-
1
-
-
84885895033
-
The roots-a short history of industrial microbiology and biotechnology
-
COI: 1:CAS:528:DC%2BC3sXlvV2gsb8%3D, PID: 23504077
-
Buchholz K, Collins J (2013) The roots-a short history of industrial microbiology and biotechnology. Appl Microbiol Biotechnol 97:3747–3762
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 3747-3762
-
-
Buchholz, K.1
Collins, J.2
-
2
-
-
0027255719
-
Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme
-
COI: 1:CAS:528:DyaK3sXkvFSjsr0%3D, PID: 8098033
-
Cho HS, Cronan JE (1993) Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme. J Biol Chem 268:9238–9245
-
(1993)
J Biol Chem
, vol.268
, pp. 9238-9245
-
-
Cho, H.S.1
Cronan, J.E.2
-
3
-
-
84896979155
-
In silico assessment of the metabolic capabilities of an engineered functional reversal of the β-oxidation cycle for the synthesis of longer-chain (C ≥ 4) products
-
COI: 1:CAS:528:DC%2BC2cXntFGhsbk%3D, PID: 24569100
-
Cintolesi A, Clomburg JM, Gonzalez R (2014) In silico assessment of the metabolic capabilities of an engineered functional reversal of the β-oxidation cycle for the synthesis of longer-chain (C ≥ 4) products. Metab Eng 23:100–115
-
(2014)
Metab Eng
, vol.23
, pp. 100-115
-
-
Cintolesi, A.1
Clomburg, J.M.2
Gonzalez, R.3
-
4
-
-
84922980443
-
Integrated engineering of β-oxidation reversal and ω-oxidation pathways for the synthesis of medium chain ω-functionalized carboxylic acids
-
Clomburg JM, Blankschien MD, Vick JE, Chou A, Kim S, Gonzalez R (2014) Integrated engineering of β-oxidation reversal and ω-oxidation pathways for the synthesis of medium chain ω-functionalized carboxylic acids. Metab Eng. doi:10.1016/j.ymben.2015.01.007
-
(2014)
Metab Eng
-
-
Clomburg, J.M.1
Blankschien, M.D.2
Vick, J.E.3
Chou, A.4
Kim, S.5
Gonzalez, R.6
-
5
-
-
84869472029
-
A synthetic biology approach to engineer a functional reversal of the β-oxidation cycle
-
COI: 1:CAS:528:DC%2BC38XhsFWjurrP, PID: 23656231
-
Clomburg JM, Vick JE, Blankschien MD, Rodriguez-Moya M, Gonzalez R (2012) A synthetic biology approach to engineer a functional reversal of the β-oxidation cycle. ACS Synth Biol 1:541–554
-
(2012)
ACS Synth Biol
, vol.1
, pp. 541-554
-
-
Clomburg, J.M.1
Vick, J.E.2
Blankschien, M.D.3
Rodriguez-Moya, M.4
Gonzalez, R.5
-
6
-
-
80051941601
-
Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals
-
COI: 1:CAS:528:DC%2BC3MXhtVOkurbN, PID: 21832992
-
Dellomonaco C, Clomburg JM, Miller EN, Gonzalez R (2011) Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals. Nature 476:355–359
-
(2011)
Nature
, vol.476
, pp. 355-359
-
-
Dellomonaco, C.1
Clomburg, J.M.2
Miller, E.N.3
Gonzalez, R.4
-
7
-
-
70350456093
-
A new member of the Escherichia coli fad regulon: transcriptional regulation of fadM (ybaW)
-
COI: 1:CAS:528:DC%2BD1MXhsVSrsrvI, PID: 19684132
-
Feng Y, Cronan JE (2009) A new member of the Escherichia colifad regulon: transcriptional regulation of fadM (ybaW). J Bacteriol 191:6320–6328
-
(2009)
J Bacteriol
, vol.191
, pp. 6320-6328
-
-
Feng, Y.1
Cronan, J.E.2
-
8
-
-
84875140401
-
Catalytic properties of a bacterial acylating acetaldehyde dehydrogenase: evidence for several active oligomeric states and coenzyme a activation upon binding
-
COI: 1:CAS:528:DC%2BC3sXntFGisQ%3D%3D, PID: 23237860
-
