Extended focus imaging in digital holographic microscopy: A review

Optical Engineering

Volumn 53, Issue 11, 2014, Pages

  Matrecano, Marcella ^a   Paturzo, Melania ^a   Ferraro, Pietro ^a  

^a ISTITUTO NAZIONALE DI OTTICA   (Italy)

Author keywords

cubic phase plate; depth of focus; digital holography; extended focus image; microscopy; sectioning and merging

Indexed keywords

COMPUTER GENERATED HOLOGRAPHY; MERGING; MICROSCOPIC EXAMINATION; NUMERICAL METHODS; HOLOGRAPHY;

CUBIC PHASE; DEPTH OF FOCUS; DIGITAL HOLOGRAPHIC MICROSCOPY; DIGITAL HOLOGRAPHY; EXTENDED FOCUS IMAGE; HOLOGRAPHIC SYSTEM; MULTIPLANE IMAGING; RECONSTRUCTION TECHNIQUES;

HOLOGRAMS;

EID: 84921471954     PISSN: 00913286     EISSN: 15602303     Source Type: Journal    
DOI: 10.1117/1.OE.53.11.112317     Document Type: Article

References (83)

1. G. Häusler, "A method to increase the depth of focus by two step image processing, " Opt. Commun. 6(1), 38-42 (1972).
2. R. J. Pieper and A. Korpel, "Image processing for extended depth of field, " Appl. Opt. 22(10), 1449 (1983).
3. V. Tympel, "New high-level image capture system for conventional light microscopy, " Proc. SPIE 2707, 529-536 (1996).
4. V. Tympel, "Three-dimensional animation with conventional light microscopy, " Proc. SPIE 2984, 190-198 (1997).
5. S. Sugimoto and Y. Ichioka, "Digital composition of images with increased depth of focus considering depth information, " Appl. Opt. 24(14), 2076-2080 (1985).
6. B. Willis et al., "Developments in three-dimensional stereo brightfield microscopy, " Microsc. Res. Tech. 24(5), 437-451 (1993). (Pubitemid 23091447)
7. A. G. Valdecasas et al., "On the extended depth of focus algorithms for bright field microscopy, " Micron 32(6), 559-569 (2001). (Pubitemid 32247495)
8. E. Dowski and W. Cathey, "Extended depth of field through wavefront coding, " Appl. Opt. 34(11), 1859-1866 (1995).
9. S. Bradburn, W. T. Cathey, and E. R. Dowski, "Realizations of focus invariance in optical-digital systems with wave-front coding, " Appl. Opt. 36(35), 9157-9166 (1997). (Pubitemid 127688121)
10. S. Sherif, W. Cathey, and E. R. Dowski, "Phase plate to extend the depth of field of incoherent hybrid imaging systems, " Appl. Opt. 43(13), 2709-2721 (2004).
11. J. Wang et al., "Improved sinusoidal phase plate to extend depth of field in incoherent hybrid imaging systems, " Opt. Lett. 37(21), 4534-4536 (2012).
12. J. Wang et al., "Enhanced depth of field in integral imaging for 3D display with a cubic phase plate coded camera array, " J. Disp. Technol. 8(10), 577-581 (2012).
13. J. Goodman, Introduction to Fourier Optics, McGraw-Hill, New York, NY (1996).
14. T. Kreis and W. Jüptner, "Principles of digital holography, " in 3rd Int. Workshop on Automatic Processing of Fringe Patterns, W. Jüptner and W. Osten, Eds., Vol. 3, pp. 353-363, Akademie Verlag (1997).
15. T. H. Demetrakopoulos and R. Mittra, "Digital and optical reconstruction of images from suboptical diffraction patterns, " Appl. Opt. 13(3), 665 (1974).
16. J. Ratcliffe, "Some aspects of diffraction theory and their application to the ionosphere, " Reports Prog. Phys. 19(1), 188 (1956).
17. M. Kim and L. Yu, "Interference techniques in digital holography, " J. Opt. A Pure Appl. Opt. 8(7), S518 (2006).
18. U. Schnars andW. Jüptner, "Digital recording and numerical reconstruction of holograms, " Meas. Sci. Technol. 13(9), R85-R101 (2002).
