Role of miR-142-3p in the Post-Transcriptional Regulation of the Clock Gene Bmal1 in the Mouse SCN

PLoS ONE

Volumn 8, Issue 6, 2013, Pages

  Shende, Vikram R ^a   Neuendorff, Nichole ^b   Earnest, David J ^a,b  

^a TEXAS A AND M UNIVERSITY   (United States)

^b TEXAS A AND M HEALTH SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 142 3P; PROTEIN BMAL1; UNCLASSIFIED DRUG; 3' UNTRANSLATED REGION; ARNTL PROTEIN, MOUSE; MIRN142 MICRORNA, MOUSE; TRANSCRIPTION FACTOR ARNTL;

3' UNTRANSLATED REGION; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; BINDING SITE; BMAL1 GENE; CIRCADIAN RHYTHM; CONTROLLED STUDY; IN VITRO STUDY; IN VIVO STUDY; MALE; MOLECULAR CLOCK; MOUSE; NONHUMAN; PROTEIN EXPRESSION; SUPRACHIASMATIC NUCLEUS; TRANSCRIPTION REGULATION; ANIMAL; C57BL MOUSE; E BOX ELEMENT; FEEDBACK SYSTEM; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENETICS; HEK293 CELL LINE; HUMAN; METABOLISM; NERVE CELL; PHYSIOLOGY; PROMOTER REGION; RNA INTERFERENCE;

MAMMALIA; MUS;

3' UNTRANSLATED REGIONS; ANIMALS; ARNTL TRANSCRIPTION FACTORS; BINDING SITES; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; E-BOX ELEMENTS; FEEDBACK, PHYSIOLOGICAL; GENE EXPRESSION; HEK293 CELLS; HUMANS; MALE; MICE; MICE, INBRED C57BL; MICRORNAS; NEURONS; PROMOTER REGIONS, GENETIC; RNA INTERFERENCE; SUPRACHIASMATIC NUCLEUS; TRANSCRIPTION, GENETIC;

EID: 84878755438     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0065300     Document Type: Article

References (46)

