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Volumn 75, Issue 15, 2009, Pages 4993-5000

Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems

Author keywords

[No Author keywords available]

Indexed keywords

ABSOLUTE NUMBER; AGRICULTURAL MANAGEMENT PRACTICE; AGRO-ECOSYSTEMS; AMMONIA OXIDATION; AMMONIA OXIDIZING BACTERIA; ARCHAEA; BURKINA FASO; CLIMATIC CONDITIONS; DENITRIFIERS; ENVIRONMENTAL FACTORS; FERTILIZER APPLICATIONS; FLOWERING STAGE; FUNCTIONAL GENES; GEOCHEMICAL CYCLES; KEY PROCESS; LEAF DEVELOPMENT; MICROBIAL COMMUNITIES; NITROGEN CYCLES; ORGANIC FERTILIZERS; PLANT DEVELOPMENT; REAL-TIME PCR; SEMI-ARID REGION; WATER AVAILABILITY;

EID: 67651240650     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02917-08     Document Type: Article
Times cited : (140)

References (43)
  • 1
    • 51349088322 scopus 로고    scopus 로고
    • Evidence that ammonia-oxidizing archaea are more abundant than ammonia-oxidizing bacteria in semiarid soils of northern Arizona, USA
    • Adair, K., and E. Schwartz. 2008. Evidence that ammonia-oxidizing archaea are more abundant than ammonia-oxidizing bacteria in semiarid soils of northern Arizona, USA. Microb. Ecol. 56:420-426.
    • (2008) Microb. Ecol , vol.56 , pp. 420-426
    • Adair, K.1    Schwartz, E.2
  • 2
    • 0033865869 scopus 로고    scopus 로고
    • Rhizosphere soil aggregation and plant growth promotion of sunflowers by an exopolysaccharide-producing Rhizobium sp. strain isolated from sunflower roots
    • Alami, Y., W. Achouak, C. Marol, and T. Heulin. 2000. Rhizosphere soil aggregation and plant growth promotion of sunflowers by an exopolysaccharide-producing Rhizobium sp. strain isolated from sunflower roots. Appl. Environ. Microbiol. 66:3393-3398.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3393-3398
    • Alami, Y.1    Achouak, W.2    Marol, C.3    Heulin, T.4
  • 3
    • 0032794506 scopus 로고    scopus 로고
    • The effect of urea and pig slurry fertilization on denitrification, direct nitrous oxide emission, volatile fatty acids, water-soluble carbon and anthrone-reactive carbon in maize-cropped soil from the Po plain (Modena, Italy)
    • Arcara, P. G., C. Gamba, D. Bidini, and R. Marchetti. 1999. The effect of urea and pig slurry fertilization on denitrification, direct nitrous oxide emission, volatile fatty acids, water-soluble carbon and anthrone-reactive carbon in maize-cropped soil from the Po plain (Modena, Italy). Biol. Fertil. Soils 29:270-276.
    • (1999) Biol. Fertil. Soils , vol.29 , pp. 270-276
    • Arcara, P.G.1    Gamba, C.2    Bidini, D.3    Marchetti, R.4
  • 4
    • 52949087143 scopus 로고    scopus 로고
    • Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon
    • Boyle-Yarwood, S. A., P. J. Bottomley, and D. D. Myrold. 2008. Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon. Environ. Microbiol. 10:2956-2965.
    • (2008) Environ. Microbiol , vol.10 , pp. 2956-2965
    • Boyle-Yarwood, S.A.1    Bottomley, P.J.2    Myrold, D.D.3
  • 5
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker, G., A. Fesefeldt, and K.-P. Witzel. 1998. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64:3769-3775.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.-P.3
  • 6
    • 27444448084 scopus 로고    scopus 로고
    • Effects of model root exudates on structure and activity of a soil diazotroph community
    • Bürgmann, H., S. Meier, M. Bunge, F. Widmer, and J. Zeyer. 2005. Effects of model root exudates on structure and activity of a soil diazotroph community. Environ. Microbiol. 7:1711-1724.
    • (2005) Environ. Microbiol , vol.7 , pp. 1711-1724
    • Bürgmann, H.1    Meier, S.2    Bunge, M.3    Widmer, F.4    Zeyer, J.5
  • 7
    • 9144223171 scopus 로고    scopus 로고
    • Nitrate reduction and the nitrogen cycle in archaea
    • Cabello, P., M. D. Roldan, and C. Moreno-Vivian. 2004. Nitrate reduction and the nitrogen cycle in archaea. Microbiology 150:3527-3546.
    • (2004) Microbiology , vol.150 , pp. 3527-3546
    • Cabello, P.1    Roldan, M.D.2    Moreno-Vivian, C.3
  • 8