19. W. S. Haddad et al., "Fourier-transform holographic microscope, " Appl. Opt. 31(24), 4973 (1992).
20. P. Ferraro et al., "Extended focused image in microscopy by digital holography, " Opt. Express 13(18), 6738-6749 (2005). (Pubitemid 41305545)
21. P. Ferraro et al., "Controlling image size as a function of distance and wavelength in Fresnel-transform reconstruction of digital holograms, " Opt. Lett. 29(8), 854-856 (2004).
22. T. Colomb et al., "Extended depth-of-focus by digital holographic microscopy, " Opt. Lett. 35(11), 1840-1842 (2010).
23. M. Matrecano, M. Paturzo, and P. Ferraro, "Tilted objects EFI extracted at once by 3D output of the angular spectrum method, " Opt. Lasers Eng. 51(12), 1353-1359 (2013).
24. C. M. Do et al., "Multi-wavelength holographic image fusions using discrete wavelet transform, " Proc. SPIE 6016, 60160Z (2005).
25. B. Javidi et al., "Multi-spectral holographic three-dimensional image fusion using discrete wavelet transform, " J. Disp. Technol. 2(4), 411-417 (2006). (Pubitemid 44955843)
26. C. M. Do and B. Javidi, "Multifocus holographic 3-D image fusion using independent component analysis, " J. Disp. Technol. 3(3), 326-332 (2007). (Pubitemid 47295216)
27. T. Kim, "Optical sectioning by optical scanning holography and a Wiener filter, " Appl. Opt. 45(5), 872 (2006).
28. X. Zhang, E. Y. Lam, and T.-C. Poon, "Reconstruction of sectional images in holography using inverse imaging, " Opt. Express 16(22), 17215 (2008).
29. X. Zhang et al., "Blind sectional image reconstruction for optical scanning holography, " Opt. Lett. 34(20), 3098-3100 (2009).
30. C. P. Mc Elhinney et al., "Extraction of three-dimensional shape information from a digital hologram, " Proc. SPIE 5908, 590805 (2005).
31. M. L. Tachiki, M. Itoh, and T. Yatagai, "Simultaneous depth determination of multiple objects by focus analysis in digital holography, " Appl. Opt. 47(19), D144 (2008).
32. C. P. Mc Elhinney, B. M. Hennelly, and T. J. Naughton, "Extended focused imaging for digital holograms of macroscopic three-dimensional objects, " Appl. Opt. 47(19), D71 (2008).
33. M. Antkowiak et al., "Extended focused imaging of a microparticle field with digital holographic microscopy, " Opt. Lett. 33(14), 1626-1628 (2008).
34. L. Yu and L. Cai, "Iterative algorithm with a constraint condition for numerical reconstruction of a three-dimensional object from its hologram, " J. Opt. Soc. Am. A 18(5), 1033 (2001).
35. J. Gillespie and R. A. King, "The use of self-entropy as a focus measure in digital holography, " Pattern Recognit. Lett. 9(1), 19-25 (1989).
36. J. P. Ryle et al., "Calibration of a digital in-line holographic microscopy system: depth of focus and bioprocess analysis, " Appl. Opt. 52(7), C78 (2013).
37. L. Ma et al., "Numerical reconstruction of digital holograms for threedimensional shape measurement, " J. Opt. A Pure Appl. Opt. 6(4), 396-400 (2004).
38. W. Li et al., "Focus detection from digital in-line holograms based on spectral l-1 norms, " J. Opt. Soc. Am. A 24(10), 3054 (2007).
39. M. Liebling and M. Unser, "Autofocus for digital Fresnel holograms by use of a Fresnelet-sparsity criterion, " J. Opt. Soc. Am. A 21(12), 2424 (2004).
40. T. Pitkäaho and T. J. Naughton, "Calculating depth maps from digital holograms using stereo disparity, " Opt. Lett. 36(11), 2035-2037 (2011).
