-
5
-
-
0000452737
-
Antibiotic activity of lichens
-
Burkholder PR, Evans AW, McVeigh I, Thornton HK. Antibiotic activity of lichens. P Natl Acad Sci USA 1944, 30:250.
-
(1944)
P Natl Acad Sci USA
, vol.30
, pp. 250
-
-
Burkholder, P.R.1
Evans, A.W.2
McVeigh, I.3
Thornton, H.K.4
-
6
-
-
0032077429
-
The lichen symbiosis-what is so spectacular about it?
-
Honegger R. The lichen symbiosis-what is so spectacular about it?. The Lichenologist 1998, 30:193-212.
-
(1998)
The Lichenologist
, vol.30
, pp. 193-212
-
-
Honegger, R.1
-
7
-
-
9244255861
-
Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex
-
Wedin M, Döring H, Gilenstam G. Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex. New Phytol 2004, 164:459-465.
-
(2004)
New Phytol
, vol.164
, pp. 459-465
-
-
Wedin, M.1
Döring, H.2
Gilenstam, G.3
-
9
-
-
0035927638
-
Major fungal lineages are derived from lichen symbiotic ancestors
-
10.1038/35082053, 11418855
-
Lutzoni F, Pagel M, Reeb V. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 2001, 411:937-940. 10.1038/35082053, 11418855.
-
(2001)
Nature
, vol.411
, pp. 937-940
-
-
Lutzoni, F.1
Pagel, M.2
Reeb, V.3
-
11
-
-
0000533857
-
Scanning electron-microscope study of early lichen synthesis
-
10.1126/science.200.4345.1062, 17740702
-
Ahmadjian V, Jacobs JB, Russell LA. Scanning electron-microscope study of early lichen synthesis. Science 1978, 200:1062-1064. 10.1126/science.200.4345.1062, 17740702.
-
(1978)
Science
, vol.200
, pp. 1062-1064
-
-
Ahmadjian, V.1
Jacobs, J.B.2
Russell, L.A.3
-
12
-
-
84974306775
-
The culture and synthesis of Endocarpon pusillum and Staurothele clopima
-
Ahmadjian VHH. The culture and synthesis of Endocarpon pusillum and Staurothele clopima. Lichenologist 1970, 4:13.
-
(1970)
Lichenologist
, vol.4
, pp. 13
-
-
Ahmadjian, V.H.H.1
-
13
-
-
0036661059
-
Morphological and molecular analysis of early stages in the resynthesis of the lichen Baeomyces rufus
-
Trembley ML, Ringli C, Honegger R. Morphological and molecular analysis of early stages in the resynthesis of the lichen Baeomyces rufus. Mycol Res 2002, 106:768-776.
-
(2002)
Mycol Res
, vol.106
, pp. 768-776
-
-
Trembley, M.L.1
Ringli, C.2
Honegger, R.3
-
15
-
-
0001347887
-
Lectin from the lichen Nephroma laevigatum. Localization and function.
-
Kardish NSL, Flemminger N, Galun M. Lectin from the lichen Nephroma laevigatum. Localization and function. Symbiosis 1991, 11:47-62.
-
(1991)
Symbiosis
, vol.11
, pp. 47-62
-
-
Kardish, N.S.L.1
Flemminger, N.2
Galun, M.3
-
16
-
-
0026948144
-
Reactivity of lichen lectins with blood typed canine erythrocytes
-
10.1016/0034-5288(92)90132-L, 1465504
-
Andrews GA, Chavey PS, Smith JE. Reactivity of lichen lectins with blood typed canine erythrocytes. Res Vet Sci 1992, 53:315-319. 10.1016/0034-5288(92)90132-L, 1465504.
-
(1992)
Res Vet Sci
, vol.53
, pp. 315-319
-
-
Andrews, G.A.1
Chavey, P.S.2
Smith, J.E.3
-
17
-
-
0017836999
-
Phytohaemagglutinins from the nitrogen-fixing lichens Peltigera canina and P. polydactyla
-
Lockhart C, Rowell P, Stewart W. Phytohaemagglutinins from the nitrogen-fixing lichens Peltigera canina and P. polydactyla. FEMS Microbiology Letters 1978, 3:127-130.
-
(1978)
FEMS Microbiology Letters
, vol.3
, pp. 127-130
-
-
Lockhart, C.1
Rowell, P.2
Stewart, W.3
-
19
-
-
0342913365
-
Polyols produced by the cultured phyco-and mycobionts of some Ramalina species
-
Komiya T, Shibata S. Polyols produced by the cultured phyco-and mycobionts of some Ramalina species. Phytochemistry 1971, 10:695-699.
-
(1971)
Phytochemistry
, vol.10
, pp. 695-699
-
-
Komiya, T.1
Shibata, S.2
-
20
-
-
34250468533
-
Relationship between carbohydrate movement and symbiosis in lichens with Green-Algae
-
Hill DJ, Ahmadjia V. Relationship between carbohydrate movement and symbiosis in lichens with Green-Algae. Planta 1972, 103:267.
-
(1972)
Planta
, vol.103
, pp. 267
-
-
Hill, D.J.1
Ahmadjia, V.2
-
22
-
-
0035026119
-
Fungal melanins as a sun screen for symbiotic green algae in the lichen Lobaria pulmonaria
-
Gauslaa Y, Solhaug KA. Fungal melanins as a sun screen for symbiotic green algae in the lichen Lobaria pulmonaria. Oecologia 2001, 126:462-471.
-
(2001)
Oecologia
, vol.126
, pp. 462-471
-
-
Gauslaa, Y.1
Solhaug, K.A.2
-
23
-
-
79955947578
-
Fungal and algal gene expression in early developmental stages of lichen-symbiosis
-
10.3852/10-064, 20943535
-
Joneson S, Armaleo D, Lutzoni F. Fungal and algal gene expression in early developmental stages of lichen-symbiosis. Mycologia 2011, 103:291-306. 10.3852/10-064, 20943535.
-
(2011)
Mycologia
, vol.103
, pp. 291-306
-
-
Joneson, S.1
Armaleo, D.2
Lutzoni, F.3
-
24
-
-
64549116320
-
Compatibility and thigmotropism in the lichen symbiosis: a reappraisal
-
Suzanne Joneson FL. Compatibility and thigmotropism in the lichen symbiosis: a reappraisal. Symbiosis 2009, 47:109-115.
-
(2009)
Symbiosis
, vol.47
, pp. 109-115
-
-
Suzanne Joneson, F.L.1
-
25
-
-
38049101957
-
-
Bishen Singh Mahendra Pal Singh: Dehradun
-
Awasthi DD. A hand book of lichens 2000, Bishen Singh Mahendra Pal Singh: Dehradun.
-
(2000)
A hand book of lichens
-
-
Awasthi, D.D.1
-
26
-
-
79956160547
-
Survival analyses of symbionts isolated from Endocarpon pusillum Hedwig to desiccation and starvation stress
-
10.1007/s11427-011-4164-z, 21574048
-
Zhang T, Wei J. Survival analyses of symbionts isolated from Endocarpon pusillum Hedwig to desiccation and starvation stress. Sci China Life Sci 2011, 54:480-489. 10.1007/s11427-011-4164-z, 21574048.
