-
2
-
-
70449346295
-
Environmental science Peatland response to global change
-
Dise, N. B. Environmental science. Peatland response to global change. Science 326, 810-811 (2009).
-
(2009)
Science
, vol.326
, pp. 810-811
-
-
Dise, N.B.1
-
3
-
-
84865186665
-
Cultivating uncultured bacteria from northern wetlands: Knowledge gained and remaining gaps
-
Dedysh, S. N. Cultivating uncultured bacteria from northern wetlands: knowledge gained and remaining gaps. Front. Microbio. 2, 184, doi: 10.3389/fmicb.2011. 00184 (2011).
-
(2011)
Front. Microbio
, vol.2
, pp. 184
-
-
Dedysh, S.N.1
-
4
-
-
24144437435
-
Methanotrophic symbionts provide carbon for photosynthesis in peat bogs
-
Raghoebarsing, A. A. et al. Methanotrophic symbionts provide carbon for photosynthesis in peat bogs. Nature 436, 1153-1156 (2005).
-
(2005)
Nature
, vol.436
, pp. 1153-1156
-
-
Raghoebarsing, A.A.1
-
5
-
-
77955454078
-
The role of Sphagnum mosses in the methane cycling of a boreal mire
-
Larmola, T. et al. The role of Sphagnum mosses in the methane cycling of a boreal mire. Ecology 91, 2356-2365 (2010).
-
(2011)
Ecology
, vol.91
, pp. 2356-2365
-
-
Larmola, T.1
-
6
-
-
84872920243
-
Organic carbon transformations in high-Arctic peat soils: Key functions and microorganisms
-
Tveit, A., Schwacke, R., Svenning, M. M. & Urich, T. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J. 7, 299-311 (2013).
-
(2013)
ISME J
, vol.7
, pp. 299-311
-
-
Tveit, A.1
Schwacke, R.2
Svenning, M.M.3
Urich, T.4
-
7
-
-
35148829378
-
Investigations of the structure and function of bacterial communities associated with Sphagnum mosses
-
Opelt, K. et al. Investigations of the structure and function of bacterial communities associated with Sphagnum mosses. Environ. Microbiol. 9, 2795-2809 (2007a).
-
(2007)
Environ. Microbiol
, vol.9
, pp. 2795-2809
-
-
Opelt, K.1
-
9
-
-
31144467648
-
Sphagnum moss: An indicator of climate change in the sub-Antarctic
-
Whinam, J. & Copson, G. Sphagnum moss: An indicator of climate change in the sub-Antarctic. Polar Rec. 42, 43-49 (2006).
-
(2006)
Polar Rec
, vol.42
, pp. 43-49
-
-
Whinam, J.1
Copson, G.2
-
10
-
-
79952237886
-
Effect of a temperature gradient on Sphagnum fallax and its associated living microbial communities: A study under controlled conditions
-
Jassey, V. E., Gilbert, D., Binet, P., Toussaint, M. L. & Chiapusio, G. Effect of a temperature gradient on Sphagnum fallax and its associated living microbial communities: A study under controlled conditions. Can. J. Microbiol. 57, 226-235 (2011).
-
(2011)
Can. J. Microbiol
, vol.57
, pp. 226-235
-
-
Jassey, V.E.1
Gilbert, D.2
Binet, P.3
Toussaint, M.L.4
Chiapusio, G.5
-
11
-
-
34250026690
-
The bryophyte genus Sphagnum is a reservoir for powerful and extraordinary antagonists and potentially facultative human pathogens
-
Opelt, K., Berg, C. & Berg, G. The bryophyte genus Sphagnum is a reservoir for powerful and extraordinary antagonists and potentially facultative human pathogens. FEMS Microbiol. Ecol. 61, 38-53 (2007b).
-
(2007)
FEMS Microbiol. Ecol
, vol.61
, pp. 38-53
-
-
Opelt, K.1
Berg, C.2
Berg, G.3
-
12
-
-
84875800426
-
Similar diversity of Alphaproteobacteria and nitrogenase gene amplicons on two related Sphagnum mosses
-
Bragina, A. et al. Similar diversity of Alphaproteobacteria and nitrogenase gene amplicons on two related Sphagnum mosses. Front. Microbio. 2, 275, doi: 10.3389/fmicb.2011.00275 (2011).