41. I. Bergoënd, T. Colomb, and N. Pavillon, "Depth-of-field extension and 3D reconstruction in digital holographic microscopy, " Proc. SPIE 7390, 73901C (2009).
42. W. Ortyn, D. Perry, and V. Venkatachalam, "Extended depth of field imaging for high speed cell analysis, " Cytometry A 71A(4), 215-231 (2007). (Pubitemid 46581283)
43. M. McGuire, W. Matusik, and H. Pfister, "Optical splitting trees for high-precision monocular imaging, " Comput. Graph. 27(2), 32-42 (2007). (Pubitemid 46523116)
44. P. P. M. Blanchard and A. A. H. Greenaway, "Simultaneous multiplane imaging with a distorted diffraction grating, " Appl. Opt. 38(32), 6692 (1999).
45. S. De Nicola et al., "Reflective grating interferometer: a folded reversal wave-front interferometer, " Appl. Opt. 38(22), 4845 (1999).
46. J. A. Ferrari, E. Garbusi, and E. M. Frins, "Linear focusing by a plane grating with curved grooves, " Appl. Opt. 43(28), 5350 (2004).
47. P. A. Dalgarno et al., "Multiplane imaging and three dimensional nanoscale particle tracking in biological microscopy, " Opt. Express 18(2), 877 (2010).
48. C. Maurer et al., "Depth of field multiplexing in microscopy, " Opt. Express 18(3), 3023-3034 (2010).
49. A. Jesacher, C. Roider, and M. Ritsch-Marte, "Enhancing diffractive multi-plane microscopy using colored illumination, " Opt. Express 21(9), 3893-3901 (2013).
50. M. Paturzo and A. Finizio, "Simultaneous multiplane imaging in digital holographic microscopy, " J. Disp. Technol. 7(1), 24-28 (2011).
51. W. Pan, "Multiplane imaging and depth-of-focus extending in digital holography by a single-shot digital hologram, " Opt. Commun. 286(1), 117-122 (2013).
52. L. Onural, "Impulse functions over curves and surfaces and their applications to diffraction, " J. Math. Anal. Appl. 322(1), 18-27 (2006). (Pubitemid 43733384)
53. T. Latychevskaia, F. Gehri, and H.-W. Fink, "Depth-resolved holographic reconstructions by three-dimensional deconvolution, " Opt. Express 18(21), 22527-22544 (2010).
54. L. Dixon, F. C. Cheong, and D. G. Grier, "Holographic deconvolution microscopy for high-resolution particle tracking, " Opt. Express 19(17), 16410 (2011).
55. N. Pégard and J. Fleischer, "3D microfluidic microscopy using a tilted channel, " in Biomedical Optics, pp. 4-6, Optical Society of America (2012).
56. Y. Cotte et al., "Realistic 3D coherent transfer function inverse filtering of complex fields, " Biomed. Opt. Express 2(8), 2216-2230 (2011).
57. N. Koukourakis et al., "Single-shot holography for depth resolved three dimensional imaging, " Opt. Express 17(23), 21015-21029 (2009).
58. D. Leseberg and C. Frère, "Computer-generated holograms of 3-D objects composed of tilted planar segments, " Appl. Opt. 27(14), 3020 (1988).
59. N. Delen, "Free-space beam propagation between arbitrarily oriented planes based on full diffraction theory: a fast Fourier transform approach, " JOSA A 15(4), 857-867 (1998). (Pubitemid 128572084)
60. L. Yu, Y. An, and L. Cai, "Numerical reconstruction of digital holograms with variable viewing angles, " Opt. Express 10(22), 1250 (2002).
61. T. Tommasi and B. Bianco, "Frequency analysis of light diffraction between rotated planes, " Opt. Lett. 17(8), 556 (1992).
62. S. De Nicola et al., "Angular spectrum method with correction of anamorphism for numerical reconstruction of digital holograms on tilted planes, " Opt. Express 13(24), 9935-9940 (2005). (Pubitemid 41692766)
