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Volumn 89, Issue 2, 2015, Pages 1043-1057

Complete genome characterization of recent and ancient Belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP1; PROTEIN VP2; PROTEIN VP3; PROTEIN VP4; PROTEIN VP7; VIRUS PROTEIN; VIRUS RNA;

EID: 84920767648     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.02513-14     Document Type: Article
Times cited : (47)

References (49)
  • 1
    • 84903469186 scopus 로고    scopus 로고
    • Porcine group A rotaviruses with heterogeneous VP7 and VP4 genotype combinations can be found together with enteric bacteria on Belgian swine farms
    • Theuns S, Desmarets LM, Heylen E, Zeller M, Dedeurwaerder A, Roukaerts ID, Van Ranst M, Matthijnssens J, Nauwynck HJ. 2014. Porcine group A rotaviruses with heterogeneous VP7 and VP4 genotype combinations can be found together with enteric bacteria on Belgian swine farms. Vet Microbiol 172:23-34. http://dx.doi.org/10.1016/j.vetmic.2014.04.002.
    • (2014) Vet Microbiol , vol.172 , pp. 23-34
    • Theuns, S.1    Desmarets, L.M.2    Heylen, E.3    Zeller, M.4    Dedeurwaerder, A.5    Roukaerts, I.D.6    Van Ranst, M.7    Matthijnssens, J.8    Nauwynck, H.J.9
  • 2
    • 84861788850 scopus 로고    scopus 로고
    • VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation
    • Matthijnssens J, Otto PH, Ciarlet M, Desselberger U, Van Ranst M, Johne R. 2012. VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 157:1177-1182. http://dx.doi.org/10.1007/s00705-012-1273-3.
    • (2012) Arch Virol , vol.157 , pp. 1177-1182
    • Matthijnssens, J.1    Otto, P.H.2    Ciarlet, M.3    Desselberger, U.4    Van Ranst, M.5    Johne, R.6
  • 3
    • 0028332838 scopus 로고
    • Nongroup A rotaviruses of humans and animals
    • Saif LJ, Jiang B. 1994. Nongroup A rotaviruses of humans and animals. Curr Top Microbiol Immunol 185:339-371.
    • (1994) Curr Top Microbiol Immunol , vol.185 , pp. 339-371
    • Saif, L.J.1    Jiang, B.2
  • 9
    • 84871296795 scopus 로고    scopus 로고
    • Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses
    • Trojnar E, Sachsenroder J, Twardziok S, Reetz J, Otto PH, Johne R. 2013. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136-142. http://dx.doi.org/10.1099/vir.0.047381-0.
    • (2013) J Gen Virol , vol.94 , pp. 136-142
    • Trojnar, E.1    Sachsenroder, J.2    Twardziok, S.3    Reetz, J.4    Otto, P.H.5    Johne, R.6
  • 12
    • 0018512827 scopus 로고
    • Experimental infection of pigs with Belgian isolates of the porcine rotavirus
    • Debouck P, Pensaert M. 1979. Experimental infection of pigs with Belgian isolates of the porcine rotavirus. Zentralbl Veterinarmed B 26:517-526.
    • (1979) Zentralbl Veterinarmed B , vol.26 , pp. 517-526
    • Debouck, P.1    Pensaert, M.2
  • 15
    • 84865117926 scopus 로고    scopus 로고
    • Genotype constellation and evolution of group A rotaviruses infecting humans
    • Matthijnssens J, Van Ranst M. 2012. Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2:426-433. http://dx.doi.org/10.1016/j.coviro.2012.04.007.
    • (2012) Curr Opin Virol , vol.2 , pp. 426-433
    • Matthijnssens, J.1    Van Ranst, M.2
  • 17
    • 84872194745 scopus 로고    scopus 로고
    • Full-length genome analysis of G2, G9 and G11 porcine group A rotaviruses
    • Martel-Paradis O, Laurin MA, Martella V, Sohal JS, L'Homme Y. 2013. Full-length genome analysis of G2, G9 and G11 porcine group A rotaviruses. Vet Microbiol 162:94-102. http://dx.doi.org/10.1016/j.vetmic.2012.08.028.
