Bacterial communities associated with the lichen symbiosis

Applied and Environmental Microbiology

Volumn 77, Issue 4, 2011, Pages 1309-1314

  Bates, Scott T ^a   Cropsey, Garrett W G ^a   Caporaso, J Gregory ^a   Knight, Rob ^a,b   Fierer, Noah ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AZOSPIRILLUM; BACTERIAL COMMUNITY; INTEGRAL COMPONENTS; KNOWLEDGE GAPS; MUTUALISTIC SYMBIOSIS; PHYLOGENETIC STRUCTURES; PHYLOTYPES; PYROSEQUENCING; RHIZOBIALES; SYMBIOTIC RELATIONSHIP;

BACTERIOLOGY;

BACTERIA;

RNA 16S;

COMMUNITY STRUCTURE; CYANOBACTERIUM; DOMINANCE; FUNCTIONAL ROLE; GENETIC ANALYSIS; LICHEN; MUTUALISM; NITROGEN FIXATION; PHYLOGENETICS;

ALPHAPROTEOBACTERIA; ARCHAEBACTERIUM; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BARCODING; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LICHENS; MICROBIAL CONSORTIUM; MICROBIOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SYMBIOSIS;

ALPHAPROTEOBACTERIA; ARCHAEA; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; DNA BARCODING, TAXONOMIC; LICHENS; MICROBIAL CONSORTIA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; SYMBIOSIS;

ALGAE; ALPHAPROTEOBACTERIA; AZOSPIRILLUM; BACTERIA (MICROORGANISMS); BRADYRHIZOBIUM; CHLOROPHYTA; CYANOBACTERIA; FRANKIA; FUNGI; RHIZOBIALES;

EID: 79953201567     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02257-10     Document Type: Article

References (35)

1. Arnold, A. E., et al. 2009. A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification? Syst. Biol. 58:283-297.
2. Artursson, V., R. D. Finlay, and J. K. Jansson. 2006. Interactions between arbuscular mycorrhizal fungi and bacteria and their po tential for stimulating plant growth. Environ. Microbiol. 8:1-10.
3. Barbieri, E., et al. 2005. New evidence for bacterial diversity in the ascoma of the ectomycorrhizal fungus Tuber borchii Vittad. FEMS Microbiol. Lett. 247:23-35.
4. Bates, S. T., et al. 18 November 2010. Examining the global distribution of dominant archaeal populations in soil. ISME J. doi:10.1038/ismej.2010.171.
5. Brenner, D. J., N. R. Krieg, and J. T. Staley. 2005. Bergey's manual of systematic bacteriology, 2nd ed., vol. 2. The proteobacteria. Part C. Alpha-, beta-, delta-, and epsilonproteobacteria. Springer, New York, NY.
6. Caporaso, J. G., et al. 2010. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7:335-336.
7. Cardinale, M., et al. 2008. In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol. Ecol. 66:63-71.
8. Cardinale, M., A. M. Puglia, and M. Grube. 2006. Molecular analysis of lichen-associated bacterial communities. FEMS Microbiol. Ecol. 57:484-495.
9. Clark, K. R., and R. N. Gorley. 2006. PRIMER v6: user manual/tutorial. PRIMER-E, Plymouth, United Kingdom.
10. Elix, J. A., and E. Stocker-Wörgötten. 2008. Biochemistry and secondary metabolites, p. 104-133. In T. H. Nash III (ed.), Lichen biology, 2nd ed. Cambridge University Press, Cambridge, United Kingdom.
11. Fierer, N., M. Hamady, C. L. Lauber, and R. Knight. 2008. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc. Natl. Acad. Sci. U. S. A. 105:17994-17999.
12. Fierer, N., and R. B. Jackson. 2006. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U. S. A. 103:626-631.
13. Founoune, H., et al. 2002. Mycorrhiza helper bacteria stimulate ectomycorrhizal symbiosis of Acacia holosericea with Pisolithus alba. New Phytol. 153: 81-89.
14. González, I., A. Ayuso-Sacido, A. Anderson, and O. Genilloud. 2005. Actinomycetes isolated from lichens: evaluation of their diversity and detection of biosynthetic gene sequences. FEMS Microbiol. Ecol. 54:401-415.
15. Grube, M., and G. Berg. 2009. Microbial consortia of bacteria and fungi with focus on the lichen symbiosis. Fungal Biol. Rev. 23:72-85.
16. Grube, M., et al. 2009. Species-specific structural and functional diversity of bacterial communities in lichen symbioses. ISME J. 3:1105-1115.
17. Hodkinson, B., and F. Lutzoni. 2009. A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales. Symbiosis 49:163-180.
18. Hoffman, M. T., and A. E. Arnold. Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes. Appl. Environ. Microbiol. 76: 4063-4075.
19. Horner, D. S., R. P. Hirt, S. Kilvington, D. Lloyd, and T. M. Embley. 1996. Molecular data suggest an early acquisition of the mitochondrion endosymbiont. Proc. R. Soc. Lond. B Biol. Sci. 263:1053-1059.
20. Kuczynski, J., et al. 2010. Microbial community resemblance methods differ in their ability to detect biologically relevant patterns. Nat. Methods 7:813-819.
21. Lawrey, J. D., and P. Diederich. 2003. Lichenicolous fungi: interactions, evolution, and biodiversity. Bryologist 106:80-120.
22. Letunic, I., and P. Bork. 2007. Interactive Tree of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23:127-128.
23. Liba, C., et al. 2006. Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones. J. Appl. Microbiol. 101: 1076-1086.
24. Lim, B. L., P. Yeung, C. Cheng, and J. E. Hill. 2007. Distribution and diversity of phytate-mineralizing bacteria. ISME J. 1:321-330.
25. Liu, Z., C. Lozupone, M. Hamady, F. D. Bushman, and R. Knight. 2007. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res. 35:e120.
26. Loganathan, P., and S. Nair. 2004. Swaminathania salitolerans gen. nov., sp. nov., a salt-tolerant, nitrogen-fixing and phosphate-solubilizing bacterium from wild rice (Porteresia coarctata Tateoka). Int. J. Syst. Evol. Microbiol. 54:1185-1190.
27. Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
28. Lutzoni, F., M. Pagel, and V. Reeb. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937-940.
29. Nash, T. H., III. 2008. Nitrogen, its metabolism and potential contribution to ecosystems, p. 216-233. In Lichen biology, 2nd ed. Cambridge University Press, Cambridge, United Kingdom.
30. Silva, L., et al. 2002. Microorganisms with capacity for phosphate solubilization in Dão red wine (Portugal). Dev. Plant Soil Sci. 102:245-248.
31. Taylor, M. W., R. Radax, D. Steger, and M. Wagner. 2007. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol. Mol. Biol. Rev. 71:295-347.
32. Uphof, J. C. 1925. Purple bacteria as symbionts of a lichen. Science 61:67.
33. Valášková, V., W. de Boer, P. J. A. Klein Gunnewiek, M. Pospíšek, and P. Baldrian. 2009. Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood. ISME J. 3:1218-1221.
34. Warnecke, F., et al. 2007. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450:560-565.
35. Yuan, X., S. Xiao, and T. N. Taylor. 2005. Lichen-like symbiosis 600 million years ago. Science 308:1017-1020.