-
(2011)
Sci China Life Sci
, vol.54
, pp. 480-489
-
-
Zhang, T.1
Wei, J.2
-
27
-
-
84862992704
-
Mitochondrial genomes from the lichenized fungi Peltigera membranacea and Peltigera malacea: Features and phylogeny
-
Xavier BB, Miao VPW, Jonsson ZO, Andresson OS. Mitochondrial genomes from the lichenized fungi Peltigera membranacea and Peltigera malacea: Features and phylogeny. Fungal Biol-Uk 2012, 116:802-814.
-
(2012)
Fungal Biol-Uk
, vol.116
, pp. 802-814
-
-
Xavier, B.B.1
Miao, V.P.W.2
Jonsson, Z.O.3
Andresson, O.S.4
-
28
-
-
84867900793
-
Characterization of a transcriptome from a non-model organism, Cladonia rangiferina, the grey reindeer lichen, using high-throughput next generation sequencing and EST sequence data
-
10.1186/1471-2164-13-575, 3534622, 23110403
-
Junttila SM, Rudd S. Characterization of a transcriptome from a non-model organism, Cladonia rangiferina, the grey reindeer lichen, using high-throughput next generation sequencing and EST sequence data. BMC Genomics 2012, 13:575. 10.1186/1471-2164-13-575, 3534622, 23110403.
-
(2012)
BMC Genomics
, vol.13
, pp. 575
-
-
Junttila, S.M.1
Rudd, S.2
-
29
-
-
82355182825
-
Construction and characterization of a full-length cDNA library from mycobiont of Endocarpon pusillum (lichen-forming Ascomycota)
-
Wang YY, Zhang T, Zhou QM, Wei JC. Construction and characterization of a full-length cDNA library from mycobiont of Endocarpon pusillum (lichen-forming Ascomycota). World J Microb Biot 2011, 27:2873-2884.
-
(2011)
World J Microb Biot
, vol.27
, pp. 2873-2884
-
-
Wang, Y.Y.1
Zhang, T.2
Zhou, Q.M.3
Wei, J.C.4
-
30
-
-
75549086594
-
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
-
10.1093/nar/gkp931, 2808972, 19892828
-
Ostlund G, Schmitt T, Forslund K, Kostler T, Messina DN, Roopra S, Frings O, Sonnhammer ELL. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res 2010, 38:D196-D203. 10.1093/nar/gkp931, 2808972, 19892828.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Ostlund, G.1
Schmitt, T.2
Forslund, K.3
Kostler, T.4
Messina, D.N.5
Roopra, S.6
Frings, O.7
Sonnhammer, E.L.L.8
-
31
-
-
0024361901
-
Repeat-Induced G-C to a-T Mutations in Neurospora
-
10.1126/science.2544994, 2544994
-
Cambareri EB, Jensen BC, Schabtach E, Selker EU. Repeat-Induced G-C to a-T Mutations in Neurospora. Science 1989, 244:1571-1575. 10.1126/science.2544994, 2544994.
-
(1989)
Science
, vol.244
, pp. 1571-1575
-
-
Cambareri, E.B.1
Jensen, B.C.2
Schabtach, E.3
Selker, E.U.4
-
32
-
-
0031927613
-
A methylated Neurospora 5S rRNA pseudogene contains a transposable element inactivated by repeat-induced point mutation
-
1460257, 9691037
-
Margolin BS, Garrett-Engele PW, Stevens JN, Fritz DY, Garrett-Engele C, Metzenberg RL, Selker EU. A methylated Neurospora 5S rRNA pseudogene contains a transposable element inactivated by repeat-induced point mutation. Genetics 1998, 149:1787-1797. 1460257, 9691037.
-
(1998)
Genetics
, vol.149
, pp. 1787-1797
-
-
Margolin, B.S.1
Garrett-Engele, P.W.2
Stevens, J.N.3
Fritz, D.Y.4
Garrett-Engele, C.5
Metzenberg, R.L.6
Selker, E.U.7
-
33
-
-
0242416979
-
The methylated component of the Neurospora crassa genome
-
10.1038/nature01564, 12712205
-
Selker EU, Tountas NA, Cross SH, Margolin BS, Murphy JG, Bird AP, Freitag M. The methylated component of the Neurospora crassa genome. Nature 2003, 422:893-897. 10.1038/nature01564, 12712205.
-
(2003)
Nature
, vol.422
, pp. 893-897
-
-
Selker, E.U.1
Tountas, N.A.2
Cross, S.H.3
Margolin, B.S.4
Murphy, J.G.5
Bird, A.P.6
Freitag, M.7
-
34
-
-
58249097202
-
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
-
10.1186/1471-2105-9-478, 2621366, 19014496
-
Hane JK, Oliver RP. RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences. Bmc Bioinformatics 2008, 9:478-490. 10.1186/1471-2105-9-478, 2621366, 19014496.
-
(2008)
Bmc Bioinformatics
, vol.9
, pp. 478-490
-
-
Hane, J.K.1
Oliver, R.P.2
-
35
-
-
59749094857
-
Emerging concepts in effector biology of plant-associated organisms
-
Hogenhout SA, Van der Hoorn RAL, Terauchi R, Kamoun S. Emerging concepts in effector biology of plant-associated organisms. Mol Plant Microbe In 2009, 22:115-122.
-
(2009)
Mol Plant Microbe In
, vol.22
, pp. 115-122
-
-
Hogenhout, S.A.1
Van der Hoorn, R.A.L.2
Terauchi, R.3
Kamoun, S.4
-
36
-
-
79960732184
-
A secreted effector protein of laccaria bicolor is required for symbiosis development
-
10.1016/j.cub.2011.05.033, 21757352
-
Plett JM, Kemppainen M, Kale SD, Kohler A, Legue V, Brun A, Tyler BM, Pardo AG, Martin F. A secreted effector protein of laccaria bicolor is required for symbiosis development. Curr Biol 2011, 21:1197-1203. 10.1016/j.cub.2011.05.033, 21757352.
-
(2011)
Curr Biol
, vol.21
, pp. 1197-1203
-
-
Plett, J.M.1
Kemppainen, M.2
Kale, S.D.3
Kohler, A.4
Legue, V.5
Brun, A.6
Tyler, B.M.7
Pardo, A.G.8
Martin, F.9
-
37
-
-
79960710804
-
A secreted fungal effector of glomus intraradices promotes symbiotic biotrophy
-
10.1016/j.cub.2011.06.044, 21757354
-
Kloppholz S, Kuhn H, Requena N. A secreted fungal effector of glomus intraradices promotes symbiotic biotrophy. Curr Biol 2011, 21:1204-1209. 10.1016/j.cub.2011.06.044, 21757354.