-
(2011)
Front. Microbio
, vol.2
, Issue.275
-
-
Bragina, A.1
-
13
-
-
84858866394
-
Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle
-
Bragina, A. et al. Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle. ISME J. 6, 802-813 (2012).
-
(2012)
ISME J
, vol.6
, pp. 802-813
-
-
Bragina, A.1
-
14
-
-
61649118780
-
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
-
Berg, G. & Smalla, K. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol. Ecol. 68, 1-13 (2009).
-
(2009)
FEMS Microbiol. Ecol
, vol.68
, pp. 1-13
-
-
Berg, G.1
Smalla, K.2
-
15
-
-
84864460264
-
Revealing structure and assembly cues for Arabidopsis rootinhabiting bacterial microbiota
-
Bulgarelli, D. et al. Revealing structure and assembly cues for Arabidopsis rootinhabiting bacterial microbiota. Nature 488, 91-95 (2012).
-
(2012)
Nature
, vol.488
, pp. 91-95
-
-
Bulgarelli, D.1
-
16
-
-
0346488832
-
Taxonomic diversity of bacteria associated with roots of modern, recent and ancient wheat cultivars
-
Germida, J. & Siciliano, S. Taxonomic diversity of bacteria associated with roots of modern, recent and ancient wheat cultivars. Biol. Fert. Soils 33, 410-415 (2001).
-
(2001)
Biol. Fert. Soils
, vol.33
, pp. 410-415
-
-
Germida, J.1
Siciliano, S.2
-
17
-
-
84873281398
-
Water dispersal of methanotrophic bacteria maintains functional methane oxidation in Sphagnum mosses
-
Putkinen, A. et al. Water dispersal of methanotrophic bacteria maintains functional methane oxidation in Sphagnum mosses. Front. Microbio. 3, 15, doi: 10.3389/fmicb.2012.00015 (2012).
-
(2012)
Front. Microbio
, vol.3
, pp. 15
-
-
Putkinen, A.1
-
18
-
-
79955742866
-
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
-
Farnelid, H. et al. Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria. PLoS ONE 6, e19223, doi: 10.1371/journal.pone.0019223 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e19223
-
-
Farnelid, H.1
-
19
-
-
80052612640
-
Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from Dutch peat bog
-
Kip, N. et al. Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from Dutch peat bog. Environ. Microbiol. Rep. 3, 667-673 (2011).
-
(2011)
Environ. Microbiol. Rep
, vol.3
, pp. 667-673
-
-
Kip, N.1
-
20
-
-
80052782154
-
Potential of pmoA amplicon pyrosequencing for methanotroph diversity studies
-
Lüke, C. & Frenzel, P. Potential of pmoA amplicon pyrosequencing for methanotroph diversity studies. Appl. Environ. Microbiol. 77, 6305-6309 (2011).
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 6305-6309
-
-
Lüke, C.1
Frenzel, P.2
-
21
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P. L. & Ideker, T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27, 431-432 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
22
-
-
84855949949
-
Using network analysis to explore co-occurrence patterns in soil microbial communities
-
Barberán, A., Bates, S. T., Casamayor, E. O. & Fierer, N. Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J. 6, 343-351 (2012).
-
(2012)
ISME J
, vol.6
, pp. 343-351
-
-
Barberán, A.1
Bates, S.T.2
Casamayor, E.O.3
Fierer, N.4
-
23
-
-
33745244776
-
Abundance-based similarity indices and their estimation when there are unseen species in samples
-
Chao, A., Chazdon, R. L., Colwell, R. K. & Shen, T. J. Abundance-based similarity indices and their estimation when there are unseen species in samples. Biometrics 62, 361-371 (2006).
-
(2006)
Biometrics
, vol.62
, pp. 361-371
-
-
Chao, A.1
Chazdon, R.L.2
Colwell, R.K.3
Shen, T.J.4
-
24
-
-
79551690782
-
A holistic view on nitrogen acquisition in plants
-
Kraiser, T., Gras, D. E., Gutiérrez, A. G., González, B. & Gutiérrez, R. A. A holistic view on nitrogen acquisition in plants. J. Exp. Bot. 62, 1455-1466 (2011).