    • 35948999268 scopus 로고    scopus 로고
    • Caffrey, J. M., N. Bano, K. Kalanetra, and J. T. Hollibaugh. 2007. Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1:660-662.
    • Caffrey, J. M., N. Bano, K. Kalanetra, and J. T. Hollibaugh. 2007. Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1:660-662.
  • 9
    • 58149332207 scopus 로고    scopus 로고
    • Ammonia-oxidizing archaea: Important players in paddy rhizosphere soil?
    • Chen, X.-P., Y.-G. Zhu, Y. Xia, J.-P. Shen, and J.-Z. He. 2008. Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ. Microbiol. 10:1978-1987.
    • (2008) Environ. Microbiol , vol.10 , pp. 1978-1987
    • Chen, X.-P.1    Zhu, Y.-G.2    Xia, Y.3    Shen, J.-P.4    He, J.-Z.5
  • 10
    • 8544281141 scopus 로고
    • Application des dosages automatiques à l'analyse des sols.
    • Dabin, B. 1965. Application des dosages automatiques à l'analyse des sols. Cah. Orstom. Ser. Pedol. 3:335-366.
    • (1965) Cah. Orstom. Ser. Pedol , vol.3 , pp. 335-366
    • Dabin, B.1
  • 12
    • 67651221170 scopus 로고    scopus 로고
    • FAO. 1995. FAO fertilizer yearbook 44. Food and Agriculture Organization of the United Nations, Rome, Italy.
    • FAO. 1995. FAO fertilizer yearbook 44. Food and Agriculture Organization of the United Nations, Rome, Italy.
  • 13
    • 67651223274 scopus 로고    scopus 로고
    • FAO/UNESCO. 1994. Soil map of the world: ISRIC. Food and Agriculture Organization of the United Nations, Wageningen, The Netherlands.
    • FAO/UNESCO. 1994. Soil map of the world: ISRIC. Food and Agriculture Organization of the United Nations, Wageningen, The Netherlands.
  • 15
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths, R. I., A. S. Whiteley, A. G. O'Donnell, and M. J. Bailey. 2000. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 66:5488-5491.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 18
    • 0035144174 scopus 로고    scopus 로고
    • Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR
    • Hermansson, A., and P.-E. Lindgren. 2001. Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR. Appl. Environ. Microbiol. 67:972-976.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 972-976
    • Hermansson, A.1    Lindgren, P.-E.2
  • 20
    • 33748792525 scopus 로고    scopus 로고
    • Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
    • Kandeler, E., K. Deiglmayr, D. Tscherko, D. Bru, and L. Philippot. 2006. Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl. Environ. Microbiol. 72:5957-5962.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5957-5962
    • Kandeler, E.1    Deiglmayr, K.2    Tscherko, D.3    Bru, D.4    Philippot, L.5
  • 22
    • 0032868367 scopus 로고    scopus 로고
    • Impact of phosphorus supply on root exudation, aerenchyma formation, and methane emission of rice plants
    • Lu, Y., R. Wassmann, H. U. Neue, and C. Huang. 1999. Impact of phosphorus supply on root exudation, aerenchyma formation, and methane emission of rice plants. Biogeochemistry 47:203-218.
    • (1999) Biogeochemistry , vol.47 , pp. 203-218
    • Lu, Y.1    Wassmann, R.2    Neue, H.U.3    Huang, C.4
  • 23
    • 0025644974 scopus 로고
    • Substrate flow in the rhizosphere
    • Lynch, J. M., and J. M. Whipps. 1990. Substrate flow in the rhizosphere. Plant Soil 129:1-10.
    • (1990) Plant Soil , vol.129 , pp. 1-10
    • Lynch, J.M.1    Whipps, J.M.2
  • 25
    • 1442315585 scopus 로고    scopus 로고
    • Turnover of grain legume N rhizodeposits and effect of rhizodeposition on the turnover of crop residues
    • Mayer, J., F. Buegger, E. Jensen, M. Schloter, and J. Heß. 2004. Turnover of grain legume N rhizodeposits and effect of rhizodeposition on the turnover of crop residues. Biol. Fertil. Soils 39:153-164.
    • (2004) Biol. Fertil. Soils , vol.39 , pp. 153-164
    • Mayer, J.1    Buegger, F.2    Jensen, E.3    Schloter, M.4    Heß, J.5
  • 28
    • 14644399291 scopus 로고    scopus 로고
    • Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi
    • Milling, A., K. Smalla, F. Maidl, M. Schloter, and J. Munch. 2004. Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266:23-39.