-
(2011)
Curr Biol
, vol.21
, pp. 1204-1209
-
-
Kloppholz, S.1
Kuhn, H.2
Requena, N.3
-
38
-
-
78349309913
-
The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves
-
10.1016/j.jplph.2010.05.024, 20688416
-
Deller S, Hammond-Kosack KE, Rudd JJ. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. J plant physiol 2011, 168:63-71. 10.1016/j.jplph.2010.05.024, 20688416.
-
(2011)
J plant physiol
, vol.168
, pp. 63-71
-
-
Deller, S.1
Hammond-Kosack, K.E.2
Rudd, J.J.3
-
39
-
-
80052523116
-
Insights from the first putative biosynthetic gene cluster for a lichen depside and depsidone
-
10.3852/10-335, 21289108
-
Armaleo D, Sun XM, Culberson C. Insights from the first putative biosynthetic gene cluster for a lichen depside and depsidone. Mycologia 2011, 103:741-754. 10.3852/10-335, 21289108.
-
(2011)
Mycologia
, vol.103
, pp. 741-754
-
-
Armaleo, D.1
Sun, X.M.2
Culberson, C.3
-
40
-
-
79959694730
-
Isolation and characterization of a reducing polyketide synthase gene from the lichen-forming fungus usnea longissima
-
10.1007/s12275-011-0362-4, 21717335
-
Wang Y, Kim JA, Cheong YH, Joshi Y, Koh YJ, Hur JS. Isolation and characterization of a reducing polyketide synthase gene from the lichen-forming fungus usnea longissima. J Microbiol 2011, 49:473-480. 10.1007/s12275-011-0362-4, 21717335.
-
(2011)
J Microbiol
, vol.49
, pp. 473-480
-
-
Wang, Y.1
Kim, J.A.2
Cheong, Y.H.3
Joshi, Y.4
Koh, Y.J.5
Hur, J.S.6
-
41
-
-
84862335195
-
A new reducing polyketide synthase gene from the lichen-forming fungus Cladonia metacorallifera
-
10.3852/11-001, 22223171
-
Kim JA, Hong SG, Cheong YH, Koh YJ, Hur JS. A new reducing polyketide synthase gene from the lichen-forming fungus Cladonia metacorallifera. Mycologia 2012, 104:362-370. 10.3852/11-001, 22223171.
-
(2012)
Mycologia
, vol.104
, pp. 362-370
-
-
Kim, J.A.1
Hong, S.G.2
Cheong, Y.H.3
Koh, Y.J.4
Hur, J.S.5
-
42
-
-
84856471397
-
Isolation and characterization of a non-reducing polyketide synthase gene from the lichen-forming fungus Usnea longissima
-
Wang Y, Kim JA, Cheong YH, Koh YJ, Hur JS. Isolation and characterization of a non-reducing polyketide synthase gene from the lichen-forming fungus Usnea longissima. Mycol Prog 2012, 11:75-83.
-
(2012)
Mycol Prog
, vol.11
, pp. 75-83
-
-
Wang, Y.1
Kim, J.A.2
Cheong, Y.H.3
Koh, Y.J.4
Hur, J.S.5
-
43
-
-
58149231071
-
Desiccation-tolerance in lichens: a review
-
Kranner I, Beckett R, Hochman A, Nash TH. Desiccation-tolerance in lichens: a review. Bryologist 2008, 111:576-593.
-
(2008)
Bryologist
, vol.111
, pp. 576-593
-
-
Kranner, I.1
Beckett, R.2
Hochman, A.3
Nash, T.H.4
-
44
-
-
0023062991
-
G-Proteins - Transducers of receptor-generated signals
-
10.1146/annurev.bi.56.070187.003151, 3113327
-
Gilman AG. G-Proteins - Transducers of receptor-generated signals. Annu Rev Biochem 1987, 56:615-649. 10.1146/annurev.bi.56.070187.003151, 3113327.
-
(1987)
Annu Rev Biochem
, vol.56
, pp. 615-649
-
-
Gilman, A.G.1
-
45
-
-
0034513622
-
The genetics of hyphal fusion and vegetative incompatibility in filamentous ascomycete fungi
-
10.1146/annurev.genet.34.1.165, 11092825
-
Glass NL, Jacobson DJ, Shiu PK. The genetics of hyphal fusion and vegetative incompatibility in filamentous ascomycete fungi. Annu Rev Genet 2000, 34:165-186. 10.1146/annurev.genet.34.1.165, 11092825.
-
(2000)
Annu Rev Genet
, vol.34
, pp. 165-186
-
-
Glass, N.L.1
Jacobson, D.J.2
Shiu, P.K.3
-
46
-
-
0033661670
-
Vegetative incompatibility in filamentous fungi: Podospora and Neurospora provide some clues
-
10.1016/S1369-5274(00)00148-X, 11121781
-
Saupe SJ, Clave C, Begueret J. Vegetative incompatibility in filamentous fungi: Podospora and Neurospora provide some clues. Curr Opin Microbiol 2000, 3:608-612. 10.1016/S1369-5274(00)00148-X, 11121781.
-
(2000)
Curr Opin Microbiol
, vol.3
, pp. 608-612
-
-
Saupe, S.J.1
Clave, C.2
Begueret, J.3
-
47
-
-
29244443634
-
Comparative analysis of programmed cell death pathways in filamentous fungi
-
10.1186/1471-2164-6-177, 1325252, 16336669
-
Fedorova ND, Badger JH, Robson GD, Wortman JR, Nierman WC. Comparative analysis of programmed cell death pathways in filamentous fungi. BMC Genomics 2005, 6:177-191. 10.1186/1471-2164-6-177, 1325252, 16336669.
-
(2005)
BMC Genomics
, vol.6
, pp. 177-191
-
-
Fedorova, N.D.1
Badger, J.H.2
Robson, G.D.3
Wortman, J.R.4
Nierman, W.C.5
-
48
-
-
0033823006
-
Molecular genetics of heterokaryon incompatibility in filamentous ascomycetes
-
Saupe SJ. Molecular genetics of heterokaryon incompatibility in filamentous ascomycetes. Microbiol Mol Biol R 2000, 64:489.
-
(2000)
Microbiol Mol Biol R
, vol.64
, pp. 489
-
-
Saupe, S.J.1
-
49
-
-
12344329187
-
The natural history of group I introns
-
10.1016/j.tig.2004.12.007, 15661357
-
Haugen P, Simon DM, Bhattacharya D. The natural history of group I introns. Trends Genet 2005, 21:111-119. 10.1016/j.tig.2004.12.007, 15661357.
-
(2005)
Trends Genet
, vol.21
, pp. 111-119
-
-
Haugen, P.1
Simon, D.M.2
Bhattacharya, D.3
-
50
-
-
0028964818
-
Phylogeny of discomycetes and early radiations of the apothecial ascomycotina inferred from Ssu Rdna sequence data
-
10.1006/emyc.1995.1002, 7614369
-
Gargas A, Taylor JW. Phylogeny of discomycetes and early radiations of the apothecial ascomycotina inferred from Ssu Rdna sequence data. Exp Mycol 1995, 19:7-15. 10.1006/emyc.1995.1002, 7614369.
