메뉴 건너뛰기




Volumn 30, Issue 24, 2014, Pages 3561-3566

Human structural proteome-wide characterization of Cyclosporine a targets

Author keywords

[No Author keywords available]

Indexed keywords

CALPAIN; CASPASE 3; CYCLOSPORIN; IMMUNOSUPPRESSIVE AGENT; MITOGEN ACTIVATED PROTEIN KINASE 14; PROTEOME;

EID: 84922746640     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu581     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 0023614065 scopus 로고
    • The fungal production of cyclosporine
    • Agathos, S. N. et al. (1987) The fungal production of cyclosporine. Ann. N. Y. Acad. Sci., 506, 657-662.
    • (1987) Ann. N. Y. Acad. Sci. , vol.506 , pp. 657-662
    • Agathos, S.N.1
  • 2
    • 1242276248 scopus 로고    scopus 로고
    • P38-MAPK signals survival by phosphorylation of caspase-8 and caspase-3 in human neutrophils
    • Alvarado-Kristensson, M. et al. (2004) p38-MAPK signals survival by phosphorylation of caspase-8 and caspase-3 in human neutrophils. J. Exp. Med, 199, 449-458.
    • (2004) J. Exp. Med , vol.199 , pp. 449-458
    • Alvarado-Kristensson, M.1
  • 3
    • 0033954256 scopus 로고    scopus 로고
    • The protein data bank
    • Berman, H. M. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 4
    • 0242384898 scopus 로고    scopus 로고
    • In vivo calpain/caspase cross-talk during 3-nitropropionic acidinduced striatal degeneration-Implication of a calpain-mediated cleavage of active caspase-3
    • Bizat, N. et al. (2003) In vivo calpain/caspase cross-talk during 3-nitropropionic acidinduced striatal degeneration-Implication of a calpain-mediated cleavage of active caspase-3. J. Biol. Chem., 278, 43245-43253.
    • (2003) J. Biol. Chem. , vol.278 , pp. 43245-43253
    • Bizat, N.1
  • 5
    • 38349100452 scopus 로고    scopus 로고
    • A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
    • Brylinski, M. and Skolnick, J. (2008) A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation. Proc. Natl Acad. Sci. USA, 105, 129-134.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 129-134
    • Brylinski, M.1    Skolnick, J.2
  • 6
    • 84873324504 scopus 로고    scopus 로고
    • Cyclosporine A-induced apoptosis in renal tubular cells is related to oxidative damage and mitochondrial fission
    • de Arriba, G. et al. (2013) Cyclosporine A-induced apoptosis in renal tubular cells is related to oxidative damage and mitochondrial fission. Toxicol. Lett., 218, 30-38.
    • (2013) Toxicol. Lett. , vol.218 , pp. 30-38
    • De Arriba, G.1
  • 7
    • 69449096248 scopus 로고    scopus 로고
    • Cyclophilin D gene ablation protects mice from ischemic renal injury
    • Devalaraja-Narashimha, K. et al. (2009) Cyclophilin D gene ablation protects mice from ischemic renal injury. Am. J. Physiol. Renal. Physiol., 297, F749-F759.
    • (2009) Am. J. Physiol. Renal. Physiol. , vol.297 , pp. F749-F759
    • Devalaraja-Narashimha, K.1
  • 8
    • 33745672961 scopus 로고    scopus 로고
    • Binding investigation of human 5-lipoxygenase with its inhibitors by SPR technology correlating with molecular docking simulation
    • Du, L. et al. (2006) Binding investigation of human 5-lipoxygenase with its inhibitors by SPR technology correlating with molecular docking simulation. J. Biochem., 139, 715-723.
    • (2006) J. Biochem. , vol.139 , pp. 715-723
    • Du, L.1
  • 9
    • 16244385639 scopus 로고    scopus 로고
    • Cyclosporin a inhibits calcineurin/nuclear factor of activated T-cells signaling and induces apoptosis in retinoblastoma cells