-
(2011)
J. Exp. Bot
, vol.62
, pp. 1455-1466
-
-
Kraiser, T.1
Gras, D.E.2
Gutiérrez, A.G.3
González, B.4
Gutiérrez, R.A.5
-
25
-
-
69249168791
-
Germination, field establishment patterns and nitrogen fixation of indigenous legumes on nutrientdepleted soils
-
Tauro, T. P., Nezomba,H., Mtambanengwe, F. & Mapfumo, P. Germination, field establishment patterns and nitrogen fixation of indigenous legumes on nutrientdepleted soils. Symbiosis 48, 92-101 (2009).
-
(2009)
Symbiosis
, vol.48
, pp. 92-101
-
-
Nezombah, P.T.T.1
Mtambanengwe, F.2
Mapfumo, P.3
-
27
-
-
0035461235
-
NifH sequences and nitrogen fixation in type i and type II methanotrophs
-
Auman, A. J., Speake, C. C. & Lidstrom, M. E. nifH sequences and nitrogen fixation in type I and type II methanotrophs. Appl. Environ. Microbiol. 67, 4009-4016 (2001).
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 4009-4016
-
-
Auman, A.J.1
Speake, C.C.2
Lidstrom, M.E.3
-
28
-
-
2942530573
-
NifH and NifD phylogenies: An evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria
-
Dedysh, S.N., Ricke, P. & Liesack, W. NifH and NifD phylogenies: An evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria. Microbiology 150, 1301-1313 (2004).
-
(2004)
Microbiology
, vol.150
, pp. 1301-1313
-
-
Dedysh, S.N.1
Ricke, P.2
Liesack, W.3
-
29
-
-
84864691243
-
A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase
-
Gaby, J. C. & Buckley, D. H. A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase. PLoS ONE 7, e42149, doi: 10.1371/journal.pone.0042149 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e42149
-
-
Gaby, J.C.1
Buckley, D.H.2
-
30
-
-
78751687820
-
Hydrology is reflected in functioning and community composition of methanotrophs in the littoral wetland of a boreal lake
-
Siljanen, H. M. et al. Hydrology is reflected in functioning and community composition of methanotrophs in the littoral wetland of a boreal lake. FEMS Microbiol. Ecol. 75, 430-445 (2011).
-
(2011)
FEMS Microbiol. Ecol
, vol.75
, pp. 430-445
-
-
Siljanen, H.M.1
-
31
-
-
0036151243
-
Methylocapsa acidiphila gen nov., sp nov., a novel methaneoxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog
-
Dedysh, S. N. et al. Methylocapsa acidiphila gen. nov., sp. nov., a novel methaneoxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int. J. Syst. Evol. Micr. 52, 251-261 (2002).
-
(2002)
Int. J. Syst. Evol. Micr
, vol.52
, pp. 251-261
-
-
Dedysh, S.N.1
-
32
-
-
79958276768
-
PmoA-primers for detection of anaerobic methanotrophs
-
Luesken, F. A. et al. pmoA-primers for detection of anaerobic methanotrophs. Appl. Environ. Microbiol. 77, 3877-3880 (2011).
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 3877-3880
-
-
Luesken, F.A.1
-
33
-
-
84855553838
-
Methanotrophic activity and diversity in different Sphagnum magellanicum dominated habitats in the southernmost peat bogs of Patagonia
-
Kip, N. et al. Methanotrophic activity and diversity in different Sphagnum magellanicum dominated habitats in the southernmost peat bogs of Patagonia. Biogeosciences 9, 47-55 (2012).
-
(2012)
Biogeosciences
, vol.9
, pp. 47-55
-
-
Kip, N.1
-
34
-
-
34948814596
-
High specificity but contrasting biodiversity of Sphagnum-Associated bacterial and plant communities in bog ecosystems independent of the geographical region
-
Opelt, K., Berg, C., Schönmann, S., Eberl, L. & Berg, G. High specificity but contrasting biodiversity of Sphagnum-Associated bacterial and plant communities in bog ecosystems independent of the geographical region. ISME J. 1, 502-516 (2007).
-
(2007)
ISME J
, vol.1
, pp. 502-516
-
-
Opelt, K.1
Berg, C.2
Schönmann, S.3
Eberl, L.4
Berg, G.5
-
35
-
-
77956996314
-
Soil bacterial and fungal communities across a pH gradient in an arable soil
-
Rousk, J. et al. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J. 4, 1340-1351 (2010).