-
(1995)
Exp Mycol
, vol.19
, pp. 7-15
-
-
Gargas, A.1
Taylor, J.W.2
-
51
-
-
0036017384
-
Vertical evolution and intragenic spread of lichen-fungal group I introns
-
10.1007/s00239-001-2305-x, 12165844
-
Bhattacharya D, Friedl T, Helms G. Vertical evolution and intragenic spread of lichen-fungal group I introns. J Mol Evol 2002, 55:74-84. 10.1007/s00239-001-2305-x, 12165844.
-
(2002)
J Mol Evol
, vol.55
, pp. 74-84
-
-
Bhattacharya, D.1
Friedl, T.2
Helms, G.3
-
52
-
-
0028928940
-
Positions of multiple insertions in SSU rDNA of lichen-forming fungi
-
Gargas A, DePriest PT, Taylor JW. Positions of multiple insertions in SSU rDNA of lichen-forming fungi. Mol Biol Evol 1995, 12:208-218.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 208-218
-
-
Gargas, A.1
DePriest, P.T.2
Taylor, J.W.3
-
53
-
-
0029836453
-
Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi
-
10.1093/oxfordjournals.molbev.a025658, 8751999
-
Hibbett DS. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Mol Biol Evol 1996, 13:903-917. 10.1093/oxfordjournals.molbev.a025658, 8751999.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 903-917
-
-
Hibbett, D.S.1
-
54
-
-
0000532406
-
Molecular innovations in lichen systematics - the use of ribosomal and intron nucleotide-sequences in the cladonia-chlorophaea complex
-
Depriest PT. Molecular innovations in lichen systematics - the use of ribosomal and intron nucleotide-sequences in the cladonia-chlorophaea complex. Bryologist 1993, 96:314-325.
-
(1993)
Bryologist
, vol.96
, pp. 314-325
-
-
Depriest, P.T.1
-
55
-
-
0027193293
-
Sequence and topology of the CorA magnesium transport systems of Salmonella typhimurium and Escherichia coli. Identification of a new class of transport protein
-
Smith RL, Banks JL, Snavely MD, Maguire ME. Sequence and topology of the CorA magnesium transport systems of Salmonella typhimurium and Escherichia coli. Identification of a new class of transport protein. J Biol Chem 1993, 268:14071-14080.
-
(1993)
J Biol Chem
, vol.268
, pp. 14071-14080
-
-
Smith, R.L.1
Banks, J.L.2
Snavely, M.D.3
Maguire, M.E.4
-
56
-
-
0036312670
-
Structure, properties and regulation of magnesium transport proteins
-
10.1023/A:1016078832697, 12206392
-
Kehres DG, Maguire ME. Structure, properties and regulation of magnesium transport proteins. Biometals 2002, 15:261-270. 10.1023/A:1016078832697, 12206392.
-
(2002)
Biometals
, vol.15
, pp. 261-270
-
-
Kehres, D.G.1
Maguire, M.E.2
-
57
-
-
0037031139
-
Large Mg2 + -dependent currents are associated with the increased expression of ALR1 in Saccharomyces cerevisiae
-
10.1111/j.1574-6968.2002.tb11311.x, 12167543
-
Liu GJ, Martin DK, Gardner RC, Ryan PR. Large Mg2 + -dependent currents are associated with the increased expression of ALR1 in Saccharomyces cerevisiae. FEMS Microbiology Letters 2002, 213:231-237. 10.1111/j.1574-6968.2002.tb11311.x, 12167543.
-
(2002)
FEMS Microbiology Letters
, vol.213
, pp. 231-237
-
-
Liu, G.J.1
Martin, D.K.2
Gardner, R.C.3
Ryan, P.R.4
-
58
-
-
0038472447
-
Genes for magnesium transport
-
10.1016/S1369-5266(03)00032-3, 12753976
-
Gardner RC. Genes for magnesium transport. Curr Opin Plant Biol 2003, 6:263-267. 10.1016/S1369-5266(03)00032-3, 12753976.
-
(2003)
Curr Opin Plant Biol
, vol.6
, pp. 263-267
-
-
Gardner, R.C.1
-
59
-
-
84862786321
-
Magnesium deficiency results in damage of nitrogen and carbon cross-talk of maize and improvement by cerium addition
-
10.1007/s12011-012-9340-x, 22294153
-
Zhao H, Zhou Q, Zhou M, Li C, Gong X, Liu C, Qu C, Si W, Hong F. Magnesium deficiency results in damage of nitrogen and carbon cross-talk of maize and improvement by cerium addition. Biol Trace Elem Res 2012, 148:102-109. 10.1007/s12011-012-9340-x, 22294153.
-
(2012)
Biol Trace Elem Res
, vol.148
, pp. 102-109
-
-
Zhao, H.1
Zhou, Q.2
Zhou, M.3
Li, C.4
Gong, X.5
Liu, C.6
Qu, C.7
Si, W.8
Hong, F.9
-
60
-
-
0017251681
-
Photochemical activity and components of membrane preparations from blue-green-algae.4. Effects of magnesium and chloride-Ions on light-induced electron-transport in membrane fragments from a blue-green-alga
-
10.1016/0005-2728(76)90188-2, 813781
-
Mcswain BD, Tsujimoto HY, Arnon DI. Photochemical activity and components of membrane preparations from blue-green-algae.4. Effects of magnesium and chloride-Ions on light-induced electron-transport in membrane fragments from a blue-green-alga. Biochimica Et Biophysica Acta 1976, 423:313-322. 10.1016/0005-2728(76)90188-2, 813781.
-
(1976)
Biochimica Et Biophysica Acta
, vol.423
, pp. 313-322
-
-
Mcswain, B.D.1
Tsujimoto, H.Y.2
Arnon, D.I.3
-
61
-
-
0014473487
-
Carbohydrate movement from autotrophs to heterotrophs in parasitic and mutualistic symbiosis
-
10.1111/j.1469-185X.1969.tb00821.x, 4890118
-
Smith D, Muscatine L, Lewis D. Carbohydrate movement from autotrophs to heterotrophs in parasitic and mutualistic symbiosis. Biol Rev Camb Philos Soc 1969, 44:17-90. 10.1111/j.1469-185X.1969.tb00821.x, 4890118.
-
(1969)
Biol Rev Camb Philos Soc
, vol.44
, pp. 17-90
-
-
Smith, D.1
Muscatine, L.2
Lewis, D.3
-
62
-
-
0030197545
-
The effect of oxygen deprivation on inorganic nitrogen uptake in an Antarctic macrolichen
-
Crittenden PD. The effect of oxygen deprivation on inorganic nitrogen uptake in an Antarctic macrolichen. Lichenologist 1996, 28:347-354.