63. K. Matsushima, "Formulation of the rotational transformation of wave fields and their application to digital holography, " Appl. Opt. 47(19), D110-116 (2008).
64. S. J. Jeong and C. K. Hong, "Pixel-size-maintained image reconstruction of digital holograms on arbitrarily tilted planes by the angular spectrum method, " Appl. Opt. 47(16), 3064-3071 (2008).
65. W. M. Ash and M. K. Kim, "Digital holography of total internal reflection, " Opt. Express 16(13), 9811 (2008).
66. W. M. Ash, L. Krzewina, and M. K. Kim, "Quantitative imaging of cellular adhesion by total internal reflection holographic microscopy, " Appl. Opt. 48(34), H144-152 (2009).
67. N. Akhter and K.-S. Kim, "Reconstruction of digital hologram of small particles on arbitrarily tilted plane using digital holography, " Opt. Commun. 283(24), 5107-5110 (2010).
68. L. Onural, "Exact solution for scalar diffraction between tilted and translated planes using impulse functions over a surface, " JOSA A 28(3), 290-295 (2011).
69. D. Lebrun et al., "Particle field digital holographic reconstruction in arbitrary tilted planes, " Opt. Express 11(3), 224-229 (2003).
70. F. Schlichthaber, G. von Bally, and B. Kemper, "Influence of Fresnel diffraction on numerical propagation and correction of tilted image planes in digital holographic microscopy, " Proc. SPIE 8430, 843003 (2012).
71. K. Yamamoto et al., "Calculating the Fresnel diffraction of light from a shifted and tilted plane, " Opt. Express 20(12), 12949 (2012).
72. W. Pan and Y. Zhu, "Fresnel diffraction method with object wave rotation for numerical reconstruction of digital hologram on tilted plane, " Opt. J. Light Electron Opt. 124(20), 4328-4330 (2013).
73. L. Wang et al., "Fast extended focused imaging in digital holography using a graphics processing unit, " Opt. Lett. 36(9), 1620 (2011).
74. J. Kostencka, T. Kozacki, and K. Lizewski, "Autofocusing method for tilted image plane detection in digital holographic microscopy, " Opt. Commun. 297(1), 20-26 (2013).
75. T. Kozacki, K. Lizewski, and J. Kostencka, "Holographic method for topography measurement of highly tilted and high numerical aperture micro structures, " Opt. Laser Technol. 49(1), 38-46 (2013).
76. J. Wang et al., "Improved sinusoidal phase plate to extend depth of field in incoherent hybrid imaging systems, " Opt. Lett. 37(21), 4534-4536 (2012).
77. S. Quirin, D. Peterka, and R. Yuste, "Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging, " Opt. Express 21(13), 16007-16021 (2013).
78. M. Matrecano et al., "Enhancing depth of focus in tilted microfluidics channels by digital holography, " Opt. Lett. 38(6), 896-898 (2013).
79. P. Memmolo, G. Di Caprio, and C. Distante, "Identification of bovine sperm head for morphometry analysis in quantitative phase-contrast holographic microscopy, " Opt. Express 19(23), 23215-23226 (2011).
80. P. Ferraro et al., "Dispensing nano-pico droplets and liquid patterning by pyroelectrodynamic shooting, " Nat. Nanotechnol. 5(6), 429-435 (2010).
81. P. Ferraro et al., "Controlling depth of focus in 3D image reconstructions by flexible and adaptive deformation of digital holograms, " Opt. Lett. 34(18), 2787-2789 (2009).
82. M. Paturzo and P. Ferraro, "Creating an extended focus image of a tilted object in Fourier digital holography, " Opt. Express 17(22), 20546-20552 (2009).
83. M. Paturzo et al., "Synthesis and display of dynamic holographic 3D scenes with real-world objects, " Opt. Express 18(9), 8806-8815 (2010).