Fischer B, Boutserin S, Mazon H, Collin S, Branlant G, Gruez A et al (2013) Catalytic properties of a bacterial acylating acetaldehyde dehydrogenase: evidence for several active oligomeric states and coenzyme a activation upon binding. Chem-Biol Interact 202:70–77
-
(2013)
Chem-Biol Interact
, vol.202
, pp. 70-77
-
-
Fischer, B.1
Boutserin, S.2
Mazon, H.3
Collin, S.4
Branlant, G.5
Gruez, A.6
-
9
-
-
0036180998
-
Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824
-
COI: 1:CAS:528:DC%2BD38XntVGnsw%3D%3D, PID: 11790753
-
Fontaine L, Meynial-Salles I, Girbal L, Yang XH, Croux C, Soucaille P (2002) Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824. J Bacteriol 184:821–830
-
(2002)
J Bacteriol
, vol.184
, pp. 821-830
-
-
Fontaine, L.1
Meynial-Salles, I.2
Girbal, L.3
Yang, X.H.4
Croux, C.5
Soucaille, P.6
-
10
-
-
84856528019
-
Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway
-
COI: 1:CAS:528:DC%2BC38XhvVWit7k%3D, PID: 22105550
-
Gulevich AY, Skorokhodova AY, Sukhozhenko AV, Shakulov RS, Debabov VG (2012) Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway. Biotechnol Lett 34:463–469
-
(2012)
Biotechnol Lett
, vol.34
, pp. 463-469
-
-
Gulevich, A.Y.1
Skorokhodova, A.Y.2
Sukhozhenko, A.V.3
Shakulov, R.S.4
Debabov, V.G.5
-
11
-
-
31344443676
-
A protein network for phospholipid synthesis uncovered by a variant of the tandem affinity purification method in Escherichia coli
-
COI: 1:CAS:528:DC%2BD28XpsVShsg%3D%3D, PID: 16294310
-
Gully D, Bouveret E (2006) A protein network for phospholipid synthesis uncovered by a variant of the tandem affinity purification method in Escherichia coli. Proteomics 6:282–293
-
(2006)
Proteomics
, vol.6
, pp. 282-293
-
-
Gully, D.1
Bouveret, E.2
-
12
-
-
80855131585
-
A prokaryotic acyl-CoA reductase performing reduction of fatty acyl-CoA to fatty alcohol
-
COI: 1:CAS:528:DC%2BC3MXhsVOjsrzP, PID: 22020216
-
Hofvander P, Doan TTP, Hamberg M (2011) A prokaryotic acyl-CoA reductase performing reduction of fatty acyl-CoA to fatty alcohol. FEBS Lett 585:3538–3543
-
(2011)
FEBS Lett
, vol.585
, pp. 3538-3543
-
-
Hofvander, P.1
Doan, T.T.P.2
Hamberg, M.3
-
13
-
-
0036194910
-
Wax ester production from n-alkanes by Acinetobacter sp strain M-1: Ultrastructure of cellular inclusions and role of acyl coenzyme A reductase
-
COI: 1:CAS:528:DC%2BD38XitFSjsr8%3D, PID: 11872467
-
Ishige T, Tani A, Takabe K, Kawasaki K, Sakai Y, Kato N (2002) Wax ester production from n-alkanes by Acinetobacter sp strain M-1: Ultrastructure of cellular inclusions and role of acyl coenzyme A reductase. Appl Environ Microbiol 68:1192–1195
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1192-1195
-
-
Ishige, T.1
Tani, A.2
Takabe, K.3
Kawasaki, K.4
Sakai, Y.5
Kato, N.6
-
14
-
-
84865362287
-
Bio-based production of C2–C6 platform chemicals
-
COI: 1:CAS:528:DC%2BC38XhtVWhu73J, PID: 22766912
-
Jang YS, Kim B, Shin JH, Choi YJ, Choi S, Song CW et al (2012) Bio-based production of C2–C6 platform chemicals. Biotechnol Bioeng 109:2437–2459
-
(2012)
Biotechnol Bioeng
, vol.109
, pp. 2437-2459
-
-
Jang, Y.S.1
Kim, B.2
Shin, J.H.3
Choi, Y.J.4
Choi, S.5
Song, C.W.6
-
15
-
-
3242800469
-
Systematic mutagenesis of the Escherichia coli genome
-
COI: 1:CAS:528:DC%2BD2cXmtFeqsb4%3D, PID: 15262929
-
Kang YS, Durfee T, Glasner JD, Qiu Y, Frisch D, Winterberg KM et al (2004) Systematic mutagenesis of the Escherichia coli genome. J Bacteriol 186:4921–4930
-
(2004)
