메뉴 건너뛰기




Volumn 9, Issue 2, 2015, Pages 412-424

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; BACTERIA (MICROORGANISMS); LOBARIA PULMONARIA;

EID: 84921565810     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.138     Document Type: Article
Times cited : (214)

References (56)
  • 3
    • 84879784593 scopus 로고    scopus 로고
    • Oxidoreductases and cellulases in lichens: Possible roles in lichen biology and soil organic matter turnover
    • Beckett RP, Zavarzina AG, Liers C. (2013). Oxidoreductases and cellulases in lichens: possible roles in lichen biology and soil organic matter turnover. Fungal Biol 117: 431-438.
    • (2013) Fungal Biol , vol.117 , pp. 431-438
    • Beckett, R.P.1    Zavarzina, A.G.2    Liers, C.3
  • 4
    • 68349112649 scopus 로고    scopus 로고
    • Plant-microbe interactions promoting plant growth and health: Perspectives for controlled use of microorganisms in agriculture
    • Berg G. (2009). Plant-microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture. Appl Microbiol Biotechnol 84: 11-18.
    • (2009) Appl Microbiol Biotechnol , vol.84 , pp. 11-18
    • Berg, G.1
  • 5
    • 0036306048 scopus 로고    scopus 로고
    • Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated fro m different verticillium host plants
    • Berg G, Roskot N, Steidle A, Eberl L, Zock A, Smalla K. (2002). Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated fro m different Verticillium host plants. Appl Environ Microbiol 68: 3328-3338.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3328-3338
    • Berg, G.1    Roskot, N.2    Steidle, A.3    Eberl, L.4    Zock, A.5    Smalla, K.6
  • 6
    • 25844458962 scopus 로고    scopus 로고
    • Lichens-A promising source of bioactive secondary metabolites
    • Boustie J, Grube M. (2005). Lichens-A promising source of bioactive secondary metabolites. Plant Gen Res 3: 273-287.
    • (2005) Plant Gen Res , vol.3 , pp. 273-287
    • Boustie, J.1    Grube, M.2
  • 7
    • 84885399060 scopus 로고    scopus 로고
    • Insights into functional bacterial diversity and its effects on alpine bog ecosystem functioning
    • Bragina A, Berg C, Müller H, Moser D, Berg G. (2013). Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning. Sci Rep 3: 1995.
    • (2013) Sci Rep , vol.3
    • Bragina, A.1    Berg, C.2    Müller, H.3    Moser, D.4    Berg, G.5
  • 8
    • 51649111505 scopus 로고    scopus 로고
    • In situ analysis of the bacteria community associated with the reindeer lichen cladonia arbuscula reveals predominance of alphaproteobacteria
    • Cardinale M,Müller H,Berg G,de Castro Jr JV,Grube M. 2008 In situ analysis of the bacteria community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol Ecol 66, 63-71.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 63-71
    • Cardinale, M.1    Müller, H.2    Berg, G.3    De Castro, J.V.4    Grube, M.5
  • 10
    • 84858700155 scopus 로고    scopus 로고
    • Bacterial taxa associated with the lung lichen lobaria pulmonaria are differentially shaped by geography and habitat
    • Cardinale M, Grube M, de Cas tro Jr JV, Müller H, Berg G. (2012b). Bacterial taxa associated with the lung lichen Lobaria pulmonaria are differentially shaped by geography and habitat. FEMS Microb Lett 329: 111-115.
    • (2012) FEMS Microb Lett , vol.329 , pp. 111-115
    • Cardinale, M.1    Grube, M.2    De Castro, J.V.3    Müller, H.4    Berg, G.5
  • 11
    • 84858439578 scopus 로고    scopus 로고
    • The human microbiome: At the interface of health and disease
    • Cho I, Blaser MJ. (2012). The human microbiome: at the interface of health and disease. Nat Rev Gen 13: 260-270.