    • Eckstein, L. A. et al. (2005) Cyclosporin a inhibits calcineurin/nuclear factor of activated T-cells signaling and induces apoptosis in retinoblastoma cells. Invest. Ophthalmol. Vis. Sci., 46, 782-790.
    • (2005) Invest. Ophthalmol. Vis. Sci. , vol.46 , pp. 782-790
    • Eckstein, L.A.1
  • 10
    • 0031658439 scopus 로고    scopus 로고
    • Therapeutic concentrations of cyclosporine A, but not FK506, increase P-glycoprotein expression in endothelial and renal tubule cells
    • Hauser, I. A. et al. (1998) Therapeutic concentrations of cyclosporine A, but not FK506, increase P-glycoprotein expression in endothelial and renal tubule cells. Kidney Int., 54, 113-1149.
    • (1998) Kidney Int. , vol.54 , pp. 113-1149
    • Hauser, I.A.1
  • 11
    • 84868573142 scopus 로고    scopus 로고
    • Finding protein targets for small biologically relevant ligands across fold space using inverse ligand binding predictions
    • Hu, G. et al. (2012) Finding protein targets for small biologically relevant ligands across fold space using inverse ligand binding predictions. Structure, 20, 1815-1822.
    • (2012) Structure , vol.20 , pp. 1815-1822
    • Hu, G.1
  • 12
    • 0032469937 scopus 로고    scopus 로고
    • Physiologically based pharmacokinetics of cyclosporine A: Extension to tissue distribution kinetics in rats and scale-up to human
    • Kawai, R. et al. (1998) Physiologically based pharmacokinetics of cyclosporine A: extension to tissue distribution kinetics in rats and scale-up to human. J. Pharmacol. Exp. Ther., 287, 457-468.
    • (1998) J. Pharmacol. Exp. Ther. , vol.287 , pp. 457-468
    • Kawai, R.1
  • 13
    • 68249144628 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: Repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
    • Kinnings, S. L. et al. (2009) Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis. PloS Comp. Biol., 5, e1000423.
    • (2009) PloS Comp. Biol. , vol.5 , pp. e1000423
    • Kinnings, S.L.1
  • 14
    • 78651287426 scopus 로고    scopus 로고
    • DrugBank 3.0: A comprehensive resource for 'omics' research on drugs
    • Knox, C. et al. (2011) DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res., 39, D1035-D1041.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D1035-D1041
    • Knox, C.1
  • 15
    • 84856105458 scopus 로고    scopus 로고
    • Cyclosporine A suppresses immunoglobulin G biosynthesis via inhibition of cyclophilin B in murine hybridomas and B cells
    • Lee, J. et al. (2012) Cyclosporine A suppresses immunoglobulin G biosynthesis via inhibition of cyclophilin B in murine hybridomas and B cells. Int. Immunopharmacol., 12, 42-49.
    • (2012) Int. Immunopharmacol. , vol.12 , pp. 42-49
    • Lee, J.1
  • 16
    • 33846108633 scopus 로고    scopus 로고
    • BindingDB: A web-accessible database of experimentally determined protein-ligand binding affinities
    • Liu, T. et al. (2007) BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res., 35, D198-D201.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D198-D201
    • Liu, T.1
  • 17
    • 0035873497 scopus 로고    scopus 로고
    • P38 Activation is required upstream of potassium current enhancement and caspase cleavage in thiol oxidant-induced neuronal apoptosis
    • McLaughlin, B. et al. (2001) p38 Activation is required upstream of potassium current enhancement and caspase cleavage in thiol oxidant-induced neuronal apoptosis. J. Neurosc., 21, 3303-3311.
    • (2001) J. Neurosc. , vol.21 , pp. 3303-3311
    • McLaughlin, B.1
  • 18
    • 0037648485 scopus 로고    scopus 로고
    • Cross-talk between calpain and caspase proteolytic systems during neuronal apoptosis