J Bacteriol
, vol.186
, pp. 4921-4930
-
-
Kang, Y.S.1
Durfee, T.2
Glasner, J.D.3
Qiu, Y.4
Frisch, D.5
Winterberg, K.M.6
-
16
-
-
84905020126
-
Divergence of substrate specificity and function in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB
-
COI: 1:CAS:528:DC%2BC2cXhtFShs73P, PID: 24992697
-
Latham JA, Chen DQ, Allen KN, Dunaway-Mariano D (2014) Divergence of substrate specificity and function in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB. Biochemistry 53:4775–4787
-
(2014)
Biochemistry
, vol.53
, pp. 4775-4787
-
-
Latham, J.A.1
Chen, D.Q.2
Allen, K.N.3
Dunaway-Mariano, D.4
-
17
-
-
84886663126
-
Fatty alcohols for wax esters in Marinobacter aquaeolei VT8: two optional routes in the wax biosynthesis pathway
-
COI: 1:CAS:528:DC%2BC3sXhslejs7%2FJ, PID: 24014533
-
Lenneman EM, Ohlert JM, Palani NP, Barney BM (2013) Fatty alcohols for wax esters in Marinobacter aquaeolei VT8: two optional routes in the wax biosynthesis pathway. Appl Environ Microbiol 79:7055–7062
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 7055-7062
-
-
Lenneman, E.M.1
Ohlert, J.M.2
Palani, N.P.3
Barney, B.M.4
-
18
-
-
84925666935
-
Reversal of the β-oxidation cycle in Saccharomyces cerevisiae for production of fuels and chemicals
-
PID: 24959659
-
Lian J, Zhao H (2014) Reversal of the β-oxidation cycle in Saccharomyces cerevisiae for production of fuels and chemicals. ACS Synth Biol. doi:10.1021/sb500243c
-
(2014)
ACS Synth Biol
-
-
Lian, J.1
Zhao, H.2
-
19
-
-
84890934527
-
Metabolic engineering of fatty acyl-ACP reductase-dependent pathway to improve fatty alcohol production in Escherichia coil
-
COI: 1:CAS:528:DC%2BC2cXjslOrtLY%3D, PID: 24333607
-
Liu R, Zhu FY, Lu L, Fu AS, Lu JK, Deng ZX et al (2014) Metabolic engineering of fatty acyl-ACP reductase-dependent pathway to improve fatty alcohol production in Escherichia coil. Metab Eng 22:10–21
-
(2014)
Metab Eng
, vol.22
, pp. 10-21
-
-
Liu, R.1
Zhu, F.Y.2
Lu, L.3
Fu, A.S.4
Lu, J.K.5
Deng, Z.X.6
-
20
-
-
84865592819
-
A selection platform for carbon chain elongation using the CoA-dependent pathway to produce linear higher alcohols
-
COI: 1:CAS:528:DC%2BC38XhtFahsrbE, PID: 22819734
-
Machado HB, Dekishima Y, Luo H, Lan EI, Liao JC (2012) A selection platform for carbon chain elongation using the CoA-dependent pathway to produce linear higher alcohols. Metab Eng 14:504–511
-
(2012)
Metab Eng
, vol.14
, pp. 504-511
-
-
Machado, H.B.1
Dekishima, Y.2
Luo, H.3
Lan, E.I.4
Liao, J.C.5
-
21
-
-
84879184862
-
A platform pathway for production of 3-hydroxyacids provides a biosynthetic route to 3-hydroxy-gamma-butyrolactone
-
Martin CH, Dhamankar H, Tseng HC, Sheppard MJ, Reisch CR, Prather KLJ (2013) A platform pathway for production of 3-hydroxyacids provides a biosynthetic route to 3-hydroxy-gamma-butyrolactone. Nat Commun 4:9
-
(2013)
Nat Commun
, vol.4
, pp. 9
-
-
Martin, C.H.1
Dhamankar, H.2
Tseng, H.C.3
Sheppard, M.J.4
Reisch, C.R.5
Prather, K.L.J.6
-
22
-
-
84872767064
-
Efficient synthesis of L-lactic acid from glycerol by metabolically engineered Escherichia coli
-
COI: 1:CAS:528:DC%2BC3sXotFCmsr8%3D, PID: 23347598
-
Mazumdar S, Blankschien MD, Clomburg JM, Gonzalez R (2013) Efficient synthesis of L-lactic acid from glycerol by metabolically engineered Escherichia coli. Microb Cell Fact 12:7–11
-
(2013)
Microb Cell Fact
, vol.12
