbretti, A.1
Gualerzi, C.O.2
Brandi, L.3
-
12
-
-
79959448080
-
Antibiotics as probes of biological complexity
-
S. B. Falconer, T. L. Czarny, and E. D. Brown. Antibiotics as probes of biological complexity. Nat. Chem. Biol., 7(7):415-423, 2011.
-
(2011)
Nat. Chem. Biol.
, vol.7
, Issue.7
, pp. 415-423
-
-
Falconer, S.B.1
Czarny, T.L.2
Brown, E.D.3
-
13
-
-
84871155207
-
Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
-
F. C. Fernandes, D. J. Rigden, and O. L. Franco. Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application. Peptide Science, 98(4):280-287, 2012.
-
(2012)
Peptide Science
, vol.98
, Issue.4
, pp. 280-287
-
-
Fernandes, F.C.1
Rigden, D.J.2
Franco, O.L.3
-
14
-
-
5044235541
-
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
-
A.-M. Fernandez-Escamilla, F. Rousseau, J. Schymkowitz, and L. Serrano. Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat Biotechnology, 22(10):1302-1306, 2004.
-
(2004)
Nat Biotechnology
, vol.22
, Issue.10
, pp. 1302-1306
-
-
Fernandez-Escamilla, A.-M.1
Rousseau, F.2
Schymkowitz, J.3
Serrano, L.4
-
15
-
-
52249108453
-
Identification of novel host defense peptides and the absence of α-defensins in the bovine genome
-
C. D. Fjell et al. Identification of novel host defense peptides and the absence of α-defensins in the bovine genome. Proteins: Struct. Funct. Bioinf., 73:420-430, 2008.
-
(2008)
Proteins: Struct. Funct. Bioinf.
, vol.73
, pp. 420-430
-
-
Fjell, C.D.1
-
16
-
-
34249858459
-
AMPer: A database and an automated discovery tool for antimicrobial peptides
-
C. D. Fjell, R. E. Hancock, and A. Cherkasov. AMPer: A database and an automated discovery tool for antimicrobial peptides. Bioinformatics, 23(9):1148-1155, 2007.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1148-1155
-
-
Fjell, C.D.1
Hancock, R.E.2
Cherkasov, A.3
-
17
-
-
84857411069
-
Designing antimicrobial peptides: Form follows function
-
C. D. Fjell, J. A. Hiss, R. E. Hancock, and G. Schneider. Designing antimicrobial peptides: form follows function. Nat. Rev. Drug Discov., 11(1):37-51, 2012.
-
(2012)
Nat. Rev. Drug Discov.
, vol.11
, Issue.1
, pp. 37-51
-
-
Fjell, C.D.1
Hiss, J.A.2
Hancock, R.E.3
Schneider, G.4
-
18
-
-
64549125571
-
Identification of novel antibacterial peptides by chemoinformatics and machine learning
-
C. D. Fjell, H. Jenssen, K. Hilpert, W. A. Cheung, N. Pante, R. E. Hancock, and A. Cherkasov. Identification of novel antibacterial peptides by chemoinformatics and machine learning. J. Med. Chem., 52(7):2006-2015, 2009.
-
(2009)
J. Med. Chem.
, vol.52
, Issue.7
, pp. 2006-2015
-
-
Fjell, C.D.1
Jenssen, H.2
Hilpert, K.3
Cheung, W.A.4
Pante, N.5
Hancock, R.E.6
Cherkasov, A.7
-
19
-
-
15044347981
-
Surface plasmon resonance analysis of antimicrobial peptide-membrane interactions: Affinity and mechansim of action
-
K. Hall, H. Mozsolits, and M. I. Aguilar. Surface plasmon resonance analysis of antimicrobial peptide-membrane interactions: Affinity and mechansim of action. Lett. Pept. Sci., 10:475-485, 2004.
-
(2004)
Lett. Pept. Sci.
, vol.10
, pp. 475-485
-
-
Hall, K.1
Mozsolits, H.2
Aguilar, M.I.3
-
20
-
-
33646532402
-
Host defence peptides from invertebrates - emerging antimicrobial strategies
-
R. E. Hancock, K. L. Brown, and N. Mookherjee. Host defence peptides from invertebrates - emerging antimicrobial strategies. Immunobiology, 211(4):315 - 322, 2006.
-
(2006)
Immunobiology
, vol.211
, Issue.4
, pp. 315-322
-
-
Hancock, R.E.1
Brown, K.L.2
Mookherjee, N.3
-
21
-
-
38349009178
-
Studies on anticancer activities of antimicrobial peptides
-
D. W. Hoskin and A. Ramamoorthy. Studies on anticancer activities of antimicrobial peptides. Biochim. Biophys. Acta, 1778(2):357-375, 2008.