    • (2013) Vet Microbiol , vol.162 , pp. 94-102
    • Martel-Paradis, O.1    Laurin, M.A.2    Martella, V.3    Sohal, J.S.4    L'Homme, Y.5
  • 18
    • 84899563727 scopus 로고    scopus 로고
    • Full-length genomic analysis of porcine rotavirus strains isolated from pigs with diarrhea in northern Italy
    • Monini M, Zaccaria G, Ianiro G, Lavazza A, Vaccari G, Ruggeri FM. 2014. Full-length genomic analysis of porcine rotavirus strains isolated from pigs with diarrhea in northern Italy. Infect Genet Evol 25:4-13. http://dx.doi.org/10.1016/j.meegid.2014.03.024.
    • (2014) Infect Genet Evol , vol.25 , pp. 4-13
    • Monini, M.1    Zaccaria, G.2    Ianiro, G.3    Lavazza, A.4    Vaccari, G.5    Ruggeri, F.M.6
  • 19
    • 84879370578 scopus 로고    scopus 로고
    • Whole-genomic analysis of G3P[23], G9P[23] and G3P[13] rotavirus strains isolated from piglets with diarrhea in Thailand, 2006-2008
    • Okitsu S, Khamrin P, Thongprachum A, Kongkaew A, Maneekarn N, Mizuguchi M, Hayakawa S, Ushijima H. 2013. Whole-genomic analysis of G3P[23], G9P[23] and G3P[13] rotavirus strains isolated from piglets with diarrhea in Thailand, 2006-2008. Infect Genet Evol 18:74-86. http://dx.doi.org/10.1016/j.meegid.2013.05.005.
    • (2013) Infect Genet Evol , vol.18 , pp. 74-86
    • Okitsu, S.1    Khamrin, P.2    Thongprachum, A.3    Kongkaew, A.4    Maneekarn, N.5    Mizuguchi, M.6    Hayakawa, S.7    Ushijima, H.8
  • 20
    • 84865389252 scopus 로고    scopus 로고
    • Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium
    • Zeller M, Heylen E, De Coster S, Van Ranst M, Matthijnssens J. 2012. Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium. Infect Genet Evol 12:1492-1500. http://dx.doi.org/10.1016/j.meegid.2012.03.002.
    • (2012) Infect Genet Evol , vol.12 , pp. 1492-1500
    • Zeller, M.1    Heylen, E.2    De Coster, S.3    Van Ranst, M.4    Matthijnssens, J.5
  • 21
    • 0026590701 scopus 로고
    • Cloning of noncultivatable human rotavirus by single primer amplification
    • Lambden PR, Cooke SJ, Caul EO, Clarke IN. 1992. Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817-1822.
    • (1992) J Virol , vol.66 , pp. 1817-1822
    • Lambden, P.R.1    Cooke, S.J.2    Caul, E.O.3    Clarke, I.N.4
  • 22
    • 72449136215 scopus 로고    scopus 로고
    • RotaC: a Webbased tool for the complete genome classification of group A rotaviruses
    • Maes P, Matthijnssens J, Rahman M, Van Ranst M. 2009. RotaC: a Webbased tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238. http://dx.doi.org/10.1186/1471-2180-9-238.
    • (2009) BMC Microbiol , vol.9 , pp. 238
    • Maes, P.1    Matthijnssens, J.2    Rahman, M.3    Van Ranst, M.4
  • 23
    • 67149095009 scopus 로고    scopus 로고
    • Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab
    • Aoki ST, Settembre EC, Trask SD, Greenberg HB, Harrison SC, Dormitzer PR. 2009. Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab. Science 324:1444-1447. http://dx.doi.org/10.1126/science.1170481.
    • (2009) Science , vol.324 , pp. 1444-1447
    • Aoki, S.T.1    Settembre, E.C.2    Trask, S.D.3    Greenberg, H.B.4    Harrison, S.C.5    Dormitzer, P.R.6
  • 26
    • 77957847866 scopus 로고    scopus 로고
    • Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32]
    • Collins PJ, Martella V, Buonavoglia C, O'Shea H. 2010. Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32]. Vet Res 41:73. http://dx.doi.org/10.1051/vetres/2010045.