, pp. 7-11
-
-
Mazumdar, S.1
Blankschien, M.D.2
Clomburg, J.M.3
Gonzalez, R.4
-
24
-
-
0016283409
-
Culture Medium for Enterobacteria
-
COI: 1:CAS:528:DyaE2cXlsVygu7k%3D, PID: 4604283
-
Neidhardt FC, Bloch PL, Smith DF (1974) Culture Medium for Enterobacteria. J Bacteriol 119:736–747
-
(1974)
J Bacteriol
, vol.119
, pp. 736-747
-
-
Neidhardt, F.C.1
Bloch, P.L.2
Smith, D.F.3
-
25
-
-
51549103286
-
A novel paradigm of fatty acid β-oxidation exemplified by the thioesterase-dependent partial degradation of conjugated linoleic acid that fully supports growth of Escherichia coli
-
COI: 1:CAS:528:DC%2BD1cXpvFSlsLo%3D, PID: 18702504
-
Nie L, Ren Y, Janakiraman A, Smith S, Schulz H (2008) A novel paradigm of fatty acid β-oxidation exemplified by the thioesterase-dependent partial degradation of conjugated linoleic acid that fully supports growth of Escherichia coli. Biochemistry 47:9618–9626
-
(2008)
Biochemistry
, vol.47
, pp. 9618-9626
-
-
Nie, L.1
Ren, Y.2
Janakiraman, A.3
Smith, S.4
Schulz, H.5
-
26
-
-
84879409422
-
Novel CAD-like enzymes from Escherichia coli K-12 as additional tools in chemical production
-
COI: 1:CAS:528:DC%2BC3sXpsFKjtr0%3D, PID: 23093176
-
Pick A, Ruhmann B, Schmid J, Sieber V (2013) Novel CAD-like enzymes from Escherichia coli K-12 as additional tools in chemical production. Appl Microbiol Biotechnol 97:5815–5824
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 5815-5824
-
-
Pick, A.1
Ruhmann, B.2
Schmid, J.3
Sieber, V.4
-
27
-
-
0031002077
-
Isolation of mutants of Acinetobacter calcoaceticus deficient in wax ester synthesis and complementation of one mutation with a gene encoding a fatty acyl coenzyme a reductase
-
COI: 1:CAS:528:DyaK2sXjtVCmtrk%3D, PID: 9139916
-
Reiser S, Somerville C (1997) Isolation of mutants of Acinetobacter calcoaceticus deficient in wax ester synthesis and complementation of one mutation with a gene encoding a fatty acyl coenzyme a reductase. J Bacteriol 179:2969–2975
-
(1997)
J Bacteriol
, vol.179
, pp. 2969-2975
-
-
Reiser, S.1
Somerville, C.2
-
28
-
-
31544443526
-
Escherichia coli K-12: a cooperatively developed annotation snapshot-2005
-
COI: 1:CAS:528:DC%2BD28Xmsl2gug%3D%3D, PID: 16397293
-
Riley M, Abe T, Arnaud MB, Berlyn MKB, Blattner FR, Chaudhuri RR et al (2006) Escherichia coli K-12: a cooperatively developed annotation snapshot-2005. Nucleic Acids Res 34:1–9
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1-9
-
-
Riley, M.1
Abe, T.2
Arnaud, M.B.3
Berlyn, M.K.B.4
Blattner, F.R.5
Chaudhuri, R.R.6
-
29
-
-
84907373911
-
Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli
-
COI: 1:CAS:528:DC%2BC2cXhtleit7%2FE, PID: 25108218
-
Rodriguez GM, Atsumi S (2014) Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli. Metab Eng 25:227–237
-
(2014)
Metab Eng
, vol.25
, pp. 227-237
-
-
Rodriguez, G.M.1
Atsumi, S.2
-
30
-
-
0003903343
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY:
-
Sambrook J, Fritsch EF, Maniatis T, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2001)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
Russell, D.W.4
-
31
-
-
77955118014
-
Microbial Biosynthesis of Alkanes
-
COI: 1:CAS:528:DC%2BC3cXptlCltLc%3D, PID: 20671186
-
Schirmer A, Rude MA, Li XZ, Popova E, del Cardayre SB (2010) Microbial Biosynthesis of Alkanes. Science 329:559–562
-
(2010)
Science
, vol.329
, pp. 559-562
-
-