-
(2008)
Biochim. Biophys. Acta
, vol.1778
, Issue.2
, pp. 357-375
-
-
Hoskin, D.W.1
Ramamoorthy, A.2
-
22
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction - The phobius web server
-
L. Kall, A. Krogh, and E. L. Sonnhammer. Advantages of combined transmembrane topology and signal peptide prediction - The phobius web server. Nucl. Acids Res., 35(suppl 2):W429-W432, 2007.
-
(2007)
Nucl. Acids Res.
, vol.35
, Issue.SUPPL. 2
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
23
-
-
84864925579
-
N evolutionary algorithm approach for feature generation from sequence data and its application to dna splice-site prediction
-
in press
-
U. Kamath, J. Compton, R. Islamaj-Dogan, D. K. A., and A. Shehu. n evolutionary algorithm approach for feature generation from sequence data and its application to dna splice-site prediction. Trans Comp Biol and Bioinf, 2012. in press.
-
(2012)
Trans Comp Biol and Bioinf
-
-
Kamath, U.1
Compton, J.2
Islamaj-Dogan, R.3
Ao, D.K.4
Shehu, A.5
-
24
-
-
77955874036
-
Selecting predictive features for recognition of hypersensitive sites of regulatory genomic sequences with an evolutionary algorithm
-
ACM
-
U. Kamath, K. A. De Jong, and A. Shehu. Selecting predictive features for recognition of hypersensitive sites of regulatory genomic sequences with an evolutionary algorithm. In GECCO, pages 179-186. ACM, 2010.
-
(2010)
GECCO
, pp. 179-186
-
-
Kamath, U.1
De Jong, K.A.2
Shehu, A.3
-
25
-
-
80051978723
-
N evolutionary-based approach for feature generation: Eukaryotic promoter recognition
-
A. E. Smith, editor, IEEE Press
-
U. Kamath, K. A. De Jong, and A. Shehu. n evolutionary-based approach for feature generation: Eukaryotic promoter recognition. In A. E. Smith, editor, IEEE CEC, pages 277-284. IEEE Press, 2011.
-
(2011)
IEEE CEC
, pp. 277-284
-
-
Kamath, U.1
De Jong, K.A.2
Shehu, A.3
-
26
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
J. Kyte and R. Doolittle. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157:105-132, 1982.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.2
-
27
-
-
75149184631
-
AntiBP2: Improved version of antibacterial peptide prediction
-
S. Lata, N. K. Mishra, and G. P. Raghava. AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinformatics, 11(Suppl 1):S1-S19, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL. 1
-
-
Lata, S.1
Mishra, N.K.2
Raghava, G.P.3
-
28
-
-
35448929949
-
Analysis and prediction of antibacterial peptides
-
S. Lata, B. K. Sharma, and G. P. Raghava. Analysis and prediction of antibacterial peptides. BMC Bioinformatics, 23(8):263-272, 2007.
-
(2007)
BMC Bioinformatics
, vol.23
, Issue.8
, pp. 263-272
-
-
Lata, S.1
Sharma, B.K.2
Raghava, G.P.3
-
29
-
-
60749118913
-
Antimicrobial peptides: Linking partition, activity and high membrane-bound concentrations
-
M. N. Melo, R. Ferre, and M. A. Castanho. Antimicrobial peptides: linking partition, activity and high membrane-bound concentrations. Nature Rev. Microbiol., 7(3):245-250, 2009.
-
(2009)
Nature Rev. Microbiol.
, vol.7
, Issue.3
, pp. 245-250
-
-
Melo, M.N.1
Ferre, R.2
Castanho, M.A.3
-
30
-
-
84869416848
-
Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface
-
B. Olson and A. Shehu. Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface. Proteome Sci, 10(Suppl 1):S5, 2012.
-
(2012)
Proteome Sci
, vol.10
, Issue.SUPPL. 1
-
-
Olson, B.1
Shehu, A.2
-
31
-
-
33645834508
-
Experimental evolution of resistance to an antimicrobial peptide
-
G. G. Perron, M. Zaslo, and G. Bell. Experimental evolution of resistance to an antimicrobial peptide. Proc. Biol. Sci., 273(1583):251-256, 2006.
-
(2006)
Proc. Biol. Sci.
, vol.273
, Issue.1583
, pp. 251-256
-
-
Perron, G.G.1
Zaslo, M.2
Bell, G.3
-
32
-
-
78049460460
-
An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs
-
W. F. Porto, F. C. Fernandes, and O. L. Franco. An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs. Lecture Notes in Computer Science, 6268:59-62, 2010.
