-
1
-
-
1842456940
-
Cyanobacterial circadian clocks-timing is everything
-
Golden SS, Canales SR (2003) Cyanobacterial circadian clocks-timing is everything. Nat Rev Microbiol 1(3):191-199
-
(2003)
Nat Rev Microbiol
, vol.1
, Issue.3
, pp. 191-199
-
-
Golden, S.S.1
Canales, S.R.2
-
2
-
-
0035969453
-
The Neurospora circadian clock: Simple or complex?
-
Bell-Pedersen D, Crosthwaite SK, Lakin-Thomas PL, Martha M, Okland M (2001) The Neurospora circadian clock: simple or complex? Phil Trans Roy Soc Lond B Biol Sci 356 (1415):1697-1709
-
(2001)
Phil Trans Roy Soc Lond B Biol Sci
, vol.356
, Issue.1415
, pp. 1697-1709
-
-
Bell-Pedersen, D.1
Crosthwaite, S.K.2
Lakin-Thomas, P.L.3
Martha, M.4
Okland, M.5
-
3
-
-
76649139821
-
A circadian clock in Saccharomyces cerevisiae
-
Eelderink-Chen Z, Mazzotta G, Sturre M, Bosman J, Roenneberg T, Merrow M (2010) A circadian clock in Saccharomyces cerevisiae. PNAS 107(5):2043-2047
-
(2010)
PNAS
, vol.107
, Issue.5
, pp. 2043-2047
-
-
Eelderink-Chen, Z.1
Mazzotta, G.2
Sturre, M.3
Bosman, J.4
Roenneberg, T.5
Merrow, M.6
-
4
-
-
77951912759
-
Circadian organization of behavior and physiology in Drosophila
-
Allada R, Chung BY (2010) Circadian organization of behavior and physiology in Drosophila. Ann Rev Physiol 72(1):605-624
-
(2010)
Ann Rev Physiol
, vol.72
, Issue.1
, pp. 605-624
-
-
Allada, R.1
Chung, B.Y.2
-
5
-
-
33745456764
-
Plant circadian rhythms
-
Robertson McClung C (2006) Plant circadian rhythms. Plant Cell 18(4):792-803
-
(2006)
Plant Cell
, vol.18
, Issue.4
, pp. 792-803
-
-
Robertson McClung, C.1
-
6
-
-
84862675384
-
Central and peripheral circadian clocks in mammals
-
Mohawk JA, Green CB, Takahashi JS (2012) Central and peripheral circadian clocks in mammals. Ann Rev Neurosci 35(1):445-462
-
(2012)
Ann Rev Neurosci
, vol.35
, Issue.1
, pp. 445-462
-
-
Mohawk, J.A.1
Green, C.B.2
Takahashi, J.S.3
-
7
-
-
21344470923
-
Circadian rhythms from multiple oscillators: Lessons from diverse organisms
-
Bell-Pedersen D, Cassone VM, Earnest DJ, Golden SS, Hardin PE, Thomas TL, Zoran MJ (2005) Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet 6(7):544-556
-
(2005)
Nat Rev Genet
, vol.6
, Issue.7
, pp. 544-556
-
-
Bell-Pedersen, D.1
Cassone, V.M.2
Earnest, D.J.3
Golden, S.S.4
Hardin, P.E.5
Thomas, T.L.6
Zoran, M.J.7
-
8
-
-
84858172824
-
(Re)inventing the circadian feedback loop
-
Brown SA, Kowalska E, Dallmann R (2012) (Re)inventing the circadian feedback loop. Dev Cell 22(3):477-487
-
(2012)
Dev Cell
, vol.22
, Issue.3
, pp. 477-487
-
-
Brown, S.A.1
Kowalska, E.2
Dallmann, R.3
-
9
-
-
78650995766
-
Spotlight on post-transcriptional control in the circadian system
-
Staiger D, Köster T (2010) Spotlight on post-transcriptional control in the circadian system. Cell Mol Life Sci 68(1):71-83
-
(2010)
Cell Mol Life Sci
, vol.68
, Issue.1
, pp. 71-83
-
-
Staiger, D.1
Köster, T.2
-
10
-
-
12244296161
-
No transcription-translation feedback in circadian rhythm of KaiC phosphorylation
-
Tomita J, Nakajima M, Kondo T, Iwasaki H (2005) No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science 307(5707):251-254
-
(2005)
Science
, vol.307