    • Neumar, R. W. et al. (2003) Cross-talk between calpain and caspase proteolytic systems during neuronal apoptosis. J. Biol. Chem., 278, 14162-14167.
    • (2003) J. Biol. Chem. , vol.278 , pp. 14162-14167
    • Neumar, R.W.1
  • 19
    • 17444407490 scopus 로고    scopus 로고
    • Kinetic studies of small molecule interactions with protein kinases using biosensor technology
    • Nordin, H. et al. (2005) Kinetic studies of small molecule interactions with protein kinases using biosensor technology. Anal. Biochem., 340, 359-368.
    • (2005) Anal. Biochem. , vol.340 , pp. 359-368
    • Nordin, H.1
  • 20
    • 0036137713 scopus 로고    scopus 로고
    • Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock
    • Osterberg, F. et al. (2002) Automated docking to multiple target structures: incorporation of protein mobility and structural water heterogeneity in AutoDock. Proteins, 46, 34-40.
    • (2002) Proteins , vol.46 , pp. 34-40
    • Osterberg, F.1
  • 21
    • 34547889887 scopus 로고    scopus 로고
    • Calpain inhibition but not reticulum endo-plasmic stress preconditioning protects rat kidneys from p-aminophenol toxicity
    • Peyrou, M. et al. (2007) Calpain inhibition but not reticulum endo-plasmic stress preconditioning protects rat kidneys from p-aminophenol toxicity. Toxicol. Sci., 99, 338-345.
    • (2007) Toxicol. Sci. , vol.99 , pp. 338-345
    • Peyrou, M.1
  • 22
    • 20844440200 scopus 로고    scopus 로고
    • P38 MAP kinase inhibition ameliorates cisplatin nephrotoxicity in mice
    • Ramesh, G. and Reeves, W. B. (2005) p38 MAP kinase inhibition ameliorates cisplatin nephrotoxicity in mice. Am. J. Physiol. Renal. Physiol., 289, F166-F174.
    • (2005) Am. J. Physiol. Renal. Physiol. , vol.289 , pp. F166-F174
    • Ramesh, G.1    Reeves, W.B.2
  • 23
    • 3142604803 scopus 로고    scopus 로고
    • Cyclosporine A and adverse effects on organs: Histochemical studies
    • Rezzani, R. (2004) Cyclosporine A and adverse effects on organs: histochemical studies. Prog. Histochem. Cytochem., 39, 85-128.
    • (2004) Prog. Histochem. Cytochem. , vol.39 , pp. 85-128
    • Rezzani, R.1
  • 24
    • 79960447528 scopus 로고    scopus 로고
    • Cyclosporine A induces apoptosis of human lung adenocarcinoma cells via caspase-dependent pathway
    • Sato, M. et al. (2011) Cyclosporine A induces apoptosis of human lung adenocarcinoma cells via caspase-dependent pathway. Anticancer Res., 31, 2129-2134.
    • (2011) Anticancer Res. , vol.31 , pp. 2129-2134
    • Sato, M.1
  • 25
    • 0032785181 scopus 로고    scopus 로고
    • Serial killers: Ordering caspase activation events in apoptosis
    • Slee, E. A. et al. (1999) Serial killers: ordering caspase activation events in apoptosis. Cell Death Differ., 6, 1067-1074.
    • (1999) Cell Death Differ. , vol.6 , pp. 1067-1074
    • Slee, E.A.1
  • 26
    • 84866685475 scopus 로고    scopus 로고
    • Calpains, mitochondria, and apoptosis
    • Smith, M. A. and Schnellmann, R. G. (2012) Calpains, mitochondria, and apoptosis. Cardiovasc. Res., 96, 32-37.
    • (2012) Cardiovasc. Res. , vol.96 , pp. 32-37
    • Smith, M.A.1    Schnellmann, R.G.2
  • 27
    • 33748276474 scopus 로고    scopus 로고
    • Protein-ligand docking: Current status and future challenges
    • Sousa, S. F. et al. (2006) Protein-ligand docking: Current status and future challenges. Proteins, 65, 15-26.
    • (2006) Proteins , vol.65 , pp. 15-26
    • Sousa, S.F.1
  • 28
    • 84864583593 scopus 로고    scopus 로고
    • Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence
