-
1
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
Atsumi S., Hanai T., Liao J.C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 2008, 451:86-89.
-
(2008)
Nature
, vol.451
, pp. 86-89
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
2
-
-
79952910616
-
Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways
-
Bond-Watts B.B., Bellerose R.J., Chang M.C.Y. Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways. Nat. Chem. Biol. 2011, 7:222-227.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 222-227
-
-
Bond-Watts, B.B.1
Bellerose, R.J.2
Chang, M.C.Y.3
-
3
-
-
0024977998
-
0-ATPase of Escherichia coli: mutangenic analysis of the alpha-subunit
-
0-ATPase of Escherichia coli: mutangenic analysis of the alpha-subunit. J. Biol. Chem. 1989, 264:3292-3300.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 3292-3300
-
-
Cain, B.D.1
Simoni, R.D.2
-
4
-
-
0000146513
-
Two-carbon compounds and fatty acids as carbon sources
-
ASM Press, Washington, DC, (October 2005 Posting Date). F. Neidhardt, R.I. Curtiss, J. Ingraha, E. Lin, K. Low, B. Magasanik, W. Reznikoff, N. Riley, M. Schaechter, H. Umbarger (Eds.)
-
Clark D.P., Cronan J.E. Two-carbon compounds and fatty acids as carbon sources. EcoSal-Escherichia coli and Salmonella: Cellular and Molecular Biology 2005, ASM Press, Washington, DC, (October 2005 Posting Date). F. Neidhardt, R.I. Curtiss, J. Ingraha, E. Lin, K. Low, B. Magasanik, W. Reznikoff, N. Riley, M. Schaechter, H. Umbarger (Eds.).
-
(2005)
EcoSal-Escherichia coli and Salmonella: Cellular and Molecular Biology
-
-
Clark, D.P.1
Cronan, J.E.2
-
5
-
-
84869472029
-
A synthetic biology approach to engineer a functional reversal of the β-oxidation cycle
-
Clomburg J.M., Vick J.E., Blankschien M.D., Rodriguez-Moya M., Gonzalez R. A synthetic biology approach to engineer a functional reversal of the β-oxidation cycle. ACS Synth. Biol. 2012, 1:541-554.
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 541-554
-
-
Clomburg, J.M.1
Vick, J.E.2
Blankschien, M.D.3
Rodriguez-Moya, M.4
Gonzalez, R.5
-
6
-
-
0034666431
-
Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli
-
Davis M.S., Solbiati J., Cronan J.E. Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli. J. Biol. Chem. 2000, 275:28593-28598.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28593-28598
-
-
Davis, M.S.1
Solbiati, J.2
Cronan, J.E.3
-
7
-
-
80051941601
-
Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals
-
Dellomonaco C., Clomburg J.M., Miller E.N., Gonzalez R. Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals. Nature 2011, 476:355-359.
-
(2011)
Nature
, vol.476
, pp. 355-359
-
-
Dellomonaco, C.1
Clomburg, J.M.2
Miller, E.N.3
Gonzalez, R.4
-
8
-
-
82955240582
-
Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: investigation of kinetics and requirement for an external electron donor
-
Eser B.E., Das D., Han J., Jones P.R., Marsh E.N.G. Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: investigation of kinetics and requirement for an external electron donor. Biochemistry. 2011, 50:10743-10750.
-
(2011)
Biochemistry.
, vol.50
, pp. 10743-10750
-
-
Eser, B.E.1
Das, D.2
Han, J.3
Jones, P.R.4
Marsh, E.N.G.5
-
9
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist A.M., Henry C.S., Reed J.L., Krummenacker M., Joyce A.R., Karp P.D., Broadbelt L.J., Hatzimanikatis V., Palsson B.O. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol. 2007, 3.
-
(2007)
Mol. Syst. Biol.
, pp. 3
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
10
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
Feist A.M., Palsson B.O. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat. Biotechnol. 2008, 26:659-667.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
11
-
-
84856528019
-
Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway
-
Gulevich A.Y., Skorokhodova A.Y., Sukhozhenko A.V., Shakulov R.S., Debabov V.G. Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid beta-oxidation pathway. Biotechnol. Lett. 2012, 34:463-469.
-
(2012)
Biotechnol. Lett.