, Issue.5707
, pp. 251-254
-
-
Tomita, J.1
Nakajima, M.2
Kondo, T.3
Iwasaki, H.4
-
11
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima M, Imai K, Ito H, Nishiwaki T, Murayama Y, Iwasaki H, Oyama T, Kondo T (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308(5720):414-415
-
(2005)
Science
, vol.308
, Issue.5720
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
12
-
-
0001115654
-
On the significance of transients in daily rhythms
-
Pittendrigh C, Bruce V, Kaus P (1958) On the significance of transients in daily rhythms. PNAS 44(9):965-973
-
(1958)
PNAS
, vol.44
, Issue.9
, pp. 965-973
-
-
Pittendrigh, C.1
Bruce, V.2
Kaus, P.3
-
13
-
-
0023082730
-
Human sleep and circadian rhythms: A simple model based on two coupled oscillators
-
Strogatz SH (1987) Human sleep and circadian rhythms: a simple model based on two coupled oscillators. J Math Biol 25(3):327-347
-
(1987)
J Math Biol
, vol.25
, Issue.3
, pp. 327-347
-
-
Strogatz, S.H.1
-
14
-
-
0026267705
-
The amplitude of circadian oscillations: Temperature dependence, latitudinal clines, and the photoperiodic time measurement
-
Pittendrigh C, Kyner WT, Takamura T (1991) The amplitude of circadian oscillations: temperature dependence, latitudinal clines, and the photoperiodic time measurement. J Biol Rhythms 6(4):299-313
-
(1991)
J Biol Rhythms
, vol.6
, Issue.4
, pp. 299-313
-
-
Pittendrigh, C.1
Kyner, W.T.2
Takamura, T.3
-
16
-
-
80052643441
-
Circadian desynchronization
-
Granada AE, Cambras T, Díez-Noguera A, Herzel H (2011) Circadian desynchronization. Interface Focus 1(1):153-166
-
(2011)
Interface Focus
, vol.1
, Issue.1
, pp. 153-166
-
-
Granada, A.E.1
Cambras, T.2
Díez-Noguera, A.3
Herzel, H.4
-
17
-
-
80051849863
-
Modeling two-oscillator circadian systems entrained by two environmental cycles
-
Oda GA, Otto Friesen W (2011) Modeling two-oscillator circadian systems entrained by two environmental cycles. PLoS ONE 6(8): e23895
-
(2011)
Plos ONE
, vol.6
, Issue.8
-
-
Oda, G.A.1
Otto Friesen, W.2
-
18
-
-
0031990984
-
A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins
-
Leloup J-C, Goldbeter A (1998) A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins. J Biol Rhythms 13(1): 70-87
-
(1998)
J Biol Rhythms
, vol.13
, Issue.1
, pp. 70-87
-
-
Leloup, J.-C.1
Goldbeter, A.2
-
19
-
-
0033375755
-
Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora
-
Leloup J-C, Gonze D, Goldbeter A (1999) Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora. J Biol Rhythms 14(6):433-448
-
(1999)
J Biol Rhythms
, vol.14
, Issue.6
, pp. 433-448
-
-
Leloup, J.-C.1
Gonze, D.2
Goldbeter, A.3
-
20
-
-
33748441404
-
A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression
-
Kurosawa G, Aihara K, Iwasa Y (2006) A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression. Biophys J 91(6):2015-2023
-
(2006)
Biophys J
, vol.91
, Issue.6
, pp. 2015-2023
-
-
Kurosawa, G.1
Aihara, K.2
Iwasa, Y.3
-
21
-
-
0037795575
-
Toward a detailed computational model for the mammalian circadian clock
-
Leloup J-C, Goldbeter A (2003) Toward a detailed computational model for the mammalian circadian clock. PNAS 100(12): 7051-7056