-
(1996)
Lichenologist
, vol.28
, pp. 347-354
-
-
Crittenden, P.D.1
-
63
-
-
0031669709
-
Nutrient exchange in an Antarctic macrolichen during summer snowfall snow melt events
-
Crittenden PD. Nutrient exchange in an Antarctic macrolichen during summer snowfall snow melt events. New Phytol 1998, 139:697-707.
-
(1998)
New Phytol
, vol.139
, pp. 697-707
-
-
Crittenden, P.D.1
-
64
-
-
3543051867
-
Organic and inorganic nitrogen uptake in lichens
-
Dahlman L, Persson J, Palmqvist K, Nasholm T. Organic and inorganic nitrogen uptake in lichens. Planta 2004, 219:459-467.
-
(2004)
Planta
, vol.219
, pp. 459-467
-
-
Dahlman, L.1
Persson, J.2
Palmqvist, K.3
Nasholm, T.4
-
65
-
-
0032812009
-
Algal growth on organic compounds as nitrogen sources
-
Berman T, Chava S. Algal growth on organic compounds as nitrogen sources. J Plankton Res 1999, 21:1423-1437.
-
(1999)
J Plankton Res
, vol.21
, pp. 1423-1437
-
-
Berman, T.1
Chava, S.2
-
66
-
-
84862891355
-
Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification
-
10.1093/molbev/msr123, 3383101, 21680869
-
McDonald TR, Dietrich FS, Lutzoni F. Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification. Mol Biol Evol 2012, 29:51-60. 10.1093/molbev/msr123, 3383101, 21680869.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 51-60
-
-
McDonald, T.R.1
Dietrich, F.S.2
Lutzoni, F.3
-
67
-
-
84875689571
-
High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family
-
10.1186/1471-2164-14-225, 3663718, 23557360
-
McDonald TR, Mueller O, Dietrich FS, Lutzoni F. High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family. Bmc Genomics 2013, 14:225. 10.1186/1471-2164-14-225, 3663718, 23557360.
-
(2013)
Bmc Genomics
, vol.14
, pp. 225
-
-
McDonald, T.R.1
Mueller, O.2
Dietrich, F.S.3
Lutzoni, F.4
-
68
-
-
77649092560
-
A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis
-
10.1371/journal.pbio.1000303, 2817709, 20161717
-
Wahl R, Wippel K, Goos S, Kämper J, Sauer N. A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis. Plos Biol 2010, 8:e1000303. 10.1371/journal.pbio.1000303, 2817709, 20161717.
-
(2010)
Plos Biol
, vol.8
-
-
Wahl, R.1
Wippel, K.2
Goos, S.3
Kämper, J.4
Sauer, N.5
-
69
-
-
78249277408
-
St Leger RJ: Mrt, a gene unique to fungi, encodes an oligosaccharide transporter and facilitates rhizosphere competency in metarhizium robertsii
-
10.1104/pp.110.163014, 2971628, 20837701
-
Fang WG. St Leger RJ: Mrt, a gene unique to fungi, encodes an oligosaccharide transporter and facilitates rhizosphere competency in metarhizium robertsii. Plant Physiology 2010, 154:1549-1557. 10.1104/pp.110.163014, 2971628, 20837701.
-
(2010)
Plant Physiology
, vol.154
, pp. 1549-1557
-
-
Fang, W.G.1
-
70
-
-
82755166961
-
A versatile monosaccharide transporter that operates in the arbuscular mycorrhizal fungus glomus sp is crucial for the symbiotic relationship with plants
-
10.1105/tpc.111.089813, 3229151, 21972259
-
Helber N, Wippel K, Sauer N, Schaarschmidt S, Hause B, Requena N. A versatile monosaccharide transporter that operates in the arbuscular mycorrhizal fungus glomus sp is crucial for the symbiotic relationship with plants. Plant Cell 2011, 23:3812-3823. 10.1105/tpc.111.089813, 3229151, 21972259.
-
(2011)
Plant Cell
, vol.23
, pp. 3812-3823
-
-
Helber, N.1
Wippel, K.2
Sauer, N.3
Schaarschmidt, S.4
Hause, B.5
Requena, N.6
-
71
-
-
0034946797
-
The role of haustoria in sugar supply during infection of broad bean by the rust fungus Uromyces fabae
-
Voegele RT, Struck C, Hahn M, Mendgen K. The role of haustoria in sugar supply during infection of broad bean by the rust fungus Uromyces fabae. P Natl Acad Sci USA 2001, 98:8133-8138.
-
(2001)
P Natl Acad Sci USA
, vol.98
, pp. 8133-8138
-
-
Voegele, R.T.1
Struck, C.2
Hahn, M.3
Mendgen, K.4
-
72
-
-
20444419028
-
Molecular and functional characterization of a fructose specific transporter from the gray mold fungus Botrytis cinerea
-
10.1016/j.fgb.2005.03.001, 15950157
-
Doehlemann G, Molitor F, Hahn M. Molecular and functional characterization of a fructose specific transporter from the gray mold fungus Botrytis cinerea. Fungal Genet Biol 2005, 42:601-610. 10.1016/j.fgb.2005.03.001, 15950157.
-
(2005)
Fungal Genet Biol
, vol.42
, pp. 601-610
-
-
Doehlemann, G.1
Molitor, F.2
Hahn, M.3
-
73
-
-
0034086420
-
Functional characterization of the Amanita muscaria monosaccharide transporter, Am Mst1
-
Wiese J, Kleber R, Hampp R, Nehls U. Functional characterization of the Amanita muscaria monosaccharide transporter, Am Mst1. Plant Biology 2000, 2:278-282.
-
(2000)
Plant Biology
, vol.2
, pp. 278-282
-
-
Wiese, J.1
Kleber, R.2
Hampp, R.3
Nehls, U.4
-
74
-
-
33846573399
-
Hexose uptake in the plant symbiotic ascomycete Tuber borchii Vittadini: biochemical features and expression pattern of the transporter TBHXT1
-
10.1016/j.fgb.2006.08.001, 17005424
-
Polidori E, Ceccaroli P, Saltarelli R, Guescini M, Menotta M, Agostini D, Palma F, Stocchi V. Hexose uptake in the plant symbiotic ascomycete Tuber borchii Vittadini: biochemical features and expression pattern of the transporter TBHXT1. Fungal Genet Biol 2007, 44:187-198. 10.1016/j.fgb.2006.08.001, 17005424.
-
(2007)
Fungal Genet Biol
, vol.44
, pp. 187-198
-
-
Polidori, E.1
Ceccaroli, P.2
Saltarelli, R.3
Guescini, M.4
Menotta, M.5
Agostini, D.6
Palma, F.7
Stocchi, V.8
-
75
-
-
33845914300
-
Characterization of a carbohydrate transporter from symbiotic glomeromycotan fungi
-
10.1038/nature05364, 17167486
-
Schussler A, Martin H, Cohen D, Fitz M, Wipf D. Characterization of a carbohydrate transporter from symbiotic glomeromycotan fungi. Nature 2006, 444:933-936. 10.1038/nature05364, 17167486.