1. Ralph MR, Foster RG, Davis FC, Menaker M, (1990) Transplanted suprachiasmatic nucleus determines circadian period. Science 247: 975-978.
2. Turek FW, (1985) Circadian neural rhythms in mammals. Annu Rev Physiol 47: 49-64.
3. Bos NP, Mirmiran M, (1990) Circadian rhythms in spontaneous neuronal discharges of the cultured suprachiasmatic nucleus. Brain Res 511: 158-162.
4. Groos G, Hendriks J, (1982) Circadian rhythms in electrical discharge of rat suprachiasmatic neurones recorded in vitro. Neurosci Lett 34: 283-288.
5. Panda S, Antoch MP, Miller BH, Su AI, Schook AB, et al. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109: 307-320.
6. Schwartz WJ, Davidsen LC, Smith CB, (1980) In vivo metabolic activity of a putative circadian oscillator, the rat suprachiasmatic nucleus. J Comp Neurol 189: 157-167.
7. Shibata S, Oomura Y, Kita H, Hattori K, (1982) Circadian rhythmic changes of neuronal activity in the suprachiasmatic nucleus of the rat hypothalamic slice. Brain Res 247: 154-158.
8. Bunger MK, Wilsbacher LD, Moran SM, Clendenin C, Radcliffe LA, et al. (2000) Mop3 is an essential component of the master circadian pacemaker in mammals. Cell 103: 1009-1017.
9. Gekakis N, Staknis D, Nguyen HB, Davis FC, Wilsbacher LD, et al. (1998) Role of the CLOCK protein in the mammalian circadian mechanism. Science 280: 1564-1569.
10. Kume K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, et al. (1999) mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 98: 193-205.
11. Preitner N, Damiola F, Lopez-Molina L, Zakany J, Duboule D, et al. (2002) The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell 110: 251-260.
12. Sato TK, Panda S, Miraglia LJ, Reyes TM, Rudic RD, et al. (2004) A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron 43: 527-537.
13. Shearman LP, Zylka MJ, Weaver DR, Kolakowski LF Jr, Reppert SM, (1997) Two period homologs: circadian expression and photic regulation in the suprachiasmatic nuclei. Neuron 19: 1261-1269.
14. Gallego M, Virshup DM, (2007) Post-translational modifications regulate the ticking of the circadian clock. Nat Rev Mol Cell Biol 8: 139-148.
15. Lee C, Etchegaray JP, Cagampang FR, Loudon AS, Reppert SM, (2001) Posttranslational mechanisms regulate the mammalian circadian clock. Cell 107: 855-867.
16. Kojima S, Shingle DL, Green CB, (2011) Post-transcriptional control of circadian rhythms. J Cell Sci 124: 311-320.
17. Staiger D, Koster T, (2011) Spotlight on post-transcriptional control in the circadian system. Cell Mol Life Sci 68: 71-83.
18. Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
19. Bernstein E, Caudy AA, Hammond SM, Hannon GJ, (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
20. He L, Hannon GJ, (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
21. Lee Y, Ahn C, Han J, Choi H, Kim J, et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419.
22. Cheng HY, Papp JW, Varlamova O, Dziema H, Russell B, et al. (2007) microRNA modulation of circadian-clock period and entrainment. Neuron 54: 813-829.
23. Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, et al. (2009) Integration of microRNA miR-122 in hepatic circadian gene expression. Genes Dev 23: 1313-1326.
24. Kadener S, Menet JS, Sugino K, Horwich MD, Weissbein U, et al. (2009) A role for microRNAs in the Drosophila circadian clock. Genes Dev 23: 2179-2191.
25. Nagel R, Clijsters L, Agami R, (2009) The miRNA-192/194 cluster regulates the Period gene family and the circadian clock. FEBS J 276: 5447-5455.
26. Shende VR, Goldrick MM, Ramani S, Earnest DJ, (2011) Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice. PLoS One 6: e22586.
27. Earnest DJ, Sladek CD, (1986) Circadian rhythms of vasopressin release from individual rat suprachiasmatic explants in vitro. Brain Res 382: 129-133.
28. Liang FQ, Walline R, Earnest DJ, (1998) Circadian rhythm of brain-derived neurotrophic factor in the rat suprachiasmatic nucleus. Neurosci Lett 242: 89-92.
29. Farnell YF, Shende VR, Neuendorff N, Allen GC, Earnest DJ, (2011) Immortalized cell lines for real-time analysis of circadian pacemaker and peripheral oscillator properties. Eur J Neurosci 33: 1533-1540.
30. Allen GC, Farnell Y, Bell-Pedersen D, Cassone VM, Earnest DJ, (2004) Effects of altered Clock gene expression on the pacemaker properties of SCN2.2 cells and oscillatory properties of NIH/3T3 cells. Neuroscience 127: 989-999.
31. Farnell YZ, Allen GC, Nahm SS, Neuendorff N, West JR, et al. (2008) Neonatal alcohol exposure differentially alters clock gene oscillations within the suprachiasmatic nucleus, cerebellum, and liver of adult rats. Alcohol Clin Exp Res 32: 544-552.
32. Nahm SS, Farnell YZ, Griffith W, Earnest DJ, (2005) Circadian regulation and function of voltage-dependent calcium channels in the suprachiasmatic nucleus. J Neurosci 25: 9304-9308.
33. Brennecke J, Stark A, Russell RB, Cohen SM, (2005) Principles of microRNA-target recognition. PLoS Biol 3: e85.
34. Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
35. Yekta S, Shih IH, Bartel DP, (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
36. Honma S, Ikeda M, Abe H, Tanahashi Y, Namihira M, et al. (1998) Circadian oscillation of BMAL1, a partner of a mammalian clock gene Clock, in rat suprachiasmatic nucleus. Biochem Biophys Res Commun 250: 83-87.
37. Maywood ES, O'Brien JA, Hastings MH, (2003) Expression of mCLOCK and other circadian clock-relevant proteins in the mouse suprachiasmatic nuclei. J Neuroendocrinol 15: 329-334.
38. Bae K, Jin X, Maywood ES, Hastings MH, Reppert SM, et al. (2001) Differential functions of mPer1, mPer2, and mPer3 in the SCN circadian clock. Neuron 30: 525-536.
39. Yamamoto T, Nakahata Y, Soma H, Akashi M, Mamine T, et al. (2004) Transcriptional oscillation of canonical clock genes in mouse peripheral tissues. BMC Mol Biol 5: 18.
40. Doench JG, Sharp PA, (2004) Specificity of microRNA target selection in translational repression. Genes Dev 18: 504-511.
41. Lai EC, Tam B, Rubin GM, (2005) Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs. Genes Dev 19: 1067-1080.
42. Baek D, Villen J, Shin C, Camargo FD, Gygi SP, et al. (2008) The impact of microRNAs on protein output. Nature 455: 64-71.
43. Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
44. Huang B, Zhao J, Lei Z, Shen S, Li D, et al. (2009) miR-142-3p restricts cAMP production in CD4+CD25- T cells and CD4+CD25+ TREG cells by targeting AC9 mRNA. EMBO Rep 10: 180-185.
45. Prosser RA, Gillette MU, (1989) The mammalian circadian clock in the suprachiasmatic nuclei is reset in vitro by cAMP. J Neurosci 9: 1073-1081.
46. O'Neill JS, Maywood ES, Chesham JE, Takahashi JS, Hastings MH, (2008) cAMP-dependent signaling as a core component of the mammalian circadian pacemaker. Science 320: 949-953.