-
(2003)
PNAS
, vol.100
, Issue.12
, pp. 7051-7056
-
-
Leloup, J.-C.1
Goldbeter, A.2
-
22
-
-
0344736694
-
A detailed predictive model of the mammalian circadian clock
-
Forger DB, Peskin CS (2003) A detailed predictive model of the mammalian circadian clock. PNAS 100(25):14806-14811
-
(2003)
PNAS
, vol.100
, Issue.25
, pp. 14806-14811
-
-
Forger, D.B.1
Peskin, C.S.2
-
23
-
-
15244359622
-
Modelling genetic networks with noisy and varied experimental data: The circadian clock in Arabidopsis thaliana
-
Locke JCW, Millar AJ, Turner MS (2005) Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol 234(3): 383-393
-
(2005)
J Theor Biol
, vol.234
, Issue.3
, pp. 383-393
-
-
Locke, J.1
Millar, A.J.2
Turner, M.S.3
-
24
-
-
29544448913
-
(2005) Extension of a genetic network model by iterative experimentation and mathematical analysis
-
Locke JCW, Southern MM, Kozma-Bognar L, V Hibberd, Brown PE, Turner MS, Millar AJ (2005) Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol Syst Biol 1:2005.0013
-
(2005)
Mol Syst Biol
, vol.1
-
-
Locke, J.1
Southern, M.M.2
Kozma-Bognar, L.3
Hibberd, V.4
Brown, P.E.5
Turner, M.S.6
Millar, A.J.7
-
25
-
-
33846050368
-
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana
-
Locke JCW, Kozma-Bognar L, Gould PD, Feher B, Kevei E, Nagy F, Turner MS, Hall A, Millar AJ (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Mol Syst Biol 2:59
-
(2006)
Mol Syst Biol
, vol.2
-
-
Locke, J.1
Kozma-Bognar, L.2
Gould, P.D.3
Feher, B.4
Kevei, E.5
Nagy, F.6
Turner, M.S.7
Hall, A.8
Millar, A.J.9
-
26
-
-
33846085492
-
A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9
-
Zeilinger MN, Farre EM, Taylor SR, Kay SA, Doyle FJ (2006) A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol Syst Biol 2:58
-
(2006)
Mol Syst Biol
, vol.2
-
-
Zeilinger, M.N.1
Farre, E.M.2
Taylor, S.R.3
Kay, S.A.4
Doyle, F.J.5
-
27
-
-
77957260103
-
Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model
-
Pokhilko A, Hodge SK, Stratford K, Knox K, Edwards KD, Thomson AW, Mizuno T, Millar AJ (2010) Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Mol Syst Biol 6:416
-
(2010)
Mol Syst Biol
, vol.6
-
-
Pokhilko, A.1
Hodge, S.K.2
Stratford, K.3
Knox, K.4
Edwards, K.D.5
Thomson, A.W.6
Mizuno, T.7
Millar, A.J.8
-
28
-
-
84857952188
-
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
-
Pokhilko A, Piñas Fernández A, Edwards KD, Southern MM, Halliday KJ, Millar AJ (2012) The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Mol Syst Biol 8:574(1)
-
(2012)
Mol Syst Biol
, vol.8
, Issue.1
-
-
Pokhilko, A.1
Piñas Fernández, A.2
Edwards, K.D.3
Southern, M.M.4
Halliday, K.J.5
Millar, A.J.6
-
29
-
-
84875068918
-
Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs
-
Pokhilko A, Mas P, Millar AJ (2013) Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs. BMC Syst Biol 7(1):23
-
(2013)
BMC Syst Biol
, vol.7
, Issue.1
-
-
Pokhilko, A.1
Mas, P.2
Millar, A.J.3
-
30
-
-
78650712177
-
A robust two-gene oscillator at the core of Ostreococcus tauri circadian clock
-
Morant P-E, Thommen Q, Pfeuty B, Vandermoere C, Corellou F, Bouget F-Y, Lefranc M (2010) A robust two-gene oscillator at the core of Ostreococcus tauri circadian clock. Chaos 20(4):045108