    • (2012) Nat Rev Gen , vol.13 , pp. 260-270
    • Cho, I.1    Blaser, M.J.2
  • 12
    • 84872144233 scopus 로고    scopus 로고
    • New morphological aspects of cephalodium formation in the lichen lobaria pulmonaria (lecanorales, ascomycota
    • Cornejo C, Scheidegger C. (2013). New morphological aspects of cephalodium formation in the lichen Lobaria pulmonaria (Lecanorales, Ascomycota). Lichenologist 45: 77-87.
    • (2013) Lichenologist , vol.45 , pp. 77-87
    • Cornejo, C.1    Scheidegger, C.2
  • 13
    • 27744591716 scopus 로고    scopus 로고
    • Algae acquire vitamin b12 through a symbiotic relationship with bacteria
    • Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG. (2005). Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature 438: 90-93.
    • (2005) Nature , vol.438 , pp. 90-93
    • Croft, M.T.1    Lawrence, A.D.2    Raux-Deery, E.3    Warren, M.J.4    Smith, A.G.5
  • 14
    • 78649725843 scopus 로고    scopus 로고
    • Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomyc orrhizal fungus laccaria bicolor s238n and the helper bacterium pseudomonas fluorescens bbc6r8
    • Deveau A, BruléC, Palin B, Champmartin D, Rubini P, Garbaye J et al. (2010). Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomyc orrhizal fungus Laccaria bicolor S238N and the helper bacterium Pseudomonas fluorescens BBc6R8. Environ Microbiol Rep 4: 560-568.
    • (2010) Environ Microbiol Rep , vol.4 , pp. 560-568
    • Deveau, A.1    Brulé, C.2    Palin, B.3    Champmartin, D.4    Rubini, P.5    Garbaye, J.6
  • 15
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profile hmm searches
    • Eddy SR. (2011). Accelerated profile HMM searches. PLoS Comput Biol 7: e1002195.
    • (2011) PLoS Comput Biol , vol.7 , pp. e1002195
    • Eddy, S.R.1
  • 16
    • 0007502757 scopus 로고
    • Über die biologischen verhältnisse des thallus einiger krustenflechten
    • Frank AB. (1877). Über die biologischen Verhältnisse des Thallus einiger Krustenflechten. Beitr Biol Pflanzen 2: 123-200.
    • (1877) Beitr Biol Pflanzen , vol.2 , pp. 123-200
    • Frank, A.B.1
  • 17
    • 34548405265 scopus 로고    scopus 로고
    • The mycorrhiza helper bacteria revisited
    • Frey-Klett P, Garbaye J, Tarkka M. (2007). The mycorrhiza helper bacteria revisited. New Phytol 176: 22-36.
    • (2007) New Phytol , vol.176 , pp. 22-36
    • Frey-Klett, P.1    Garbaye, J.2    Tarkka, M.3
  • 18
    • 36148972811 scopus 로고    scopus 로고
    • Trouble with lichen: The re-evaluation and re-interpretation of thallus form and fruit body types in the molecular era
    • Grube M, Hawksworth DL. (2007). Trouble with lichen: the re-evaluation and re-interpretation of thallus form and fruit body types in the molecular era. Mycol Res 111: 1-1132.
    • (2007) Mycol Res , vol.111 , pp. 1-1132
    • Grube, M.1    Hawksworth, D.L.2
  • 19
    • 70349446753 scopus 로고    scopus 로고
    • Species-specific structural and functional diversity of bacterial communities in lichen symbioses
    • Grube M, Cardinale M, Vieira de Castro J, Müller H, Berg G. (2009). Species-specific structural and functional diversity of bacterial communities in lichen symbioses. ISME J 3: 1105-1115.
    • (2009) ISME J , vol.3 , pp. 1105-1115
    • Grube, M.1    Cardinale, M.2    Vieira De Castro, J.3    Müller, H.4    Berg, G.5
  • 20
    • 84867714464 scopus 로고    scopus 로고
    • Host-parasite interaction and microbiome response: Effects of fungal infections on the bacterial community of the alpine lichen solorina crocea
    • Grube M, Köberl M, Lackner S, Berg C, Berg G. (2012). Host-parasite interaction and microbiome response: effects of fungal infections on the bacterial community of the Alpine lichen Solorina crocea. FEMS Microbiol Ecol 82: 472-481.
