-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 : 3389 3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R Stahl DA (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56 : 1919 1925.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 : 143 169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
34548482943
-
Novel alphaproteobacterial root nodule symbiont associated with Lupinus texensis
-
Andam CP Parker MA (2007) Novel alphaproteobacterial root nodule symbiont associated with Lupinus texensis. Appl Environ Microbiol 73 : 5687 5691.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5687-5691
-
-
Andam, C.P.1
Parker, M.A.2
-
5
-
-
0033754096
-
Phylogenetic characterisation and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad. ectomycorrhizal mycelium
-
Barbieri E, Potenza L, Rossi I, Sisti D, Giomaro G, Rossetti S, Beimfohr C Stocchi V (2000) Phylogenetic characterisation and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad. ectomycorrhizal mycelium. Appl Environ Microbiol 66 : 5035 5042.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5035-5042
-
-
Barbieri, E.1
Potenza, L.2
Rossi, I.3
Sisti, D.4
Giomaro, G.5
Rossetti, S.6
Beimfohr, C.7
Stocchi, V.8
-
6
-
-
0036946865
-
The genus Caedibacter comprises endosymbionts of Paramecium spp. related to the Rickettsiales (Alphaproteobacteria) and to Francisella tularensis (Gammaproteobacteria)
-
Beier CL, Horn M, Michel R, Schweikert M, Görtz HD Wagner M (2002) The genus Caedibacter comprises endosymbionts of Paramecium spp. related to the Rickettsiales (Alphaproteobacteria) and to Francisella tularensis (Gammaproteobacteria). Appl Environ Microbiol 68 : 6043 6050.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 6043-6050
-
-
Beier, C.L.1
Horn, M.2
Michel, R.3
Schweikert, M.4
Görtz, H.D.5
Wagner, M.6
-
7
-
-
0038492525
-
In situ identification of intracellular bacteria related to Paenibacillus sp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N
-
Bertaux J, Schmid M, Chemidlin Prevost-Boure N, Churin JL, Hartmann A, Garbaye J Frey-Klett P (2003) In situ identification of intracellular bacteria related to Paenibacillus sp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Appl Environ Microbiol 69 : 4243 4248.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4243-4248
-
-
Bertaux, J.1
Schmid, M.2
Chemidlin Prevost-Boure, N.3
Churin, J.L.4
Hartmann, A.5
Garbaye, J.6
Frey-Klett, P.7
-
8
-
-
27444446457
-
Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N
-
Bertaux J, Schmid M, Hutzler P, Hartmann A, Garbaye J Frey-Klett P (2005) Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Environ Microbiol 7 : 1786 1795.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1786-1795
-
-
Bertaux, J.1
Schmid, M.2
Hutzler, P.3
Hartmann, A.4
Garbaye, J.5
Frey-Klett, P.6
-
9
-
-
0033775628
-
Detection and identification of bacterial endosymbionts in arbuscular mycorrhizal fungi belonging to Gigasporaceae
-
Bianciotto V, Lumini E, Lanfranco L, Minerdi D, Bonfante P Perotto S (2000) Detection and identification of bacterial endosymbionts in arbuscular mycorrhizal fungi belonging to Gigasporaceae. Appl Environ Microbiol 66 : 4503 4509.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4503-4509
-
-
Bianciotto, V.1
Lumini, E.2
Lanfranco, L.3
Minerdi, D.4
Bonfante, P.5
Perotto, S.6
-
10
-
-
26844559602
-
Phylum- and class-specific PCR primers for general microbial community analysis
-
Blackwood CB, Adam O Buyer JS (2005) Phylum- and class-specific PCR primers for general microbial community analysis. Appl Environ Microbiol 71 : 6193 6198.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6193-6198
-
-
Blackwood, C.B.1
Adam, O.2
Buyer, J.S.3
-
11
-
-
25844458962
-
Lichens-a promising source of bioactive secondary metabolites
-
Boustie J Grube M (2005) Lichens-a promising source of bioactive secondary metabolites. Pl Gen Res 3 : 273 287.
-
(2005)
Pl Gen Res
, vol.3
, pp. 273-287
-
-
Boustie, J.1
Grube, M.2
-
12
-
-
0003072996
-
Thallus morphology and anatomy
-
Nash, T.H.III., ed), pp. Cambridge University, Press, Cambridge, UK.
-
Büdel B Scheidegger C (1996) Thallus morphology and anatomy. Lichen Biology (Nash TH III., ed), pp. 37 51. Cambridge University, Press, Cambridge, UK.