-
(2010)
Chaos
, vol.20
, Issue.4
-
-
Morant, P.-E.1
Thommen, Q.2
Pfeuty, B.3
Vandermoere, C.4
Corellou, F.5
Bouget, F.-Y.6
Lefranc, M.7
-
31
-
-
0037154231
-
Robustness of circadian rhythms with respect to molecular noise
-
Gonze D, Halloy J, Goldbeter A (2002) Robustness of circadian rhythms with respect to molecular noise. PNAS 99(2):673-678
-
(2002)
PNAS
, vol.99
, Issue.2
, pp. 673-678
-
-
Gonze, D.1
Halloy, J.2
Goldbeter, A.3
-
32
-
-
0012599475
-
Stochastic models for circadian rhythms: Effect of molecular noise on periodic and chaotic behaviour
-
Gonze D, Halloy J, Leloup J-C, Goldbeter A (2003) Stochastic models for circadian rhythms: effect of molecular noise on periodic and chaotic behaviour. Cr Biologies 326(2):189-203
-
(2003)
Cr Biologies
, vol.326
, Issue.2
, pp. 189-203
-
-
Gonze, D.1
Halloy, J.2
Leloup, J.-C.3
Goldbeter, A.4
-
33
-
-
12244269952
-
Stochastic simulation of the mammalian circadian clock
-
Forger DB, Peskin CS (2005) Stochastic simulation of the mammalian circadian clock. PNAS 102(2):321-324
-
(2005)
PNAS
, vol.102
, Issue.2
, pp. 321-324
-
-
Forger, D.B.1
Peskin, C.S.2
-
34
-
-
81155136392
-
Stochastic properties of the plant circadian clock
-
Guerriero ML, Pokhilko A, Piñas Fernández A, Halliday KJ, Millar AJ, Hillston J (2012) Stochastic properties of the plant circadian clock. J R Soc Interface 9(69):744-756
-
(2012)
J R Soc Interface
, vol.9
, Issue.69
, pp. 744-756
-
-
Guerriero, M.L.1
Pokhilko, A.2
Piñas Fernández, A.3
Halliday, K.J.4
Millar, A.J.5
Hillston, J.6
-
35
-
-
27144450537
-
SYSTEMS BIOLOGY: Less is more in modeling large genetic networks
-
Bornholdt S (2005) SYSTEMS BIOLOGY: less is more in modeling large genetic networks. Science 310(5747):449-451
-
(2005)
Science
, vol.310
, Issue.5747
, pp. 449-451
-
-
Bornholdt, S.1
-
36
-
-
84866181814
-
Digital clocks: Simple boolean models can quantitatively describe circadian systems
-
Akman OE, Watterson S, Parton A, Binns N, Millar AJ, Ghazal P (2012) Digital clocks: simple boolean models can quantitatively describe circadian systems. J R Soc Interface 9(74): 2365-2382
-
(2012)
J R Soc Interface
, vol.9
, Issue.74
, pp. 2365-2382
-
-
Akman, O.E.1
Watterson, S.2
Parton, A.3
Binns, N.4
Millar, A.J.5
Ghazal, P.6
-
37
-
-
84859508042
-
Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator
-
Huang W, Pérez-García P, Pokhilko A, Millar AJ, Antoshechkin I, Riechmann JL, Mas P (2012) Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science 336(6077):75-79
-
(2012)
Science
, vol.336
, Issue.6077
, pp. 75-79
-
-
Huang, W.1
Pérez-García, P.2
Pokhilko, A.3
Millar, A.J.4
Antoshechkin, I.5
Riechmann, J.L.6
Mas, P.7
-
38
-
-
33746436302
-
An introduction to systems biology: Design principles of biological circuits. Chapman & Hall/CRC
-
Taylor & Francis Group, Boca Raton
-
Alon U (2007) An introduction to systems biology: design principles of biological circuits. Chapman & Hall/CRC, Mathematical and Computational Biology series, Taylor & Francis Group, Boca Raton
-
(2007)
Mathematical and Computational Biology Series
-
-
Alon, U.1