    • (2012) FEMS Microbiol Ecol , vol.82 , pp. 472-481
    • Grube, M.1    Köberl, M.2    Lackner, S.3    Berg, C.4    Berg, G.5
  • 21
    • 84901008603 scopus 로고    scopus 로고
    • Phytohormone signaling in arbuscular mycorhiza development
    • Gutjahr C. (2014). Phytohormone signaling in arbuscular mycorhiza development. Curr Opin Plant Biol 21: 26-34.
    • (2014) Curr Opin Plant Biol , vol.21 , pp. 26-34
    • Gutjahr, C.1
  • 22
    • 67651240650 scopus 로고    scopus 로고
    • Quantification of key genes steering the microbial nitrogen cycle in the rhizospher e of sorghum cultivars in tropical agroecosystems
    • Hai B, Diallo NH, Sall S, Haesler F, Schauss K, Bonzi M et al. (2009). Quantification of key genes steering the microbial nitrogen cycle in the rhizospher e of sorghum cultivars in tropical agroecosystems. Appl Environ Microbiol 75: 4993-5000.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4993-5000
    • Hai, B.1    Diallo, N.H.2    Sall, S.3    Haesler, F.4    Schauss, K.5    Bonzi, M.6
  • 24
    • 84855289236 scopus 로고    scopus 로고
    • Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial com munities in the lichen microbiome
    • Hodkinson BP, Gottel NR, Schadt CW, Lutzoni F. (2011). Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial com munities in the lichen microbiome. Environ Microbiol 14: 147-161.
    • (2011) Environ Microbiol , vol.14 , pp. 147-161
    • Hodkinson, B.P.1    Gottel, N.R.2    Schadt, C.W.3    Lutzoni, F.4
  • 25
    • 85030981732 scopus 로고    scopus 로고
    • The symbiotic phenotype of lichenforming ascomycetes and their endo-And epibionts
    • In Hock B (ed.) Springer: Berlin
    • Honegger R. (2012). The symbiotic phenotype of lichenforming Ascomycetes and their endo-And epibionts. In: Hock B (ed.) The Mycota IX. Springer: Berlin, pp 287-339.
    • (2012) The Mycota , vol.9 , pp. 287-339
    • Honegger, R.1
  • 26
    • 84870218969 scopus 로고    scopus 로고
    • The earliest records of internally stratified cyanobacterial and algal lichens from the lower devonian of the welsh borderland
    • Honegger R, Edwards D, Axe L. (2013). The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland. New Phytol 197: 264-275.
    • (2013) New Phytol , vol.197 , pp. 264-275
    • Honegger, R.1    Edwards, D.2    Axe, L.3
  • 28
    • 0036745295 scopus 로고    scopus 로고
    • Cyanobacterial lichen symbiosis: The fungal partner as an optimal harvester
    • Hyvärinen M, Härdling R, Tuomi J. (2002). Cyanobacterial lichen symbiosis: the fungal partner as an optimal harvester. Oikos 98: 498-502.
    • (2002) Oikos , vol.98 , pp. 498-502
    • Hyvärinen, M.1    Härdling, R.2    Tuomi, J.3
  • 29
    • 84867900793 scopus 로고    scopus 로고
    • Characterization of a transcriptome from a non-model organism, cladonia rangiferina, the grey reindeer lichen, using highthroughput next generation sequencing and est sequence data
    • Juntilla S,Rudd S. 2012 Characterization of a transcriptome from a non-model organism, Cladonia rangiferina, the grey reindeer lichen, using highthroughput next generation sequencing and EST sequence data BMC Genomics 13: 575.
    • (2012) BMC Genomics , vol.13 , pp. 575
    • Juntilla, S.1    Rudd, S.2
  • 30
    • 84889814050 scopus 로고    scopus 로고
    • Whole transcriptome characterization of the effects of dehydration and rehydration on cladonia rangiferina, the grey reindeer lichen
    • Junttila S, Laiho A, Gyenesei A, Rudd S. (2013). Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen. BMC Genomics 14: 870.