-
(2011)
ISME J
, vol.4
, pp. 1340-1351
-
-
Rousk, J.1
-
36
-
-
67651240650
-
Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems
-
Hai, B. et al. Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems. Appl. Environ. Microbiol. 75, 4993-5000 (2009).
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 4993-5000
-
-
Hai, B.1
-
37
-
-
70849133417
-
Quantitative PCR of pmoA using novel reverse primer correlates with potential methane oxidation in Finnish fen
-
Tuomivirta, T. T., Yrjälä, K. & Fritze, H. Quantitative PCR of pmoA using novel reverse primer correlates with potential methane oxidation in Finnish fen. Res. Microbiol. 160, 751-756 (2009).
-
(2009)
Res. Microbiol
, vol.160
, pp. 751-756
-
-
Tuomivirta, T.T.1
Yrjälä, K.2
Fritze, H.3
-
39
-
-
0028791540
-
Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related
-
Holmes, A. J., Costello, A., Lidstrom, M. E. & Murrell, J. C. Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related. FEMS Microbiol. Lett. 132, 203-208 (1995).
-
(1995)
FEMS Microbiol. Lett
, vol.132
, pp. 203-208
-
-
Holmes, A.J.1
Costello, A.2
Lidstrom, M.E.3
Murrell, J.C.4
-
40
-
-
0035458352
-
Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils
-
Bourne, D. G.,McDonald, I. R. & Murrell, J. C. Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils. Appl. Environ. Microbiol. 67, 3802-3809 (2001).
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 3802-3809
-
-
Bourne, D.G.1
McDonald, I.R.2
Murrell, J.C.3
-
42
-
-
0034964968
-
The diversity of archaea and bacteria in association with roots of Zea mays L
-
Chelius, M. K. & Triplett, E. W. The diversity of archaea and bacteria in association with roots of Zea mays L. Microb. Ecol. 41, 252-263 (2001).
-
(2001)
Microb. Ecol
, vol.41
, pp. 252-263
-
-
Chelius, M.K.1
Triplett, E.W.2
-
43
-
-
58149200948
-
The ribosomal database project: Improved alignments and new tools for rRNA analysis
-
Cole, J. R. et al. The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141-D145 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
-
44
-
-
77952254719
-
Alignment and clustering of phylogenetic markers-implications for microbial diversity study
-
White, J. R. et al.Alignment and clustering of phylogenetic markers-implications for microbial diversity study. BMC Bioinformatics 11, 152, doi: 10.1186/1471-2105-11-152 (2010).
-
(2011)
BMC Bioinformatics
, vol.11
, pp. 152
-
-
White, J.R.1
-
45
-
-
77958542467
-
Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes
-
Will, C. et al. Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes. Appl. Environ. Microbiol. 76, 6751-6759 (2010).
-
(2011)
Appl. Environ. Microbiol
, vol.76
, pp. 6751-6759
-
-
Will, C.1
-
46
-
-
84875153705
-
SnoWMAn: High-Throughput phylotyping, analysis and comparison of microbial communities
-
Stocker, S. et al. SnoWMAn: High-Throughput phylotyping, analysis and comparison of microbial communities. Under revision (2011).
-
(2011)
Under Revision
-
-
Stocker, S.1
-
47
-
-
66249145772
-
Statistical methods for detecting deferentially abundant features in clinical metagenomic samples
-
White, J. R., Nagarajan, N. & Pop, M. Statistical methods for detecting deferentially abundant features in clinical metagenomic samples. PLoS Comput. Biol. 5, e1000352, doi: 10.1371/journal.pcbi.1000352 (2009).
-
(2009)
PLoS Comput. Biol
, vol.5
, pp. e1000352
-
-
White, J.R.1
Nagarajan, N.2
Pop, M.3
-
48
-
-
84867714464
-
Host-parasite interaction and microbiome response: Effects of fungal infections on the bacterial community of the Alpine lichen Solorina crocea
-
Grube, M., Köberl, M., Lackner, S., Berg, C. & Berg, G. Host-parasite interaction and microbiome response: effects of fungal infections on the bacterial community of the Alpine lichen Solorina crocea. FEMS Microbiol. Ecol. 82, 472-481 (2012).
-
(2012)
FEMS Microbiol. Ecol
, vol.82
, pp. 472-481
-
-
Grube, M.1
Köberl, M.2
Lackner, S.3
Berg, C.4
Berg, G.5
|