-
39
-
-
0013823048
-
Oscillatory behavior in enzymatic control processes
-
Goodwin BC (1965) Oscillatory behavior in enzymatic control processes. Adv Enzyme Regul 3:425-437
-
(1965)
Adv Enzyme Regul
, vol.3
, pp. 425-437
-
-
Goodwin, B.C.1
-
40
-
-
0014319313
-
Mathematics of cellular control processes I. Negative feedback to one gene
-
Griffith JS (1968) Mathematics of cellular control processes I. Negative feedback to one gene. J Theor Biol 20(2):202-208
-
(1968)
J Theor Biol
, vol.20
, Issue.2
, pp. 202-208
-
-
Griffith, J.S.1
-
41
-
-
70350055193
-
Circadian clocks and phosphorylation: Insights from computational modeling
-
Leloup J-C (2009) Circadian clocks and phosphorylation: insights from computational modeling. Cent Eur J Biol 4(3):290-303
-
(2009)
Cent Eur J Biol
, vol.4
, Issue.3
, pp. 290-303
-
-
Leloup, J.-C.1
-
42
-
-
85035221677
-
Statistical mechanical approaches to models with many poorly known parameters
-
Brown KS, Sethna JP (2003) Statistical mechanical approaches to models with many poorly known parameters. Phys Rev E 68(2): 021904
-
(2003)
Phys Rev E
, vol.68
, Issue.2
-
-
Brown, K.S.1
Sethna, J.P.2
-
43
-
-
43949096772
-
Simulating, analyzing, and animating dynamical systems: A guide to XPPAUT for researchers and students
-
Philadelphia
-
Ermentrout B (2002) Simulating, analyzing, and animating dynamical systems: a guide to XPPAUT for researchers and students. SIAM 2002, Philadelphia
-
(2002)
SIAM 2002
-
-
Ermentrout, B.1
-
44
-
-
0001755071
-
AUTO, a program for the automatic bifurcation analysis of autonomous systems
-
Doedel EJ (1981) AUTO, a program for the automatic bifurcation analysis of autonomous systems. Cong Numer 30:265-384
-
(1981)
Cong Numer
, vol.30
, pp. 265-384
-
-
Doedel, E.J.1
-
45
-
-
0003487030
-
-
Technical Report, Concordia University
-
Doedel EJ, Champneys AR, Fairgrieve TF, Kuznetsov YA, Sandstede B, Wang X (1997) AUTO97: continuation and bifurcation software for ordinary differential equations (with HomCont). Technical Report, Concordia University
-
(1997)
AUTO97: Continuation and Bifurcation Software for Ordinary Differential Equations (With Homcont)
-
-
Doedel, E.J.1
Champneys, A.R.2
Fairgrieve, T.F.3
Kuznetsov, Y.A.4
Sandstede, B.5
Wang, X.6
-
46
-
-
0038194270
-
-
Technical Report, Concordia University
-
Doedel EJ, Paffenroth RC, Champneys AR, Fairgrieve TF, Kuznetsov YA, Oldeman BE, Sandstede B, Wang X (2002) AUTO 2000: continuation and bifurcation software for ordinary differential equations (with HomCont). Technical Report, Concordia University
-
(2002)
AUTO 2000: Continuation and Bifurcation Software for Ordinary Differential Equations (With Homcont)
-
-
Doedel, E.J.1
Paffenroth, R.C.2
Champneys, A.R.3
Fairgrieve, T.F.4
Kuznetsov, Y.A.5
Oldeman, B.E.6
Sandstede, B.7
Wang, X.8
-
47
-
-
84860689846
-
-
Nowacki J (2011) XPPy, URL: https:/?github.com/jsnowacki/xppy
-
(2011)
XPPy
-
-
Nowacki, J.1
-
48
-
-
34247493236
-
Matplotlib: A 2D Graphics Environment
-
Hunter JD (2007) Matplotlib: A 2D Graphics Environment. Comput Sci Eng 9(3):90-95, URL: http://matplotlib.org
-
(2007)
Comput Sci Eng
, vol.9
, Issue.3
, pp. 90-95