-
(2010)
Lecture Notes in Computer Science
, vol.6268
, pp. 59-62
-
-
Porto, W.F.1
Fernandes, F.C.2
Franco, O.L.3
-
33
-
-
0346186142
-
Two statistical methods for the detection of environmental thresholds
-
S. S. Qian, R. S. King, and C. J. Richardson. Two statistical methods for the detection of environmental thresholds. Ecological Modelling, 166(1):87-97, 2003.
-
(2003)
Ecological Modelling
, vol.166
, Issue.1
, pp. 87-97
-
-
Qian, S.S.1
King, R.S.2
Richardson, C.J.3
-
35
-
-
79957979922
-
Protein epitope mimetics as anti-infectives
-
J. A. Robinson. Protein epitope mimetics as anti-infectives. Curr. Opin. Chem. Biol., 15:379-386, 2011.
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 379-386
-
-
Robinson, J.A.1
-
36
-
-
34548094623
-
Combating bacteria and drug resistance by inhibiting mechanisms of persistence and adaptation
-
P. A. Smith and F. E. Romesberg. Combating bacteria and drug resistance by inhibiting mechanisms of persistence and adaptation. Nat. Chem. Biol., 3:549-556, 2007.
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 549-556
-
-
Smith, P.A.1
Romesberg, F.E.2
-
37
-
-
0034906866
-
Internal validation of predictive models: Efficiency of some procedures for logistic regression analysis
-
E. W. Steyerberg, F. E. Harrel, G. J. Borsboom, and e. al. Internal validation of predictive models: Efficiency of some procedures for logistic regression analysis. J. of Clinical Epidimiology, 54:774-781, 2001.
-
(2001)
J. of Clinical Epidimiology
, vol.54
, pp. 774-781
-
-
Steyerberg, E.W.1
Harrel, F.E.2
Borsboom, G.J.3
-
38
-
-
75549090102
-
CAMP: A useful resource for research on antimicrobial peptides
-
S. Thomas, S. Karnik, R. S. Barai, V. K. Jayaraman, and S. I. Thomas. CAMP: A useful resource for research on antimicrobial peptides. Nucl. Acids Res., 38(Suppl 1):D774-D780, 2009.
-
(2009)
Nucl. Acids Res.
, vol.38
, Issue.SUPPL. 1
-
-
Thomas, S.1
Karnik, S.2
Barai, R.S.3
Jayaraman, V.K.4
Thomas, S.I.5
-
39
-
-
84855164403
-
AMPA: An automated web server for prediction of protein antimicrobial regions
-
M. Torrent, P. Di Tommaso, D. Pulido, et al. AMPA: An automated web server for prediction of protein antimicrobial regions. Bioinformatics, 28(1):130-1, 2011.
-
(2011)
Bioinformatics
, vol.28
, Issue.1
, pp. 130-131
-
-
Torrent, M.1
Tommaso, P.D.2
Pulido, D.3
-
43
-
-
84890214178
-
Antimicrobial peptides: Discovery
-
CABI Bookshop, Wallingford, England
-
G. Wang. Antimicrobial Peptides: Discovery, Design and Novel Therapeutic Strategies. CABI Bookshop, Wallingford, England, 2010.
-
(2010)
Design and Novel Therapeutic Strategies
-
-
Wang, G.1
-
44
-
-
79954616130
-
Prediction of antimicrobial peptides based on sequence alignment and feature selection methods
-
P. Wang et al. Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. PLoS ONE, 6:e18476, 2011.
-
(2011)
PLoS ONE
, vol.6
-
-
Wang, P.1
-
45
-
-
84875074764
-
IAMP-2L: A two-level multi-label classiffer for identifying antimicrobial peptides and their functional types
-
X. Xiao, P. Wang, W.-Z. Lin, J.-H. Jia, and K.-C. Chou. iAMP-2L: A two-level multi-label classiffer for identifying antimicrobial peptides and their functional types. Analytical biochemistry, 2013.
-
(2013)
Analytical Biochemistry
-
-
Xiao, X.1
Wang, P.2
Lin, W.-Z.3
Jia, J.-H.4
Chou, K.-C.5
-
46
-
-
0026511839
-
Antibiotic peptides as mediators of innate immunity
-
M. Zaslo. Antibiotic peptides as mediators of innate immunity. Curr. Opin. Immunol., 4(1):3-7, 1992.
-
(1992)
Curr. Opin. Immunol.
, vol.4
, Issue.1
, pp. 3-7
-
-
Zaslo, M.1
-
47
-
-
0037165196
-
Antimicrobial peptides of multicellular organisms
-
M. Zaslo. Antimicrobial peptides of multicellular organisms. Nature, 415(6870):389-395, 2002.
-
(2002)
Nature
, vol.415
, Issue.6870
, pp. 389-395
-
-
Zaslo, M.1
|