    • Sui, S. J. H. et al. (2012) Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence. Int. J. Antimicrob. Agents, 40, 246-251.
    • (2012) Int. J. Antimicrob. Agents , vol.40 , pp. 246-251
    • Sui, S.J.H.1
  • 29
    • 0024959451 scopus 로고
    • Peptidyl-prolyl cis-trans isomerase is the cyclosporin A-binding protein cyclophilin
    • Takahashi, N. et al. (1989) Peptidyl-prolyl cis-trans isomerase is the cyclosporin A-binding protein cyclophilin. Nature, 337, 473-475.
    • (1989) Nature , vol.337 , pp. 473-475
    • Takahashi, N.1
  • 30
    • 84864745214 scopus 로고    scopus 로고
    • Cyclosporine: A review
    • Tedesco, D. and Haragsim, L. (2012) Cyclosporine: a review. J. Transplant., 2012, 230386.
    • (2012) J. Transplant. , vol.2012 , pp. 230386
    • Tedesco, D.1    Haragsim, L.2
  • 31
    • 2342562556 scopus 로고    scopus 로고
    • Mitogen-activated protein kinases in apoptosis regulation
    • Wada, T. and Penninger, J. M. (2004) Mitogen-activated protein kinases in apoptosis regulation. Oncogene, 23, 2838-2849.
    • (2004) Oncogene , vol.23 , pp. 2838-2849
    • Wada, T.1    Penninger, J.M.2
  • 32
    • 25444507171 scopus 로고    scopus 로고
    • A surface plasmon resonance-based assay for small molecule inhibitors of human cyclophilin A
    • Wear, M. A. et al. (2005) A surface plasmon resonance-based assay for small molecule inhibitors of human cyclophilin A. Anal. Biochem., 345, 214-226.
    • (2005) Anal. Biochem. , vol.345 , pp. 214-226
    • Wear, M.A.1
  • 33
    • 33751534874 scopus 로고    scopus 로고
    • Thermodynamics of the cyclophilin-A/cyclosporin-A interaction: A direct comparison of parameters determined by surface plasmon resonance using Biacore T100 and isothermal titration calorimetry
    • Wear, M. A. and Walkinshaw, M. D. (2006) Thermodynamics of the cyclophilin-A/cyclosporin-A interaction: a direct comparison of parameters determined by surface plasmon resonance using Biacore T100 and isothermal titration calorimetry. Anal. Biochem., 359, 285-287.
    • (2006) Anal. Biochem. , vol.359 , pp. 285-287
    • Wear, M.A.1    Walkinshaw, M.D.2
  • 34
    • 33845262861 scopus 로고    scopus 로고
    • Renal injury due to renin-angiotensin-aldosterone system activation of the transforming growth factor-beta pathway
    • Wolf, G. (2006) Renal injury due to renin-angiotensin-aldosterone system activation of the transforming growth factor-beta pathway. Kidney Int., 70, 1914-1919.
    • (2006) Kidney Int. , vol.70 , pp. 1914-1919
    • Wolf, G.1
  • 35
    • 44449139387 scopus 로고    scopus 로고
    • Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
    • Xie, L. and Bourne, P. E. (2008) Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments. Proc. Natl Acad. Sci. USA, 105, 5441-5446.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 5441-5446
    • Xie, L.1    Bourne, P.E.2
  • 36
    • 67049100457 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: Identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
    • Xie, L. et al. (2009) Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors. PloS Comp. Biol., 5, e100038.
    • (2009) PloS Comp. Biol. , vol.5 , pp. e100038
    • Xie, L.1
  • 37
    • 79953100964 scopus 로고    scopus 로고
    • Structure-based systems biology for analyzing off-target binding
    • Xie, L. et al. (2011) Structure-based systems biology for analyzing off-target binding. Curr. Opin. Struct. Biol., 21, 189-199.
    • (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 189-199
    • Xie, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.