    • (2010) Vet Res , vol.41 , pp. 73
    • Collins, P.J.1    Martella, V.2    Buonavoglia, C.3    O'Shea, H.4
  • 27
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens J, Heylen E, Zeller M, Rahman M, Lemey P, Van Ranst M. 2010. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol Biol Evol 27:2431-2436. http://dx.doi.org/10.1093/molbev/msq137.
    • (2010) Mol Biol Evol , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    Van Ranst, M.6
  • 28
    • 84866269118 scopus 로고    scopus 로고
    • Rotavirus VP8*: phylogeny, host range, and interaction with histo-blood group antigens
    • Liu Y, Huang P, Tan M, Liu Y, Biesiada J, Meller J, Castello AA, Jiang B, Jiang X. 2012. Rotavirus VP8*: phylogeny, host range, and interaction with histo-blood group antigens. J Virol 86:9899-9910. http://dx.doi.org/10.1128/JVI.00979-12.
    • (2012) J Virol , vol.86 , pp. 9899-9910
    • Liu, Y.1    Huang, P.2    Tan, M.3    Liu, Y.4    Biesiada, J.5    Meller, J.6    Castello, A.A.7    Jiang, B.8    Jiang, X.9
  • 29
    • 84861309287 scopus 로고    scopus 로고
    • Spike protein VP8* of human rotavirus recognizes histo-blood group antigens in a type-specific manner
    • Huang P, Xia M, Tan M, Zhong W, Wei C, Wang L, Morrow A, Jiang X. 2012. Spike protein VP8* of human rotavirus recognizes histo-blood group antigens in a type-specific manner. J Virol 86:4833-4843. http://dx.doi.org/10.1128/JVI.05507-11.
    • (2012) J Virol , vol.86 , pp. 4833-4843
    • Huang, P.1    Xia, M.2    Tan, M.3    Zhong, W.4    Wei, C.5    Wang, L.6    Morrow, A.7    Jiang, X.8
  • 30
    • 0036196680 scopus 로고    scopus 로고
    • Initial interaction of rotavirus strains with N-acetylneuraminic (sialic) acid residues on the cell surface correlates with VP4 genotype, not species of origin
    • Ciarlet M, Ludert JE, Iturriza-Gomara M, Liprandi F, Gray JJ, Desselberger U, Estes MK. 2002. Initial interaction of rotavirus strains with N-acetylneuraminic (sialic) acid residues on the cell surface correlates with VP4 genotype, not species of origin. J Virol 76:4087-4095. http://dx.doi.org/10.1128/JVI.76.8.4087-4095.2002.
    • (2002) J Virol , vol.76 , pp. 4087-4095
    • Ciarlet, M.1    Ludert, J.E.2    Iturriza-Gomara, M.3    Liprandi, F.4    Gray, J.J.5    Desselberger, U.6    Estes, M.K.7
  • 31
    • 55549113560 scopus 로고    scopus 로고
    • Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions
    • Heiman EM, McDonald SM, Barro M, Taraporewala ZF, Bar-Magen T, Patton JT. 2008. Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82: 11106-11116. http://dx.doi.org/10.1128/JVI.01402-08.
    • (2008) J Virol , vol.82 , pp. 11106-11116
    • Heiman, E.M.1    McDonald, S.M.2    Barro, M.3    Taraporewala, Z.F.4    Bar-Magen, T.5    Patton, J.T.6
  • 33
    • 80053484777 scopus 로고    scopus 로고
    • Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC
    • McDonald SM, Davis K, McAllen JK, Spiro DJ, Patton JT. 2011. Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC. Infect Genet Evol 11:1586-1594. http://dx.doi.org/10.1016/j.meegid.2011.05.023.
    • (2011) Infect Genet Evol , vol.11 , pp. 1586-1594
    • McDonald, S.M.1    Davis, K.2    McAllen, J.K.3    Spiro, D.J.4    Patton, J.T.5
  • 34
    • 84920786988 scopus 로고    scopus 로고
    • Analysis of human rotaviruses from a single location over an 18-year time span suggests that protein coadaption influences gene constellations
    • Zhang S, McDonald PW, Thompson TA, Dennis AF, Akopov A, Kirkness EF, Patton JT, McDonald SM. 2014. Analysis of human rotaviruses from a single location over an 18-year time span suggests that protein coadaption influences gene constellations. J Virol 88:9842-9863. http://dx.doi.org/10.1128/JVI.01562-14.