-
(2006)
Nature
, vol.444
, pp. 933-936
-
-
Schussler, A.1
Martin, H.2
Cohen, D.3
Fitz, M.4
Wipf, D.5
-
76
-
-
10944249673
-
Localization of GDP-mannose transporter in the Golgi requires retrieval to the endoplasmic reticulum depending on its cytoplasmic tail and coatomer
-
10.1242/jcs.01491, 15494368
-
Abe M, Noda Y, Adachi H, Yoda K. Localization of GDP-mannose transporter in the Golgi requires retrieval to the endoplasmic reticulum depending on its cytoplasmic tail and coatomer. J Cell Sci 2004, 117:5687-5696. 10.1242/jcs.01491, 15494368.
-
(2004)
J Cell Sci
, vol.117
, pp. 5687-5696
-
-
Abe, M.1
Noda, Y.2
Adachi, H.3
Yoda, K.4
-
77
-
-
0030163126
-
Tetracyclines: antibiotic action, uptake, and resistance mechanisms
-
10.1007/s002030050339, 8661929
-
Schnappinger D, Hillen W. Tetracyclines: antibiotic action, uptake, and resistance mechanisms. Arch Microbiol 1996, 165:359-369. 10.1007/s002030050339, 8661929.
-
(1996)
Arch Microbiol
, vol.165
, pp. 359-369
-
-
Schnappinger, D.1
Hillen, W.2
-
78
-
-
0034680167
-
Molecular mechanisms that confer antibacterial drug resistance
-
10.1038/35021219, 10963607
-
Walsh C. Molecular mechanisms that confer antibacterial drug resistance. Nature 2000, 406:775-781. 10.1038/35021219, 10963607.
-
(2000)
Nature
, vol.406
, pp. 775-781
-
-
Walsh, C.1
-
79
-
-
71749098088
-
ELM: the status of the 2010 eukaryotic linear motif resource
-
10.1093/nar/gkp1016, 2808914, 19920119
-
Gould CM, Diella F, Via A, Puntervoll P, Gemund C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, et al. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Res 2010, 38:D167-D180. 10.1093/nar/gkp1016, 2808914, 19920119.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Gould, C.M.1
Diella, F.2
Via, A.3
Puntervoll, P.4
Gemund, C.5
Chabanis-Davidson, S.6
Michael, S.7
Sayadi, A.8
Bryne, J.C.9
Chica, C.10
-
80
-
-
0024414280
-
Lectins as cell recognition molecules
-
10.1126/science.2552581, 2552581
-
Sharon N, Lis H. Lectins as cell recognition molecules. Science 1989, 246:227-234. 10.1126/science.2552581, 2552581.
-
(1989)
Science
, vol.246
, pp. 227-234
-
-
Sharon, N.1
Lis, H.2
-
81
-
-
58049110270
-
A lichen lectin specifically binds to the alpha-1,4-Polygalactoside moiety of urease located in the cell wall of homologous algae
-
10.4161/psb.1.1.2276, 2633696, 19521472
-
Sacristan M, Millanes AM, Legaz ME, Vicente C. A lichen lectin specifically binds to the alpha-1,4-Polygalactoside moiety of urease located in the cell wall of homologous algae. Plant Signal Behav 2006, 1:23-27. 10.4161/psb.1.1.2276, 2633696, 19521472.
-
(2006)
Plant Signal Behav
, vol.1
, pp. 23-27
-
-
Sacristan, M.1
Millanes, A.M.2
Legaz, M.E.3
Vicente, C.4
-
82
-
-
0141951165
-
Lectins as determinants of symbiotic specificity in lichens
-
Galun MKN. Lectins as determinants of symbiotic specificity in lichens. Cryptog Bot 1995, 5:144-148.
-
(1995)
Cryptog Bot
, vol.5
, pp. 144-148
-
-
Galun, M.K.N.1
-
83
-
-
77955969816
-
The cell recognition model in chlorolichens involving a fungal lectin binding to an algal ligand can be extended to cyanolichens
-
Vivas M, Sacristan M, Legaz ME, Vicente C. The cell recognition model in chlorolichens involving a fungal lectin binding to an algal ligand can be extended to cyanolichens. Plant Biol (Stuttg) 2010, 12:615-621.
-
(2010)
Plant Biol (Stuttg)
, vol.12
, pp. 615-621
-
-
Vivas, M.1
Sacristan, M.2
Legaz, M.E.3
Vicente, C.4
-
84
-
-
84865487459
-
Expression of lec-1, a mycobiont gene encoding a galectin-like protein in the lichen Peltigera membranacea
-
Miao VPW, Manoharan SS, Snaebjarnarson V, Andresson OS. Expression of lec-1, a mycobiont gene encoding a galectin-like protein in the lichen Peltigera membranacea. Symbiosis 2012, 57:23-31.
-
(2012)
Symbiosis
, vol.57
, pp. 23-31
-
-
Miao, V.P.W.1
Manoharan, S.S.2
Snaebjarnarson, V.3
Andresson, O.S.4
-
85
-
-
84874942155
-
LEC-2, a highly variable lectin in the lichen
-
10.1007/s13199-012-0206-y, 3589653, 23482294
-
Manoharan SS, Miao VP, Andresson OS. LEC-2, a highly variable lectin in the lichen. Symbiosis 2012, 58:91-98. 10.1007/s13199-012-0206-y, 3589653, 23482294.
-
(2012)
Symbiosis
, vol.58
, pp. 91-98
-
-
Manoharan, S.S.1
Miao, V.P.2
Andresson, O.S.3
-
86
-
-
0003551413
-
-
Orlando: Academic
-
Liener IE, Sharon N, Goldstein IJ. The Lectins: properties, functions, and applications in biology and medicine 1986, Orlando: Academic.
-
(1986)
The Lectins: properties, functions, and applications in biology and medicine
-
-
Liener, I.E.1
Sharon, N.2
Goldstein, I.J.3
-
87
-
-
0027965708
-
Galectins. Structure and function of a large family of animal lectins
-
Barondes SH, Cooper DN, Gitt MA, Leffler H. Galectins. Structure and function of a large family of animal lectins. J Biol Chem 1994, 269:20807-20810.
-
(1994)
J Biol Chem
, vol.269
, pp. 20807-20810
-
-
Barondes, S.H.1
Cooper, D.N.2
Gitt, M.A.3
Leffler, H.4
-
88
-
-
70350050093
-
Trehalose metabolism: from osmoprotection to signaling
-
10.3390/ijms10093793, 2769160, 19865519
-
Iturriaga G, Suarez R, Nova-Franco B. Trehalose metabolism: from osmoprotection to signaling. Int J Mol Sci 2009, 10:3793-3810. 10.3390/ijms10093793, 2769160, 19865519.
