Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3

Journal of Virology

Volumn 73, Issue 7, 1999, Pages 5411-5421

  Piron, Maria ^a   Delaunay, Thierry ^a   Grosclaude, Jeanne ^a   Poncet, Didier ^a  

^a CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DIMER; INITIATION FACTOR; INITIATION FACTOR 4GI; NONSTRUCTURAL PROTEIN 3; POLYADENYLATED RNA; PROTEIN SUBUNIT; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; VIRUS MESSENGER RNA;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DIMERIZATION; DISULFIDE BOND; ESCHERICHIA COLI; MOLECULAR DYNAMICS; NONHUMAN; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; ROTAVIRUS; SITE DIRECTED MUTAGENESIS; STRUCTURE ACTIVITY RELATION;

EID: 0033059194     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.73.7.5411-5421.1999     Document Type: Article

References (54)

1. Aponte, C., N. M. Mattion, M. K. Estes, A. Charpilienne, and J. Cohen. 1993. Expression of two bovine rotavirus non-structural proteins (NSP2, NSP3) in the baculovirus system and production of monoclonal antibodies directed against the expressed proteins. Arch. Virol. 133:85-95.
2. Beelman, C. A., and R. Parker. 1995. Degradation of mRNA in eukaryotes. Cell 81:179-183.
3. Birney, E., S. Kumar, and A. R. Krainer. 1993. Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res. 21:5803-5816.
4. Bremont, M., D. Chabanne-Vautherot, P. Vannier, M., A. McCrae, and J. Cohen. 1990, Sequence analysis of the gene (6) encoding the major capsid protein (VP6) of group C rotavirus: higher than expected homology to the corresponding protein from group A virus. Virology 178:579-583.
5. Burd, C. G., and G. Dreyfuss. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621.
6. Caponigro, G., and R. Parker. 1996. Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev. 60:233-249.
7. Clemens, K. R., V. Wolf, S. J. McBryant, P. Zhang, X. Liao, P. E. Wright, and J. M. Gottesfeld. 1993. Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein. Science 260:530-533.
8. Estes, M. K. 1996. Rotaviruses and their replication, p. 1625-1655. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed., vol. 2. Lippincott-Raven Publishers, Philadelphia, Pa.
9. Estojak, J., R. Brent, and E. A. Golemis. 1995. Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 15:5820-5829.
10. Fields, S., and O. Song. 1989. A novel genetic system to detect protein-protein interactions. Nature 340:245-246.
11. Fields, S., and R. Sternglanz. 1994. The two-hybrid system: an assay for protein-protein interactions. Trends Genet. 10:286-292.
12. Fisher, R. J., and M. Fivash. 1994. Surface plasmon resonance based methods for measuring the kinetics and binding affinities of biomolecular interactions. Curr. Opin. Biotechnol. 5:389-395.
13. Gallie, D. R. 1998. A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation. Gene 216:1-11.
14. Gault, E., and A. Gabarg-Chenon. 1998. Personal communication.
15. Gillian, A. L., and M. L. Nibert. 1998. Amino terminus of reovirus nonstructural protein sigma NS is important for ssRNA binding and nucleoprotein complex formation. Virology 240:1-11.
16. Gomatos, P. J., O. Prakash, and N. M. Stamatos. 1981. Small reovirus particle composed solely of sigma NS with specificity for binding different nucleic acids. J. Virol. 39:115-124.
17. Gonzalez, R. A., M. A. Torres-Vega, S. Lopez, and C. F. Arias. 1998. In vivo interactions among rotavirus nonstructural proteins. Arch. Virol. 143:981-996.
18. Hesketh, J. E. 1996. mRNA targeting: signals in the 3′-untranslated sequences for sorting of some mRNAs. Biochem. Soc. Trans. 24:521-527.
19. Imataka, H., A. Gradi, and N. Sonenberg. 1998. A newly identified N-terminal amino acid sequence of human eIF4G binds poly(A) binding protein and functions in poly(A)-dependent translation. EMBO J. 17:7480-7489.
20. Kenan, D. J., C. C. Query, and J. D. Keene. 1991. RNA recognition: towards identifying determinants of specificity. Trends Biochem. Sci. 16:214-220.
21. Kozak, M. 1996. Interpreting cDNA sequences: some insights from studies on translation. Mamm. Genome 7:563-574.
22. Kunkel, T. A., K. Bebenek, and J. McClary. 1991. Efficient site-directed mutagenesis using uracil-containing DNA. Methods Enzymol. 204:125-139.
23. Lupas's algorithm. [Online.] http://www.isrec.isb-sib.ch/software/COILS _form.html. [26 April 1999, last date accessed.]
24. Mattion, N. M., J. Cohen, C. Aponte, and M. K. Estes. 1992. Characterization of an oligomerization domain and RNA-binding properties on rotavirus nonstructural protein NSP3. Virology 190:68-83.
25. Mattion, N. M., J. Cohen, and M. K. Estes. 1994. Rotavirus proteins, p. 169-249. In A. Kapikian (ed.), Viral infections of the gastrointestinal tract. Marcel Dekker, Inc., New York, N.Y.
26. Merrick, W. C., and J. W. B. Hershey. 1996. The pathway and mechanism of eucaryotic protein synthesis, p. 31-69. In. J. W. B. Hershey, M. B. Mathews, and N. Sonenberg (ed.), Translational control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