-
(1996)
Lichen Biology
, pp. 37-51
-
-
Büdel, B.1
Scheidegger, C.2
-
13
-
-
33746895154
-
Molecular analysis of lichen-associated bacterial communities
-
Cardinale M, Puglia AM Grube M (2006) Molecular analysis of lichen-associated bacterial communities. FEMS Microbiol Ecol 57 : 484 495.
-
(2006)
FEMS Microbiol Ecol
, vol.57
, pp. 484-495
-
-
Cardinale, M.1
Puglia, A.M.2
Grube, M.3
-
14
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
-
Daims H, Brühl A, Amann R, Schleifer KH Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22 : 434 444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
15
-
-
0024507744
-
Phylogenetic strains: Ribosomal RNA-based probes for the identification of single microbial cells
-
DeLong EF, Wickham GS Stahl DA (1989) Phylogenetic strains: ribosomal RNA-based probes for the identification of single microbial cells. Science 243 : 1360 1363.
-
(1989)
Science
, vol.243
, pp. 1360-1363
-
-
Delong, E.F.1
Wickham, G.S.2
Stahl, D.A.3
-
16
-
-
33644658335
-
Ecology of endolithic lichens colonizing granite in continental Antarctica
-
De los Ríos A, Wierzchos J, Sancho LG, Green A Ascaso C (2005) Ecology of endolithic lichens colonizing granite in continental Antarctica. Lichenologist 37 : 383 395.
-
(2005)
Lichenologist
, vol.37
, pp. 383-395
-
-
De Los Ríos, A.1
Wierzchos, J.2
Sancho, L.G.3
Green, A.4
Ascaso, C.5
-
17
-
-
0030839001
-
Development and use of fluorescent in situ hybridization probes for the detection and identification of Microthrix parvicella in activated sludge
-
Erhart RD, Bradford RJ, Seviour R, Amann RI Blackall LL (1997) Development and use of fluorescent in situ hybridization probes for the detection and identification of Microthrix parvicella in activated sludge. Syst Appl Microbiol 20 : 310 318.
-
(1997)
Syst Appl Microbiol
, vol.20
, pp. 310-318
-
-
Erhart, R.D.1
Bradford, R.J.2
Seviour, R.3
Amann, R.I.4
Blackall, L.L.5
-
18
-
-
34547403219
-
Bacteria of the genus Asaia stably associate with Anopheles stephensi, an Asian malarial mosquito vector
-
Favia G, Ricci I, Damiani C et al 2007) Bacteria of the genus Asaia stably associate with Anopheles stephensi, an Asian malarial mosquito vector. Proc Natl Acad Sci USA 104 : 9047 9051.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 9047-9051
-
-
Favia, G.1
Ricci, I.2
Damiani, C.3
Al, E.4
-
19
-
-
26244450606
-
Actinomycetes isolated from lichens: Evaluation of their diversity and detection of biosynthetic gene sequences
-
Gonzáles I, Ayuso-Sacido A, Anderson A Genilloud O (2005) Actinomycetes isolated from lichens: evaluation of their diversity and detection of biosynthetic gene sequences. FEMS Microbiol Ecol 54 : 401 415.
-
(2005)
FEMS Microbiol Ecol
, vol.54
, pp. 401-415
-
-
Gonzáles, I.1
Ayuso-Sacido, A.2
Anderson, A.3
Genilloud, O.4
-
20
-
-
0034775485
-
Observations in Biatoropsis usnearum and other gall forming lichenicolous fungi using different microscopic techniques
-
Grube M de los Rios A (2001) Observations in Biatoropsis usnearum and other gall forming lichenicolous fungi using different microscopic techniques. Mycol Res 105 : 1116 1122.
-
(2001)
Mycol Res
, vol.105
, pp. 1116-1122
-
-
Grube, M.1
De Los Rios, A.2
-
21
-
-
0033980096
-
Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients
-
Hogardt M, Trebesius K, Geiger AM, Hornef M, Rosenecker J Heesemann J (2000) Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. J Clin Microbiol 38 : 818 825.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 818-825
-
-
Hogardt, M.1
Trebesius, K.2
Geiger, A.M.3
Hornef, M.4
Rosenecker, J.5
Heesemann, J.6
-
22
-
-
51649104958
-
Nocardioides exalbidus sp. nov., a novel actinomycete isolated from lichen in Izu-Oshima Island, Japan
-
Li B, Xie CH Yokota A (2007) Nocardioides exalbidus sp. nov., a novel actinomycete isolated from lichen in Izu-Oshima Island, Japan. Actinomycetologica 1 : 22 26.
-
(2007)
Actinomycetologica
, vol.1
, pp. 22-26
-
-
Li, B.1
Xie, C.H.2
Yokota, A.3
-
23
-
-
33750040822
-
Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones
-
Liba CM, Ferrara FIS, Manfio GP, Fantinatti-Garboggini F, Albuquerque RC, Pavan C, Ramos PL, Moreira-Filho CA Barbosa HR (2006) Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones. J Appl Microbiol 101 : 1076 1086.