-
(2009)
Int J Mol Sci
, vol.10
, pp. 3793-3810
-
-
Iturriaga, G.1
Suarez, R.2
Nova-Franco, B.3
-
89
-
-
47549091250
-
Improvement of drought tolerance and grain yield in common bean by overexpressing trehalose-6-phosphate synthase in rhizobia
-
10.1094/MPMI-21-7-0958, 18533836
-
Suarez R, Wong A, Ramirez M, Barraza A, Orozco Mdel C, Cevallos MA, Lara M, Hernandez G, Iturriaga G. Improvement of drought tolerance and grain yield in common bean by overexpressing trehalose-6-phosphate synthase in rhizobia. Mol Plant Microbe Interact 2008, 21:958-966. 10.1094/MPMI-21-7-0958, 18533836.
-
(2008)
Mol Plant Microbe Interact
, vol.21
, pp. 958-966
-
-
Suarez, R.1
Wong, A.2
Ramirez, M.3
Barraza, A.4
Orozco Mdel, C.5
Cevallos, M.A.6
Lara, M.7
Hernandez, G.8
Iturriaga, G.9
-
90
-
-
0027305174
-
Trehalose-6-Phosphate, a new regulator of yeast glycolysis that inhibits hexokinases
-
10.1016/0014-5793(93)80191-V, 8354408
-
Blazquez MA, Lagunas R, Gancedo C, Gancedo JM. Trehalose-6-Phosphate, a new regulator of yeast glycolysis that inhibits hexokinases. Febs Letters 1993, 329:51-54. 10.1016/0014-5793(93)80191-V, 8354408.
-
(1993)
Febs Letters
, vol.329
, pp. 51-54
-
-
Blazquez, M.A.1
Lagunas, R.2
Gancedo, C.3
Gancedo, J.M.4
-
91
-
-
0029187847
-
Trehalose and trehalase in plants: recent developments
-
Muller J, Boller T, Wiemken A. Trehalose and trehalase in plants: recent developments. Plant Science 1995, 112:1-9.
-
(1995)
Plant Science
, vol.112
, pp. 1-9
-
-
Muller, J.1
Boller, T.2
Wiemken, A.3
-
92
-
-
50949104057
-
Release of trehalose by symbiotic algae
-
Pardy RL, Spargo B, Crowe JH. Release of trehalose by symbiotic algae. Symbiosis 1989, 7:149-158.
-
(1989)
Symbiosis
, vol.7
, pp. 149-158
-
-
Pardy, R.L.1
Spargo, B.2
Crowe, J.H.3
-
93
-
-
36849027292
-
Dissociation and horizontal transmission of codispersing lichen symbionts in the genus Lepraria (Lecanorales: Stereocaulaceae)
-
Nelsen MP, Gargas A. Dissociation and horizontal transmission of codispersing lichen symbionts in the genus Lepraria (Lecanorales: Stereocaulaceae). New Phytol 2008, 177:264-275.
-
(2008)
New Phytol
, vol.177
, pp. 264-275
-
-
Nelsen, M.P.1
Gargas, A.2
-
94
-
-
0000036937
-
Algal switching among lichen symbioses
-
10.2307/3558457, 21669682
-
Piercey-Normore MD, DePriest PT. Algal switching among lichen symbioses. American Journal of Botany 2001, 88:1490-1498. 10.2307/3558457, 21669682.
-
(2001)
American Journal of Botany
, vol.88
, pp. 1490-1498
-
-
Piercey-Normore, M.D.1
DePriest, P.T.2
-
95
-
-
33644863049
-
The lichen-forming ascomycete Evernia mesomorpha associates with multiple genotypes of Trebouxia jamesii
-
10.1111/j.1469-8137.2005.01576.x, 16411936
-
Piercey-Normore MD. The lichen-forming ascomycete Evernia mesomorpha associates with multiple genotypes of Trebouxia jamesii. New Phytol 2006, 169:331-344. 10.1111/j.1469-8137.2005.01576.x, 16411936.
-
(2006)
New Phytol
, vol.169
, pp. 331-344
-
-
Piercey-Normore, M.D.1
-
96
-
-
9244255861
-
Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex
-
Mats Wedin HDGG. Saprotrophy and lichenization as options for the same fungal species on different substrata: environmental plasticity and fungal lifestyles in the Stictis-Conotrema complex. New Phytol 2004, 164:7.
-
(2004)
New Phytol
, vol.164
, pp. 7
-
-
Mats Wedin, H.D.G.G.1
-
97
-
-
84942887758
-
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
-
10.1186/2047-217X-1-1, 3617448, 23587310
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 2012, 1:1-6. 10.1186/2047-217X-1-1, 3617448, 23587310.
-
(2012)
GigaScience
, vol.1
, pp. 1-6
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
He, G.7
Chen, Y.8
Pan, Q.9
Liu, Y.10
-
98
-
-
23144444421
-
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
-
10.1093/nar/gki458, 1160219, 15980513
-
Stanke M, Morgenstern B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res 2005, 33:W465-W467. 10.1093/nar/gki458, 1160219, 15980513.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Stanke, M.1
Morgenstern, B.2
-
99
-
-
0034061137
-
Geneid in drosophila
-
10.1101/gr.10.4.511, 310871, 10779490
-
Parra G, Blanco E, Guigó R. Geneid in drosophila. Genome research 2000, 10:511-515. 10.1101/gr.10.4.511, 310871, 10779490.
-
(2000)
Genome research
, vol.10
, pp. 511-515
-
-
Parra, G.1
Blanco, E.2
Guigó, R.3
-
100
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
10.1101/gr.081612.108, 2593577, 18757608
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome research 2008, 18:1979-1990. 10.1101/gr.081612.108, 2593577, 18757608.
-
(2008)
Genome research
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
101
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
-
10.1186/gb-2008-9-1-r7, 2395244, 18190707
-
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol 2008, 9:R7. 10.1186/gb-2008-9-1-r7, 2395244, 18190707.
-
(2008)
Genome Biol
, vol.9
-
-
Haas, B.J.1
Salzberg, S.L.2
Zhu, W.3
Pertea, M.4
Allen, J.E.5
Orvis, J.6
White, O.7
Buell, C.R.8
Wortman, J.R.9
-
102
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
103
-
-
0036889686
-
Orthology, paralogy and proposed classification for paralog subtypes
-
10.1016/S0168-9525(02)02793-2, 12446146
-
Sonnhammer ELL, Koonin EV. Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet 2002, 18:619-620. 10.1016/S0168-9525(02)02793-2, 12446146.