-
-
Hunter, J.D.1
-
49
-
-
0036834175
-
Photoreceptors in Arabidopsis thaliana: Light perception, signal transduction and entrainment of the endogenous clock
-
Fankhauser C, Staiger D (2002) Photoreceptors in Arabidopsis thaliana: light perception, signal transduction and entrainment of the endogenous clock. Planta 216(1):1-16
-
(2002)
Planta
, vol.216
, Issue.1
, pp. 1-16
-
-
Fankhauser, C.1
Staiger, D.2
-
50
-
-
1642564006
-
Input signals to the plant circadian clock
-
Millar AJ (2004) Input signals to the plant circadian clock. J Exp Bot 55:277-283
-
(2004)
J Exp Bot
, vol.55
, pp. 277-283
-
-
Millar, A.J.1
-
51
-
-
80052274696
-
Modeling circadian clocks: Roles, advantages, and limitations
-
Gonze D (2011) Modeling circadian clocks: roles, advantages, and limitations. Cent Eur J Biol 6(5):712-729
-
(2011)
Cent Eur J Biol
, vol.6
, Issue.5
, pp. 712-729
-
-
Gonze, D.1
-
52
-
-
80052281434
-
Modeling circadian clocks: From equations to oscillations
-
Gonze D (2011) Modeling circadian clocks: from equations to oscillations. Cent Eur J Biol 6(5):699-711
-
(2011)
Cent Eur J Biol
, vol.6
, Issue.5
, pp. 699-711
-
-
Gonze, D.1
-
53
-
-
77957266390
-
Quantitative analysis of regulatory flexibility under changing environmental conditions
-
Edwards KD, Akman OE, Knox K, Lumsden PJ, Thomson AW, Brown PE, Pokhilko A, Kozma-Bognar L, Nagy F, Rand DA, Millar AJ (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Mol Sys Biol 6:424
-
(2010)
Mol Sys Biol
, vol.6
-
-
Edwards, K.D.1
Akman, O.E.2
Knox, K.3
Lumsden, P.J.4
Thomson, A.W.5
Brown, P.E.6
Pokhilko, A.7
Kozma-Bognar, L.8
Nagy, F.9
Rand, D.A.10
Millar, A.J.11
-
54
-
-
0034688220
-
Biological rhythms: Circadian clocks limited by noise
-
Barkai N, Leibler S (2000) Biological rhythms: circadian clocks limited by noise. Nature 403 (6767):267-268
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
55
-
-
25444468618
-
Noise in gene expression: Origins, consequences, and control
-
Raser JM, O’Shea EK (2005) Noise in gene expression: origins, consequences, and control. Science 309(5743):2010-2013
-
(2005)
Science
, vol.309
, Issue.5743
, pp. 2010-2013
-
-
Raser, J.M.1
O’Shea, E.K.2
-
56
-
-
33745683391
-
Noise in genetic and neural networks
-
Swain PS, Longtin A (2006) Noise in genetic and neural networks. Chaos 16(2):026101
-
(2006)
Chaos 16(2)
, vol.26101
-
-
Swain, P.S.1
Longtin, A.2
-
57
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81(25):2340-2361
-
(1977)
J Phys Chem
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
58
-
-
2342508415
-
Effects of stochasticity in models of the cell cycle: From quantized cycle times to noise-induced oscillations
-
Steuer R (2004) Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations. J Theor Biol 228(3):293-301
-
(2004)
J Theor Biol
, vol.228
, Issue.3
, pp. 293-301
-
-
Steuer, R.1
-
59
-
-
84907095419
-
R: A language and environment for statistical computing
-
Vienna, Austria, 2012. ISBN 3-900051-07-0
-
R Core Team (2012) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2012. ISBN 3-900051-07-0
-
(2012)
R Foundation for Statistical Computing
-
-
-
60
-
-
0036100299
-