27. Myszka, D. G. 1997. Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors. Curr. Opin. Biotechnol. 8:50-57.
28. Nagai, K., C. Oubridge, N. Ito, J. Avis, and P. Evans. 1995. The NRP domain: a sequence-specific RNA-binding domain involved in processing and transport of RNA. Trends Biochem. Sci. 20:235-240.
29. Patel, R. C., and G. C. Sen. 1998. PACT, a protein activator of the interferon-induced protein kinase, PKR. EMBO J. 17:4379-4390.
30. Piron, M., and D. Poncet. Unpublished results.
31. Piron, M., P. Vende, J. Cohen, and D. Poncet. 1998. Rotavirus RNA-binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F. EMBO J. 17:5811-5821.
32. Poncet, D., C. Aponte, and J. Cohen. 1993. Rotavirus protein NSP3 (NS34) is bound to the 3′-end consensus sequence of viral mRNAs in infected cells. J. Virol. 67:3159-3165.
33. Poncet, D., S. Laurent, and J. Cohen. 1994. Four nucleotides are the minimal requirement for RNA recognition by rotavirus non-structural protein NSP3. EMBO J. 13:4165-4173.
34. Poncet, D., P. Lindenbaum, R. L'Haridon, and J. Cohen. 1997. In vivo and in vitro phosphorylation of rotavirus NSP5 correlates with its localization in viroplasms. J. Virol. 71:34-41.
35. Puglisi, J. D., R. Tan, B. J. Calnan, A. D. Frankel, and J. R. Williamson. 1992. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257:76-80.
36. Qian, Y. A., B. M. Jiang, L. J. Saif, S. Y. Kang, C. K. Ojeh, and K. Y. Green. 1991. Molecular analysis of the gene 6 from a porcine group C rotavirus that encodes the NS34 equivalent of group A rotaviruses. Virology 184:752-757.
37. Ramig, R. F. 1997. Genetics of the rotaviruses. Annu. Rev. Microbiol. 51: 225-255.
38. Rao, C. D., M. Das, P. Ilango, R. Lalwani, G. S. Rao, and K. Gowda. 1995. Comparative nucleotide and amino acid sequence analysis of the sequence-specific RNA-binding rotavirus nonstructural protein NSP3. Virology 207: 327-333.
39. Richardson, M. A., and Y. Furuichi. 1985. Synthesis in Escherichia coli of the reovirus nonstructural protein sigma NS. J. Virol. 56:527-533.
40. Ross, A. F., Y. Oleynikov, E. H. Kislauskis, K. L. Taneja, and R. H. Singer. 1997. Characterization of a beta-actin mRNA zipcode-binding protein. Mol. Cell. Biol. 17:2158-2165.
41. Siomi, H., M. Choi, M. C. Siomi, R. L. Nussbaum, and G. Dreyfuss. 1994. Essential role for KH domains in RNA binding: impaired RNA binding by a mutation in the KH domain of FMR1 that causes fragile X syndrome. Cell 77:33-39.
42. Stamatos, N. M., and P. J. Gomatos. 1982. Binding to selected regions of reovirus mRNAs by a nonstructural reovirus protein. Proc. Natl. Acad. Sci. USA 79:3457-3461.
43. Steinmetz, M. O., A. Stock, T. Schulthess, R. Landwehr, A. Lustig, J. Faix, G. Gerisch, U. Aebi, and R. A Kammerer. 1998. A distinct 14 residue site triggers coiled-coil formation in cortexillin I. EMBO J. 17:1883-1891.
44. Studier, F. W. 1991. Use of bacteriophage T7 lysozyme to improve inducible T7 expression system. J. Mol. Biol. 219:37-44.
45. Svensson, L., P. R. Dormitzer, C. H. von Bonsdorff, L. Maunula, and H. B. Greenberg. 1994. Intracellular manipulation of disulfide bond formation in rotavirus proteins during assembly. J. Virol. 68:5204-5215.
46. Tarun, S. Z., Jr., and A. B. Sachs. 1996. Association of the yeast poly(A) tail binding protein with translation initiation factor elF-4G. EMBO J. 15:7168-7177.
47. Theron, J., H. Huismans, and L. H. Nel. 1996. Identification of a short domain within the non-structural protein NS2 of epizootic haemorrhagic disease virus that is important for single strand RNA-binding activity. J. Gen. Virol. 77:129-137.
48. Theron, J., and L. H. Nel. 1997. Stable protein-RNA interaction involves the terminal domains of bluetongue virus mRNA, but not the terminally conserved sequences. Virology 229:134-142.
49. Trybus, K. M., Y. Freyzon, L. Z. Faust, and H. L. Sweeney. 1997. Spare the rod, spoil the regulation: necessity for a myosin rod. Proc. Natl. Acad. Sci. USA 94:48-52.
50. van Staden, V., J. Theron, B. J. Greyling, H. Huismans, and L. H. Nel. 1991. A comparison of the nucleotide sequences of cognate NS2 genes of three different orbiviruses. Virology 185:500-504.
51. Yin, H. S., and L. H. Lee. 1998. Identification and characterization of RNA-binding activities of avian reovirus non-structural protein sigmaNS. J. Gen. Virol. 79:1411-1413.
52. Yolken, R., S. Arango-Jaramillo, J. Eiden, and S. Vonderfecht. 1988. Lack of genomic reassortment following infection of infant rats with group A and group B rotaviruses. J. Infect. Dis. 158:1120-1123.
53. Zamore, P. D., J. R. Williamson, and R. Lehmann. 1997. The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA 3:1421-1433.
54. Zhao, Y., C. Thomas, C. Bremer, and P. Roy. 1994. Deletion and mutational analyses of bluetongue virus NS2 protein indicate that the amino but not the carboxy terminus of the protein is critical for RNA-protein interactions. J. Virol. 68:2179-2185.