, vol.34
, pp. 463-469
-
-
Gulevich, A.Y.1
Skorokhodova, A.Y.2
Sukhozhenko, A.V.3
Shakulov, R.S.4
Debabov, V.G.5
-
12
-
-
0033511647
-
How are free fatty acids transported in membranes? Is it by proteins or by free diffusion through the lipids?
-
Hamilton J.A., Kamp F. How are free fatty acids transported in membranes? Is it by proteins or by free diffusion through the lipids?. Diabetes 1999, 48:2255-2269.
-
(1999)
Diabetes
, vol.48
, pp. 2255-2269
-
-
Hamilton, J.A.1
Kamp, F.2
-
13
-
-
78650570829
-
Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals
-
Handke P., Lynch S.A., Gill R.T. Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals. Metab. Eng. 2011, 13:28-37.
-
(2011)
Metab. Eng.
, vol.13
, pp. 28-37
-
-
Handke, P.1
Lynch, S.A.2
Gill, R.T.3
-
14
-
-
84878068069
-
Chapter 3.6.2: Nucleotides, nucleosides and nucleobases
-
ASM, Washington, DC, J. Ingraham (Ed.)
-
Jensen K.F., Dandanell G., Hove-Jensen B., Willemoes M. Chapter 3.6.2: Nucleotides, nucleosides and nucleobases. Ecosal-Escherichia coli and Salmonella; Cellular and Molecular Biology 2008, ASM, Washington, DC. J. Ingraham (Ed.).
-
(2008)
Ecosal-Escherichia coli and Salmonella; Cellular and Molecular Biology
-
-
Jensen, K.F.1
Dandanell, G.2
Hove-Jensen, B.3
Willemoes, M.4
-
15
-
-
0029842086
-
Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate
-
Kasimoglu E., Park S.J., Malek J., Tseng C.P., Gunsalus R.P. Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate. J. Bacteriol. 1996, 178:5563-5567.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5563-5567
-
-
Kasimoglu, E.1
Park, S.J.2
Malek, J.3
Tseng, C.P.4
Gunsalus, R.P.5
-
16
-
-
79954995511
-
Conversion of fatty aldehydes to alka(e)nes and formate by a cyanobacterial aldehyde decarbonylase: cryptic redox by an unusual dimetal oxygenase
-
Li N., Norgaard H., Warui D.M., Booker S.J., Krebs C., Bollinger J.M. Conversion of fatty aldehydes to alka(e)nes and formate by a cyanobacterial aldehyde decarbonylase: cryptic redox by an unusual dimetal oxygenase. J. Am. Chem. Soc. 2011, 133:6158-6161.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 6158-6161
-
-
Li, N.1
Norgaard, H.2
Warui, D.M.3
Booker, S.J.4
Krebs, C.5
Bollinger, J.M.6
-
17
-
-
80054069179
-
A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011
-
Orth J.D., Conrad T.M., Na J., Lerman J.A., Nam H., Feist A.M., Palsson B.O. A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011. Mol. Syst. Biol. 2011, 7.
-
(2011)
Mol. Syst. Biol.
, pp. 7
-
-
Orth, J.D.1
Conrad, T.M.2
Na, J.3
Lerman, J.A.4
Nam, H.5
Feist, A.M.6
Palsson, B.O.7
-
19
-
-
84869027982
-
An integrated computational and experimental study for overproducing fatty acids in Escherichia coli
-
Ranganathan S., Tee T.W., Chowdhury A., Zomorrodi A.R., Yoon J.M., Fu Y., Shanks J.V., Maranas C.D. An integrated computational and experimental study for overproducing fatty acids in Escherichia coli. Metab. Eng. 2012, 14:687-704.
-
(2012)
Metab. Eng.
, vol.14
, pp. 687-704
-
-
Ranganathan, S.1
Tee, T.W.2
Chowdhury, A.3
Zomorrodi, A.R.4
Yoon, J.M.5
Fu, Y.6
Shanks, J.V.7
Maranas, C.D.8
-
21
-
-
1342325419
-
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
-
Sauer U., Canonaco F., Heri S., Perrenoud A., Fischer E. The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J. Biol. Chem. 2004, 279:6613-6619.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6613-6619
-
-
Sauer, U.1
Canonaco, F.2
Heri, S.3
Perrenoud, A.4
Fischer, E.5
-
22
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
-
Schellenberger J., Que R., Fleming R.M.T., Thiele I., Orth J.D., Feist A.M., Zielinski D.C., Bordbar A., Lewis N.E., Rahmanian S., Kang J., Hyduke D.R., Palsson B.O. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat. Protoc. 2011, 6:1290-1307.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.T.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
Kang, J.11
Hyduke, D.R.12
Palsson, B.O.13
-
23
-
-
77955118014
-
Microbial biosynthesis of alkanes
-
Schirmer A., Rude M.A., Li X., Popova E., del Cardayre S.B. Microbial biosynthesis of alkanes. Science 2010, 329:559-562.