    • (2014) J Virol , vol.88 , pp. 9842-9863
    • Zhang, S.1    McDonald, P.W.2    Thompson, T.A.3    Dennis, A.F.4    Akopov, A.5    Kirkness, E.F.6    Patton, J.T.7    McDonald, S.M.8
  • 35
    • 84874577885 scopus 로고    scopus 로고
    • Annual changes in predominant genotypes of rotavirus A detected in the feces of pigs in various developmental stages raised on a conventional farm
    • Miyazaki A, Kuga K, Suzuki T, Kohmoto M, Katsuda K, Tsunemitsu H. 2013. Annual changes in predominant genotypes of rotavirus A detected in the feces of pigs in various developmental stages raised on a conventional farm. Vet Microbiol 163:162-166. http://dx.doi.org/10.1016/j.vetmic.2012.11.044.
    • (2013) Vet Microbiol , vol.163 , pp. 162-166
    • Miyazaki, A.1    Kuga, K.2    Suzuki, T.3    Kohmoto, M.4    Katsuda, K.5    Tsunemitsu, H.6
  • 36
    • 84862087725 scopus 로고    scopus 로고
    • Analysis of the excretion dynamics and genotypic characteristics of rotavirusAduring the lives of pigs raised on farms for meat production
    • Miyazaki A, Kuga K, Suzuki T, Tsunemitsu H. 2012. Analysis of the excretion dynamics and genotypic characteristics of rotavirusAduring the lives of pigs raised on farms for meat production. J Clin Microbiol 50: 2009-2017. http://dx.doi.org/10.1128/JCM.06815-11.
    • (2012) J Clin Microbiol , vol.50 , pp. 2009-2017
    • Miyazaki, A.1    Kuga, K.2    Suzuki, T.3    Tsunemitsu, H.4
  • 37
    • 0027478787 scopus 로고
    • Murine rotavirus genes encoding outer capsid proteins VP4 and VP7 are not major determinants of host range restriction and virulence
    • Broome RL, Vo PT, Ward RL, Clark HF, Greenberg HB. 1993. Murine rotavirus genes encoding outer capsid proteins VP4 and VP7 are not major determinants of host range restriction and virulence. J Virol 67:2448-2455.
    • (1993) J Virol , vol.67 , pp. 2448-2455
    • Broome, R.L.1    Vo, P.T.2    Ward, R.L.3    Clark, H.F.4    Greenberg, H.B.5
  • 38
    • 84880597984 scopus 로고    scopus 로고
    • Permissive replication of homologous murine rotavirus in the mouse intestine is primarily regulated by VP4 and NSP1
    • Feng N, Yasukawa LL, Sen A, Greenberg HB. 2013. Permissive replication of homologous murine rotavirus in the mouse intestine is primarily regulated by VP4 and NSP1. J Virol 87:8307-8316. http://dx.doi.org/10.1128/JVI.00619-13.
    • (2013) J Virol , vol.87 , pp. 8307-8316
    • Feng, N.1    Yasukawa, L.L.2    Sen, A.3    Greenberg, H.B.4
  • 39
    • 84875062319 scopus 로고    scopus 로고
    • The battle between rotavirus and its host for control of the interferon signaling pathway
    • Arnold MM, Sen A, Greenberg HB, Patton JT. 2013. The battle between rotavirus and its host for control of the interferon signaling pathway. PLoS Pathog 9:e1003064. http://dx.doi.org/10.1371/journal.ppat.1003064.