-
(2006)
J Appl Microbiol
, vol.101
, pp. 1076-1086
-
-
Liba, C.M.1
Ferrara, F.I.S.2
Manfio, G.P.3
Fantinatti-Garboggini, F.4
Albuquerque, R.C.5
Pavan, C.6
Ramos, P.L.7
Moreira-Filho, C.A.8
Barbosa, H.R.9
-
24
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
Manz W, Amann R, Ludwig W, Wagner M Schleifer KH (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15 : 593 600.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.H.5
-
25
-
-
0033066743
-
Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content
-
Meier H, Amann R, Ludwig W Schleifer KH (1999) Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst Appl Microbiol 22 : 186 196.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 186-196
-
-
Meier, H.1
Amann, R.2
Ludwig, W.3
Schleifer, K.H.4
-
26
-
-
0001006761
-
Ultrastructure of the lichen Coenogonium interplexum Nyl
-
Meier JL Chapman RL (1983) Ultrastructure of the lichen Coenogonium interplexum Nyl. Am J Bot 70 : 400 407.
-
(1983)
Am J Bot
, vol.70
, pp. 400-407
-
-
Meier, J.L.1
Chapman, R.L.2
-
27
-
-
51649114543
-
-
Anwendung der In Situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. PhD thesis, Technische Universität, München.
-
Neef A (1997) Anwendung der In Situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. PhD thesis, Technische Universität, München.
-
(1997)
-
-
Neef, A.1
-
28
-
-
8744256693
-
Diversity and antagonistic potential of bacteria associated with bryophytes from nutrient-poor habitats of the Baltic Sea Coast
-
Opelt K Berg G (2004) Diversity and antagonistic potential of bacteria associated with bryophytes from nutrient-poor habitats of the Baltic Sea Coast. Appl Environ Microbiol 70 : 6569 6579.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6569-6579
-
-
Opelt, K.1
Berg, G.2
-
29
-
-
27144465524
-
Pathogenic fungus harbours endosymbiotic bacteria for toxin production
-
Partida-Martinez L Hertweck C (2005) Pathogenic fungus harbours endosymbiotic bacteria for toxin production. Nature 437 : 884 888.
-
(2005)
Nature
, vol.437
, pp. 884-888
-
-
Partida-Martinez, L.1
Hertweck, C.2
-
30
-
-
0031764376
-
A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
-
Schwieger F Tebbe CC (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64 : 4870 4876.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4870-4876
-
-
Schwieger, F.1
Tebbe, C.C.2
-
31
-
-
85010134033
-
Chemical and ultrastructural features of the lichen-volcanic/sedimentary rock interface in a semiarid region (Almerιa, Spain)
-
Souza-Egipsy V, Wierzchos J, Garcia-Ramos JV Ascaso C (2002) Chemical and ultrastructural features of the lichen-volcanic/sedimentary rock interface in a semiarid region (Almerιa, Spain). Lichenologist 34 : 155 167.
-
(2002)
Lichenologist
, vol.34
, pp. 155-167
-
-
Souza-Egipsy, V.1
Wierzchos, J.2
Garcia-Ramos, J.V.3
Ascaso, C.4
-
32
-
-
0003341851
-
Development and application of nucleic acid probes
-
Stackebrandt, E. Goodfellow, M., eds), pp. John Wiley & Sons Ltd, Chichester.
-
Stahl DA Amann R (1991) Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E Goodfellow M, eds), pp. 205 248. John Wiley & Sons Ltd, Chichester.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
-
33
-
-
34547775666
-
Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
-
Stingl U, Harry J, Tripp HJ, Stephen J Giovannoni SJ (2007) Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J 1 : 361 371.
-
(2007)
ISME J
, vol.1
, pp. 361-371
-
-
Stingl, U.1
Harry, J.2
Tripp, H.J.3
Stephen, J.4
Giovannoni, S.J.5
-
34
-
-
0038265129
-
Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes
-
Wagner M, Horn M Daims H (2003) Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes. Curr Opin Microbiol 6 : 302 309.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 302-309
-
-
Wagner, M.1
Horn, M.2
Daims, H.3
-
35
-
-
0027339723
-
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
Wallner G, Amann R Beisker W (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 : 136 143.
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
36
-
-
0029859948
-
Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
-
Zheng D, Alm EW, Stahl DA Raskin L (1996) Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol 62 : 4504 4513.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4504-4513
-
-
Zheng, D.1
Alm, E.W.2
Stahl, D.A.3
Raskin, L.4
|