-
(2010)
Science
, vol.329
, pp. 559-562
-
-
Schirmer, A.1
Rude, M.A.2
Li, X.3
Popova, E.4
del Cardayre, S.B.5
-
24
-
-
0347125234
-
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins
-
Serres M.H., Goswami S., Riley M. GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins. Nucleic Acids Res. 2004, 32.
-
(2004)
Nucleic Acids Res.
, pp. 32
-
-
Serres, M.H.1
Goswami, S.2
Riley, M.3
-
25
-
-
54349114978
-
Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways
-
Shen C.R., Liao J.C. Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways. Metab. Eng. 2008, 10:312-320.
-
(2008)
Metab. Eng.
, vol.10
, pp. 312-320
-
-
Shen, C.R.1
Liao, J.C.2
-
26
-
-
79957477156
-
A synthetic iterative pathway for ketoacid elongation
-
Shen C.R., Liao J.C. A synthetic iterative pathway for ketoacid elongation. Methods Enzymol. 2011, 497:469-481.
-
(2011)
Methods Enzymol.
, vol.497
, pp. 469-481
-
-
Shen, C.R.1
Liao, J.C.2
-
27
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
Steen E.J., Kang Y.S., Bokinsky G., Hu Z.H., Schirmer A., McClure A., del Cardayre S.B., Keasling J.D. Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 2010, 463:559-562.
-
(2010)
Nature
, vol.463
, pp. 559-562
-
-
Steen, E.J.1
Kang, Y.S.2
Bokinsky, G.3
Hu, Z.H.4
Schirmer, A.5
McClure, A.6
del Cardayre, S.B.7
Keasling, J.D.8
-
28
-
-
84879960190
-
Tailored fatty acid synthesis via dynamic control of fatty acid elongation
-
Torella J.P., Ford T.J., Kim S.N., Chen A.M., Way J.C., Silver P.A. Tailored fatty acid synthesis via dynamic control of fatty acid elongation. Proc. Natl. Acad. Sci. USA 2013, 110:11290-11295.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 11290-11295
-
-
Torella, J.P.1
Ford, T.J.2
Kim, S.N.3
Chen, A.M.4
Way, J.C.5
Silver, P.A.6
-
29
-
-
0015239525
-
Pyruvate-ferredoxin oxidoreductase: purification and properites of enzyme
-
Uyeda K., Rabinowi.J. Pyruvate-ferredoxin oxidoreductase: purification and properites of enzyme. J. Biol. Chem. 1971, 246:3111-3119.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 3111-3119
-
-
Uyeda, K.1
Rabinowi, J.2
-
30
-
-
84877804801
-
Modular optimization of multi-gene pathways for fatty acids production in E. coli
-
Xu P., Gu Q., Wang W., Wong L., Bower A.G., Collins C.H., Koffas M.A. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 2013, 4:1409.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1409
-
-
Xu, P.1
Gu, Q.2
Wang, W.3
Wong, L.4
Bower, A.G.5
Collins, C.H.6
Koffas, M.A.7
-
31
-
-
58549111802
-
Expanding metabolism for biosynthesis of nonnatural alcohols
-
Zhang K.C., Sawaya M.R., Eisenberg D.S., Liao J.C. Expanding metabolism for biosynthesis of nonnatural alcohols. Proc. Natl. Acad. Sci. USA 2008, 105:20653-20658.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 20653-20658
-
-
Zhang, K.C.1
Sawaya, M.R.2
Eisenberg, D.S.3
Liao, J.C.4
-
32
-
-
77950580812
-
Fermentation of glycerol to succinate by metabolically engineered strains of Escherichia coli
-
Zhang X., Shanmugam K.T., Ingram L.O. Fermentation of glycerol to succinate by metabolically engineered strains of Escherichia coli. Appl. Environ. Microbiol. 2010, 76:2397-2401.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2397-2401
-
-
Zhang, X.1
Shanmugam, K.T.2
Ingram, L.O.3
|