    • (2013) PLoS Pathog , vol.9
    • Arnold, M.M.1    Sen, A.2    Greenberg, H.B.3    Patton, J.T.4
  • 41
    • 84903386046 scopus 로고    scopus 로고
    • Rotavirus surveillance in Kisangani, the Democratic Republic of the Congo, reveals a high number of unusual genotypes and gene segments of animal origin in non-vaccinated symptomatic children
    • Heylen E, Batoko Likele B, Zeller M, Stevens S, De Coster S, Conceicao-Neto N, Van Geet C, Jacobs J, Ngbonda D, Van Ranst M, Matthijnssens J. 2014. Rotavirus surveillance in Kisangani, the Democratic Republic of the Congo, reveals a high number of unusual genotypes and gene segments of animal origin in non-vaccinated symptomatic children. PLoS One 9:e100953. http://dx.doi.org/10.1371/journal.pone.0100953.
    • (2014) PLoS One , vol.9
    • Heylen, E.1    Batoko Likele, B.2    Zeller, M.3    Stevens, S.4    De Coster, S.5    Conceicao-Neto, N.6    Van Geet, C.7    Jacobs, J.8    Ngbonda, D.9    Van Ranst, M.10    Matthijnssens, J.11
  • 42
    • 0033059194 scopus 로고    scopus 로고
    • Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3
    • Piron M, Delaunay T, Grosclaude J, Poncet D. 1999. Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3. J Virol 73:5411-5421.
    • (1999) J Virol , vol.73 , pp. 5411-5421
    • Piron, M.1    Delaunay, T.2    Grosclaude, J.3    Poncet, D.4
  • 43
    • 0032190508 scopus 로고    scopus 로고
    • Rotavirus RNA-binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F
    • Piron M, Vende P, Cohen J, Poncet D. 1998. Rotavirus RNA-binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F. EMBOJ 17:5811-5821. http://dx.doi.org/10.1093/emboj/17.19.5811.
    • (1998) EMBOJ , vol.17 , pp. 5811-5821
    • Piron, M.1    Vende, P.2    Cohen, J.3    Poncet, D.4
  • 44
    • 77953297146 scopus 로고    scopus 로고
    • Rearranged genomic RNA segments offer a new approach to the reverse genetics of rotaviruses
    • Troupin C, Dehee A, Schnuriger A, Vende P, Poncet D, Garbarg-Chenon A. 2010. Rearranged genomic RNA segments offer a new approach to the reverse genetics of rotaviruses. J Virol 84:6711-6719. http://dx.doi.org/10.1128/JVI.00547-10.
    • (2010) J Virol , vol.84 , pp. 6711-6719
    • Troupin, C.1    Dehee, A.2    Schnuriger, A.3    Vende, P.4    Poncet, D.5    Garbarg-Chenon, A.6
  • 46
    • 0023130418 scopus 로고
    • Serum antibody responses to individual viral polypeptides in human rotavirus infections
    • Svensson L, Sheshberadaran H, Vene S, Norrby E, Grandien M, Wadell G. 1987. Serum antibody responses to individual viral polypeptides in human rotavirus infections. J Gen Virol 68:643-651. http://dx.doi.org/10.1099/0022-1317-68-3-643.
    • (1987) J Gen Virol , vol.68 , pp. 643-651
    • Svensson, L.1    Sheshberadaran, H.2    Vene, S.3    Norrby, E.4    Grandien, M.5    Wadell, G.6
  • 47
    • 79851471497 scopus 로고    scopus 로고
    • Immune responses to rotavirus infection and vaccination and associated correlates of protection
    • Desselberger U, Huppertz HI. 2011. Immune responses to rotavirus infection and vaccination and associated correlates of protection. J Infect Dis 203:188-195. http://dx.doi.org/10.1093/infdis/jiq031.
    • (2011) J Infect Dis , vol.203 , pp. 188-195
    • Desselberger, U.1    Huppertz, H.I.2
  • 49
    • 84867140537 scopus 로고    scopus 로고
    • Molecular characterization of a rare G9P[23] porcine rotavirus isolate from China
    • Shi H, Chen J, Li H, Sun D, Wang C, Feng L. 2012. Molecular characterization of a rare G9P[23] porcine rotavirus isolate from China. Arch Virol 157:1897-1903. http://dx.doi.org/10.1007/s00705-012-1363-2.
    • (2012) Arch Virol , vol.157 , pp. 1897-1903
    • Shi, H.1    Chen, J.2    Li, H.3    Sun, D.4    Wang, C.5    Feng, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.