Schirmer, A.1
Rude, M.A.2
Li, X.Z.3
Popova, E.4
del Cardayre, S.B.5
-
32
-
-
84894177844
-
Transformation of biomass into commodity chemicals using enzymes or cells
-
COI: 1:CAS:528:DC%2BC3sXhtlGntbbF, PID: 23987659
-
Straathof AJJ (2014) Transformation of biomass into commodity chemicals using enzymes or cells. Chem Rev 114:1871–1908
-
(2014)
Chem Rev
, vol.114
, pp. 1871-1908
-
-
Straathof, A.J.J.1
-
33
-
-
0032703238
-
The ald gene, encoding a coenzyme A-acylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaK1MXnt1Wmur0%3D, PID: 10543811
-
Toth J, Ismaiel AA, Chen JS (1999) The ald gene, encoding a coenzyme A-acylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum. Appl Environ Microbiol 65:4973–4980
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4973-4980
-
-
Toth, J.1
Ismaiel, A.A.2
Chen, J.S.3
-
34
-
-
84922023905
-
FabI and other bacterial enoyl-acyl carrier protein reductases (ENR) support efficient operation of a functional reversal of the β-oxidation cycle
-
Vick JE, Clomburg JM, Blankschien MD, Chou A, Kim S, Gonzalez R (2015) FabI and other bacterial enoyl-acyl carrier protein reductases (ENR) support efficient operation of a functional reversal of the β-oxidation cycle. Appl Environ Microbiol 81 doi:10.1128/AEM.03521-14
-
(2015)
Appl Environ Microbiol
, pp. 81
-
-
Vick, J.E.1
Clomburg, J.M.2
Blankschien, M.D.3
Chou, A.4
Kim, S.5
Gonzalez, R.6
-
35
-
-
82455219013
-
Characterization of a fatty acyl-CoA reductase from Marinobacter aquaeolei VT8: a bacterial enzyme catalyzing the reduction of fatty acyl-CoA to fatty alcohol
-
COI: 1:CAS:528:DC%2BC3MXhtlOmurvP, PID: 22035211
-
Willis RM, Wahlen BD, Seefeldt LC, Barney BM (2011) Characterization of a fatty acyl-CoA reductase from Marinobacter aquaeolei VT8: a bacterial enzyme catalyzing the reduction of fatty acyl-CoA to fatty alcohol. Biochemistry 50:10550–10558
-
(2011)
Biochemistry
, vol.50
, pp. 10550-10558
-
-
Willis, R.M.1
Wahlen, B.D.2
Seefeldt, L.C.3
Barney, B.M.4
-
36
-
-
80052818704
-
Coproduction of acetaldehyde and hydrogen during glucose fermentation by Escherichia coli
-
COI: 1:CAS:528:DC%2BC3MXhtl2isLvF, PID: 21803884
-
Zhu HL, Gonzalez R, Bobik TA (2011) Coproduction of acetaldehyde and hydrogen during glucose fermentation by Escherichia coli. Appl Environ Microbiol 77:6441–6450
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6441-6450
-
-
Zhu, H.L.1
Gonzalez, R.2
Bobik, T.A.3
-
37
-
-
84901348905
-
Synthesis of polyhydroxyalkanoates from glucose that contain medium-chain-length monomers via the reversed fatty acid β-oxidation cycle in Escherichia coli
-
COI: 1:CAS:528:DC%2BC2cXhtFansrrF, PID: 24836703
-
Zhuang Q, Wang Q, Liang Q, Qi Q (2014) Synthesis of polyhydroxyalkanoates from glucose that contain medium-chain-length monomers via the reversed fatty acid β-oxidation cycle in Escherichia coli. Metab Eng 24:78–86
-
(2014)
Metab Eng
, vol.24
, pp. 78-86
-
-
Zhuang, Q.1
Wang, Q.2
Liang, Q.3
Qi, Q.4
-
38
-
-
40149102523
-
Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA
-
COI: 1:CAS:528:DC%2BD1cXhsVKls74%3D, PID: 18247525
-
Zhuang ZH, Song F, Zhao H, Li L, Cao J, Eisenstein E et al (2008) Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA. Biochemistry 47:2789–2796
-
(2008)
Biochemistry
, vol.47
, pp. 2789-2796
-
-
Zhuang, Z.H.1
Song, F.2
Zhao, H.3
Li, L.4
Cao, J.5
Eisenstein, E.6
|