    • (2013) BMC Genomics , vol.14 , pp. 870
    • Junttila, S.1    Laiho, A.2    Gyenesei, A.3    Rudd, S.4
  • 31
  • 33
    • 37049054125 scopus 로고
    • Selection of media for isolation of streptomycetes
    • Kuester E, Will iams ST. (1964). Selection of media for isolation of Streptomycetes. Nature 202: 928-929.
    • (1964) Nature , vol.202 , pp. 928-929
    • Kuester, E.1    Williams, S.T.2
  • 34
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage t4
    • Laemmli UK. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 35
    • 33750040822 scopus 로고    scopus 로고
    • Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones
    • Liba CM, Ferrara FIS, Mangio GP, Fantinatti-Garboggini F, Albuquerque RC, Pavan C et al. (2006). Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones. J Appl Microbiol 101: 1076-1086.
    • (2006) J Appl Microbiol , vol.101 , pp. 1076-1086
    • Liba, C.M.1    Ferrara, F.I.S.2    Mangio, G.P.3    Fantinatti-Garboggini, F.4    Albuquerque, R.C.5    Pavan, C.6
  • 37
    • 84881262398 scopus 로고    scopus 로고
    • Current usage of symbiosis and associated terminology
    • Martin BD, Schwab E. (2013). Current usage of symbiosis and associated terminology. Int J Biol 5: 32-45.
    • (2013) Int J Biol , vol.5 , pp. 32-45
    • Martin, B.D.1    Schwab, E.2
  • 38
    • 0031467411 scopus 로고    scopus 로고
    • Quorum sensing and chromobacterium violaceum: Exploitation of violacein production and inhibition for the detection of n-Acylhomoserine lactones
    • McClean KH, W inson MK, Fish L, Taylor A, Chhabra SR, Camara M et al. (1997). Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-Acylhomoserine lactones. Microbiolog y 143: 3703-3711.
    • (1997) Microbiology , vol.143 , pp. 3703-3711
    • McClean, K.H.1    Inson, M.K.W.2    Fish, L.3    Taylor, A.4    Chhabra, S.R.5    Camara, M.6
  • 39
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics rast server-A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M et al. (2008). The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 40
    • 0034752567 scopus 로고    scopus 로고
    • High rates of extracellular superoxide production in bryophytes and lichens, and an oxidative burst in response to rehydration followin g desiccation
    • Minibayeva F, Beckett RP. (2001). High rates of extracellular superoxide production in bryophytes and lichens, and an oxidative burst in response to rehydration followin g desiccation. New Phytol 152: 333-343.
    • (2001) New Phytol , vol.152 , pp. 333-343
    • Minibayeva, F.1    Beckett, R.P.2
  • 42
    • 0004228523 scopus 로고    scopus 로고
    • 2nd edn. Cambridge University Press Cambridge, UK
    • Nash III TH. (2008). Lichen Biology, 2nd edn. Cambridge University Press: Cambridge, UK.
    • (2008) Lichen Biology
    • Nash, T.H.1
  • 43
    • 0032932907 scopus 로고    scopus 로고
    • An efficient microbiological growth medium for screening phosphate solubilizing microorganisms
    • Nautiyal CS. (1999). An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiol Lett 170: 265-270.
    • (1999) FEMS Microbiol Lett , vol.170 , pp. 265-270
    • Nautiyal, C.S.1
  • 44
    • 0023931883 scopus 로고
    • Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using coomassie brilliant blue g-250 and r-250
    • Neuhoff V, Arold N, Taube D, Ehrhardt W. (1988). Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9: 255-262.
    • (1988) Electrophoresis , vol.9 , pp. 255-262
    • Neuhoff, V.1    Arold, N.2    Taube, D.3    Ehrhardt, W.4
  • 45
    • 35148829378 scopus 로고    scopus 로고
    • Investigations of the structure and function of bacterial communities associated with sphag num mosses
    • Opelt K, Chobot V, Hadacek F, Schönmann S, Eberl L, Berg G. (2007). Investigations of the structure and function of bacterial communities associated with Sphag num mosses. Environ Microbiol 9: 2795-2809.