-
(2002)
Trends Genet
, vol.18
, pp. 619-620
-
-
Sonnhammer, E.L.L.1
Koonin, E.V.2
-
104
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
10.1093/nar/gkh894, 524302, 15486203
-
Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Guldener U, Mannhaupt G, Munsterkotter M, Mewes HW. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 2004, 32:5539-5545. 10.1093/nar/gkh894, 524302, 15486203.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
Mokrejs, M.6
Tetko, I.7
Guldener, U.8
Mannhaupt, G.9
Munsterkotter, M.10
Mewes, H.W.11
-
105
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
10.1093/nar/gkh063, 308797, 14681412
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res 2004, 32:D277-D280. 10.1093/nar/gkh063, 308797, 14681412.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
106
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
10.1093/bioinformatics/17.9.847, 11590104
-
Zdobnov EM, Apweiler R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848. 10.1093/bioinformatics/17.9.847, 11590104.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
107
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
540035, 15608160
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 2005, 33:D121-D124. 540035, 15608160.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
108
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
109
-
-
33846074757
-
Pseudogene. org: a comprehensive database and comparison platform for pseudogene annotation
-
10.1093/nar/gkl851, 1669708, 17099229
-
Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M. Pseudogene. org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Res 2007, 35:D55-D60. 10.1093/nar/gkl851, 1669708, 17099229.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Karro, J.E.1
Yan, Y.2
Zheng, D.3
Zhang, Z.4
Carriero, N.5
Cayting, P.6
Harrrison, P.7
Gerstein, M.8
-
110
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
10.1093/nar/gkm160, 1888812, 17452365
-
Lagesen K, Hallin P, Rødland EA, Stærfeldt H-H, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007, 35:3100-3108. 10.1093/nar/gkm160, 1888812, 17452365.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Stærfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
-
111
-
-
0027968068
-
Clustal-W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
10.1093/nar/22.22.4673, 308517, 7984417
-
Thompson JD, Higgins DG, Gibson TJ. Clustal-W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680. 10.1093/nar/22.22.4673, 308517, 7984417.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
113
-
-
0037314098
-
R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
10.1093/bioinformatics/19.2.301, 12538260
-
Sanderson MJ. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2003, 19:301-302. 10.1093/bioinformatics/19.2.301, 12538260.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
114
-
-
21244505772
-
Fungi evolution revisited: application of the penalized likelihood method to a bayesian fungal phylogeny provides a new perspective on phylogenetic relationships and divergence dates of ascomycota groups
-
10.1007/s00239-004-0164-y, 15909224
-
Padovan ACB, Sanson GFO, Brunstein A, Briones MRS. Fungi evolution revisited: application of the penalized likelihood method to a bayesian fungal phylogeny provides a new perspective on phylogenetic relationships and divergence dates of ascomycota groups. J Mol Evol 2005, 60:726-735. 10.1007/s00239-004-0164-y, 15909224.
-
(2005)
J Mol Evol
, vol.60
, pp. 726-735
-
-
Padovan, A.C.B.1
Sanson, G.F.O.2
Brunstein, A.3
Briones, M.R.S.4
-
115
-
-
33644876458
-
TreeFam: a curated database of phylogenetic trees of animal gene families
-
10.1093/nar/gkj118, 1347480, 16381935
-
Li H, Coghlan A, Ruan J, Coin LJ, Heriche JK, Osmotherly L, Li RQ, Liu T, Zhang Z, Bolund L, et al. TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res 2006, 34:D572-D580. 10.1093/nar/gkj118, 1347480, 16381935.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Li, H.1
Coghlan, A.2
Ruan, J.3
Coin, L.J.4
Heriche, J.K.5
Osmotherly, L.6
Li, R.Q.7
Liu, T.8
Zhang, Z.9
Bolund, L.10
-
116
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
10.1093/nar/30.7.1575, 101833, 11917018
-
Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 2002, 30:1575-1584. 10.1093/nar/30.7.1575, 101833, 11917018.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
117
-
-
84856121183
-
BadiRate: estimating family turnover rates by likelihood-based methods
-
10.1093/bioinformatics/btr623, 22080468
-
Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics 2012, 28:279-281. 10.1093/bioinformatics/btr623, 22080468.
-
(2012)
Bioinformatics
, vol.28
, pp. 279-281
-
-
Librado, P.1
Vieira, F.G.2
Rozas, J.3
-
118
-
-
28844461287
-
Sequencing of Aspergillus nidulans and comparative analysis with A-fumigatus and A-oryzae
-
10.1038/nature04341, 16372000
-
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Basturkmen M, Spevak CC, Clutterbuck J, et al. Sequencing of Aspergillus nidulans and comparative analysis with A-fumigatus and A-oryzae. Nature 2005, 438:1105-1115. 10.1038/nature04341, 16372000.
-
(2005)
Nature
, vol.438
, pp. 1105-1115
-
-
Galagan, J.E.1
Calvo, S.E.2
Cuomo, C.3
Ma, L.J.4
Wortman, J.R.5
Batzoglou, S.6
Lee, S.I.7
Basturkmen, M.8
Spevak, C.C.9
Clutterbuck, J.10
-
119
-
-
0037524441
-
Fatal attraction: Nonself recognition and heterokaryon incompatibility in filamentous fungi
-
10.1128/EC.2.1.1-8.2003, 141178, 12582117
-
Glass NL, Kaneko I. Fatal attraction: Nonself recognition and heterokaryon incompatibility in filamentous fungi. Eukaryot Cell 2003, 2:1-8. 10.1128/EC.2.1.1-8.2003, 141178, 12582117.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 1-8
-
-
Glass, N.L.1
Kaneko, I.2
-
120
-
-
4644337939
-
Characterization of IDI-4, a bZIP transcription factor inducing autophagy and cell death in the fungus Podospora anserina
-
10.1111/j.1365-2958.2004.04235.x, 15341644
-
Dementhon K, Saupe SJ, Clave C. Characterization of IDI-4, a bZIP transcription factor inducing autophagy and cell death in the fungus Podospora anserina. Mol Microbiol 2004, 53:1625-1640. 10.1111/j.1365-2958.2004.04235.x, 15341644.
-
(2004)
Mol Microbiol
, vol.53
, pp. 1625-1640
-
-
Dementhon, K.1
Saupe, S.J.2
Clave, C.3
-
121
-
-
0028229909
-
Inactivation of the podospora-anserina vegetative incompatibility locus Het-C, whose product resembles a glycolipid transfer protein, drastically impairs ascospore production
-
Saupe S, Descamps C, Turcq B, Begueret J. Inactivation of the podospora-anserina vegetative incompatibility locus Het-C, whose product resembles a glycolipid transfer protein, drastically impairs ascospore production. P Natl Acad Sci USA 1994, 91:5927-5931.
-
(1994)
P Natl Acad Sci USA
, vol.91
, pp. 5927-5931
-
-
Saupe, S.1
Descamps, C.2
Turcq, B.3
Begueret, J.4
-
122
-
-
77954265333
-
SBSPKS: structure based sequence analysis of polyketide synthases
-
10.1093/nar/gkq340, 2896141, 20444870
-
Anand S, Prasad MVR, Yadav G, Kumar N, Shehara J, Ansari MZ, Mohanty D. SBSPKS: structure based sequence analysis of polyketide synthases. Nucleic Acids Res 2010, 38:W487-W496. 10.1093/nar/gkq340, 2896141, 20444870.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Anand, S.1
Prasad, M.V.R.2
Yadav, G.3
Kumar, N.4
Shehara, J.5
Ansari, M.Z.6
Mohanty, D.7
-
123
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
research0034, 126239, 12184808
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3:research0034. 126239, 12184808.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
|