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis
-
Mizoguchi T, Wheatley K, Hanzawa Y, Wright L, Mizoguchi M, Song H-R, Carré IA, Coupland G (2002) LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev Cell 2(5):629-641
-
(2002)
Dev Cell
, vol.2
, Issue.5
, pp. 629-641
-
-
Mizoguchi, T.1
Wheatley, K.2
Hanzawa, Y.3
Wright, L.4
Mizoguchi, M.5
Song, H.-R.6
Carré, I.A.7
Coupland, G.8
-
61
-
-
0030465411
-
Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis
-
Millar AJ, Kay SA (1996) Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. PNAS 93(26):15491-15496
-
(1996)
PNAS
, vol.93
, Issue.26
, pp. 15491-15496
-
-
Millar, A.J.1
Kay, S.A.2
-
62
-
-
84857383458
-
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor
-
Gendron JM, Pruneda-Paz JL, Doherty CJ, Gross AM, Earl Kang S, Kay SA (2012) Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. PNAS 109(8):3167-3172
-
(2012)
PNAS
, vol.109
, Issue.8
, pp. 3167-3172
-
-
Gendron, J.M.1
Pruneda-Paz, J.L.2
Doherty, C.J.3
Gross, A.M.4
Earl Kang, S.5
Kay, S.A.6
-
63
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403(6767):335-338
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
64
-
-
84875974859
-
A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana
-
Schmal C, Reimann P, Staiger D (2013) A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana. PLoS Comput Biol 9(3): e1002986
-
(2013)
Plos Comput Biol
, vol.9
, Issue.3
-
-
Schmal, C.1
Reimann, P.2
Staiger, D.3
-
65
-
-
71449120958
-
Prediction of photoperiodic regulators from quantitative gene circuit models
-
Salazar JD, Saithong T, Brown PE, Foreman J, Locke JCW, Halliday KJ, Carré IA, Rand DA, Millar AJ (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell 139(6):1170-1179
-
(2009)
Cell
, vol.139
, Issue.6
, pp. 1170-1179
-
-
Salazar, J.D.1
Saithong, T.2
Brown, P.E.3
Foreman, J.4
Locke, J.5
Halliday, K.J.6
Carré, I.A.7
Rand, D.A.8
Millar, A.J.9
-
66
-
-
77955639359
-
Correct biological timing in Arabidopsis requires multiple light-signaling pathways
-
Dalchau N, Hubbard KE, Robertson FC, Hotta CT, Briggs HM, Stan G-B, Gonçalves JM, Webb AAR (2010) Correct biological timing in Arabidopsis requires multiple light-signaling pathways. PNAS 107(29): 13171-13176
-
(2010)
PNAS
, vol.107
, Issue.29
, pp. 13171-13176
-
-
Dalchau, N.1
Hubbard, K.E.2
Robertson, F.C.3
Hotta, C.T.4
Briggs, H.M.5
Stan, G.-B.6
Gonçalves, J.M.7
Webb, A.8
-
67
-
-
77954616673
-
Early transcriptomic changes induced by magnesium deficiency in Arabidopsis thaliana reveal the alteration of circadian clock gene expression in roots and the triggering of abscisic acid-responsive genes
-
Hermans C, Vuylsteke M, Coppens F, Craciun A, Inzé D, Verbruggen N (2010) Early transcriptomic changes induced by magnesium deficiency in Arabidopsis thaliana reveal the alteration of circadian clock gene expression in roots and the triggering of abscisic acid-responsive genes. New Phytologist 187(1): 119-131
-
(2010)
New Phytologist
, vol.187
, Issue.1
, pp. 119-131
-
-
Hermans, C.1
Vuylsteke, M.2
Coppens, F.3
Craciun, A.4
Inzé, D.5
Verbruggen, N.6
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