    • (2007) Environ Microbiol , vol.9 , pp. 2795-2809
    • Opelt, K.1    Chobot, V.2    Hadacek, F.3    Schönmann, S.4    Eberl, L.5    Berg, G.6
  • 48
    • 76749104150 scopus 로고    scopus 로고
    • Conservation strategies for lichens: Insights from population biology
    • Scheidegger C,Werth S. (2009). Conservation strategies for lichens: insights from population biology. Fungal Biol Rev 23: 55-66.
    • (2009) Fungal Biol Rev , vol.23 , pp. 55-66
    • Scheidegger, C.1    Werth, S.2
  • 49
    • 79959744012 scopus 로고    scopus 로고
    • Structure and function of the symbiosis partners of the lung lichen (lobaria pulmonaria l. Hoffm.) analyzed by metaproteomics
    • Schneider T, Schmid E, de Castro Jr JV, Cardinale M, Eberl L, Grube M et al. (2011). Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics 11: 2752-2756.
    • (2011) Proteomics , vol.11 , pp. 2752-2756
    • Schneider, T.1    Schmid, E.2    De Castro, J.V.3    Cardinale, M.4    Eberl, L.5    Grube, M.6
  • 50
    • 0001023407 scopus 로고
    • Methods for characterization of streptomyces species
    • Shirling EB, Gottlieb D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16: 313-340.
    • (1966) Int J Syst Bacteriol , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 51
    • 18044400555 scopus 로고    scopus 로고
    • Visualization of n-Acylhomoserine lactone-mediated cell-cell communica tion between bacteria colonizing the tomato rhizosphere
    • Steidle A, Sigl K, Schuhegger R, Ihring A, Schmid M, Gantner S et al. (2001). Visualization of N-Acylhomoserine lactone-mediated cell-cell communica tion between bacteria colonizing the tomato rhizosphere. Appl Environ Microbiol 67: 5761-5770.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5761-5770
    • Steidle, A.1    Sigl, K.2    Schuhegger, R.3    Ihring, A.4    Schmid, M.5    Gantner, S.6
  • 52
    • 33745966233 scopus 로고    scopus 로고
    • A universal and rapid protocol for protein extraction from re calcitrant plant tissues for proteomic analysis
    • Wang W, Vignani R, Scali M, Cresti M. (2006). A universal and rapid protocol for protein extraction from re calcitrant plant tissues for proteomic analysis. Electrophoresis 27: 2782-2786.
    • (2006) Electrophoresis , vol.27 , pp. 2782-2786
    • Wang, W.1    Vignani, R.2    Scali, M.3    Cresti, M.4
  • 53
    • 84892459760 scopus 로고    scopus 로고
    • Genome characteristics reveal the impact of lichen ization on lichen-forming fungus endocarpon pusillum hedwig (verrucariales, ascomycota
    • Wang YY,Liu B,Zhang XY,Zhou QM,Zhang T,Li H,et al. 2014 Genome characteristics reveal the impact of lichen ization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota BMC Genomics 15 34.
    • (2014) BMC Genomics , vol.15 , pp. 34
    • Wang, Y.Y.1    Liu, B.2    Zhang, X.Y.3    Zhou, Q.M.4    Zhang, T.5    Li, H.6
  • 54
    • 84868200794 scopus 로고    scopus 로고
    • A proposed mechanism for nitrogen acquisition by grass seedlings through oxidation of symbiotic bacteria
    • White Jr JF, Crawford H, Torres MS, Mattera R, Irizarry I, Bergen M. (2012). A proposed mechanism for nitrogen acquisition by grass seedlings through oxidation of symbiotic bacteria. Symbiosis 57: 161-171.
    • (2012) Symbiosis , vol.57 , pp. 161-171
    • White, J.F.1    Crawford, H.2    Torres, M.S.3    Mattera, R.4    Irizarry, I.5    Bergen, M.6
  • 55
    • 43149115851 scopus 로고    scopus 로고
    • Algorithms for de novo short read assembly using de bruijn graphs
    • Zerbino DR, Velvet BE. (2008). Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Velvet, B.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.