    • (2004) Plant Soil , vol.266 , pp. 23-39
    • Milling, A.1    Smalla, K.2    Maidl, F.3    Schloter, M.4    Munch, J.5
  • 30
    • 33845429173 scopus 로고    scopus 로고
    • Managing Africa's soils: Approaches and challenges
    • M. P. Gichuru, A. Bationo, M. A. Bekunda, H. C. Goma, P. L. Mafangoya, D. N. Mugendi, H. M. Murwira, S. M. Nandwa, P. Nyathi, and M. Swift ed, Academy Science Publishers, Nairobi, Kenya
    • Murwira, H. K. 2003. Managing Africa's soils: approaches and challenges, p. 293-306. In M. P. Gichuru, A. Bationo, M. A. Bekunda, H. C. Goma, P. L. Mafangoya, D. N. Mugendi, H. M. Murwira, S. M. Nandwa, P. Nyathi, and M. Swift (ed.), Soil fertility management in Africa: a regional perspective. Academy Science Publishers, Nairobi, Kenya.
    • (2003) Soil fertility management in Africa: A regional perspective , pp. 293-306
    • Murwira, H.K.1
  • 31
    • 0036330611 scopus 로고    scopus 로고
    • Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
    • Roesch, C., A. Mergel, and H. Bothe. 2002. Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl. Environ. Microbiol. 68:3818-3829.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3818-3829
    • Roesch, C.1    Mergel, A.2    Bothe, H.3
  • 33
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe, J. H., K. P. Witzel, and W. Liesack. 1997. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63:4704-4712.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 35
    • 0001594007 scopus 로고
    • 2 fixation in alley cropping systems: Estimation and contribution to N balance
    • 2 fixation in alley cropping systems: estimation and contribution to N balance. Plant Soil 174:119-141.
    • (1995) Plant Soil , vol.174 , pp. 119-141
    • Sanginga, N.1    Vanlauwe, B.2    Danso, S.K.A.3
  • 36
    • 40949097432 scopus 로고    scopus 로고
    • Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
    • Santoro, A. E., C. A. Francis, N. R. de Sieyes, and A. B. Boehm. 2008. Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ. Microbiol. 10:1068-1079.
    • (2008) Environ. Microbiol , vol.10 , pp. 1068-1079
    • Santoro, A.E.1    Francis, C.A.2    de Sieyes, N.R.3    Boehm, A.B.4
  • 37
    • 58549087182 scopus 로고    scopus 로고
    • Dynamics and functional relevance of ammonia-oxidizing archaea in agricultural soil. Environ
    • doi:10.1111/j.1462-2920.2008. 01783.x
    • Schauss, K., A. Focks, S. Leininger, A. Kotzerke, H. Heuer, and S. Thiele-Bruhn. 2008. Dynamics and functional relevance of ammonia-oxidizing archaea in agricultural soil. Environ. Microbiol. doi:10.1111/j.1462-2920.2008. 01783.x.
    • (2008) Microbiol
    • Schauss, K.1    Focks, A.2    Leininger, S.3    Kotzerke, A.4    Heuer, H.5    Thiele-Bruhn, S.6
  • 39
    • 43449114462 scopus 로고    scopus 로고
    • Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam
    • Shen, J.-P., L.-M. Zhang, Y.-G. Zhu, J.-B. Zhang, and J.-Z. He. 2008. Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam. Environ. Microbiol. 10:1601-1611.
    • (2008) Environ. Microbiol , vol.10 , pp. 1601-1611
    • Shen, J.-P.1    Zhang, L.-M.2    Zhu, Y.-G.3    Zhang, J.-B.4    He, J.-Z.5
  • 42
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK, and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • Throbäck, I. N., K. Enwall, A. Jarvis, and S. Hallin. 2004. Reassessing PCR primers targeting nirS, nirK, and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol. Ecol. 49:401-417.
    • (2004) FEMS Microbiol. Ecol , vol.49 , pp. 401-417
    • Throbäck, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 43
    • 0036195362 scopus 로고    scopus 로고
    • Nitrogen cycling in the ocean: New perspectives on processes and paradigms
    • Zehr, J. P., and B. B. Ward. 2002. Nitrogen cycling in the ocean: new perspectives on processes and paradigms. Appl. Environ. Microbiol. 68:1015-1024.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 1015-1024
    • Zehr, J.P.1    Ward, B.B.2


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