Porcine group a rotaviruses with heterogeneous VP7 and VP4 genotype combinations can be found together with enteric bacteria on Belgian swine farms

Veterinary Microbiology

Volumn 172, Issue 1-2, 2014, Pages 23-34

  Theuns, Sebastiaan ^a   Desmarets, Lowiese M B ^a   Heylen, Elisabeth ^b   Zeller, Mark ^b   Dedeurwaerder, Annelike ^a   Roukaerts, Inge D M ^a   Van Ranst, Marc ^b   Matthijnssens, Jelle ^b   Nauwynck, Hans J ^a  

^a GHENT UNIVERSITY   (Belgium)

^b REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

Co infections; Diagnosis; Genotype; Porcine rotavirus; VP4; VP7

Indexed keywords

PROTEIN VP4; PROTEIN VP7;

ANTIGEN DETECTION; ARTICLE; BRACHYSPIRA; CLOSTRIDIUM PERFRINGENS; CONTROLLED STUDY; DIARRHEA; ENTEROBACTERIACEAE; ESCHERICHIA COLI; GENETIC VARIABILITY; GENOTYPE; GROUP A ROTAVIRUS; MIXED INFECTION; NONHUMAN; PATHOGENESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SALMONELLA; SWINE; VIRUS ISOLATION;

BACTERIA (MICROORGANISMS); BRACHYSPIRA; CLOSTRIDIUM PERFRINGENS; ENTEROBACTERIACEAE; ESCHERICHIA COLI; PORCINE ROTAVIRUS; ROTAVIRUS A; SALMONELLA SP.; SUIDAE; SUS;

CO-INFECTIONS; DIAGNOSIS; GENOTYPE; PORCINE ROTAVIRUS; VP4; VP7;

ANIMALS; BELGIUM; COINFECTION; DIARRHEA; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTIONS; FECES; GENETIC VARIATION; GENOTYPE; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTIONS; SWINE; SWINE DISEASES;

EID: 84903469186     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2014.04.002     Document Type: Article

References (41)

1. Ahmed S., Klena J., Albana A., Alhamdani F., Oskoff J., Soliman M., Heylen E., Teleb N., Husain T., Matthijnssens J. Characterization of human rotaviruses circulating in Iraq in 2008: atypical G8 and high prevalence of P[6] strains. Infect. Genet. Evol. 2013, 16:212-217.
2. Amimo J.O., Vlasova A.N., Saif L.J. Detection and genetic diversity of porcine group A rotaviruses in historic (2004) and recent (2011 and 2012) swine fecal samples in Ohio: predominance of the G9P[13] genotype in nursing piglets. J. Clin. Microbiol. 2013, 51:1142-1151.
3. Amimo J.O., Vlasova A.N., Saif L.J. Prevalence and genetic heterogeneity of porcine group C rotaviruses in nursing and weaned piglets in Ohio, USA and identification of a potential new VP4 genotype. Vet. Microbiol. 2013, 164:27-38.
4. Banyai K., Laszlo B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 30(Suppl 1):A122-A130.
5. Banyai K., Mijatovic-Rustempasic S., Hull J.J., Esona M.D., Freeman M.M., Frace A.M., Bowen M.D., Gentsch J.R. Sequencing and phylogenetic analysis of the coding region of six common rotavirus strains: evidence for intragenogroup reassortment among co-circulating G1P[8] and G2P[4] strains from the United States. J. Med. Virol. 2011, 83:532-539.
6. Bohl E.H., Kohler E.M., Saif L.J., Cross R.F., Agnes A.G., Theil K.W. Rotavirus as a cause of diarrhea in pigs. J. Am. Vet. Med. Assoc. 1978, 172:458-463.
7. Collins P.J., Martella V., Buonavoglia C., O'Shea H. Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32]. Vet. Res. 2010, 41:73.
8. Collins P.J., Martella V., O'Shea H. Detection and characterization of group C rotaviruses in asymptomatic piglets in Ireland. J. Clin. Microbiol. 2008, 46:2973-2979.
9. Collins P.J., Martella V., Sleator R.D., Fanning S., O'Shea H. Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland. Arch. Virol. 2010, 155:1247-1259.
10. Debouck P., Pensaert M. Experimental infection of pigs with Belgian isolates of the porcine rotavirus. Zbl. Vet. Med. B. 1979, 26:517-526.
11. 2 genotype on the genetic background of a porcine rotavirus. Infect. Genet. Evol.: J. Mol. Epidemiol. Evol. Genet. Infect. Dis. 2014, 21:334-350.
12. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
13. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., Fang Z.Y. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 1990, 28:276-282.
14. Hoshino Y., Wyatt R.G., Flores J., Midthun K., Kapikian A.Z. Serotypic characterization of rotaviruses derived from asymptomatic human neonatal infections. J. Clin. Microbiol. 1985, 21:425-430.
15. Hwang K.P., Wu F.T., Banyai K., Wu H.S., Yang D.C., Huang Y.C., Lin J.S., Hsiung C.A., Huang J.C., Jiang B., Gentsch J.R. Identification of porcine rotavirus-like genotype P[6] strains in Taiwanese children. J. Med. Microbiol. 2012, 61:990-997.
16. Iturriza-Gomara M., Dallman T., Banyai K., Bottiger B., Buesa J., Diedrich S., Fiore L., Johansen K., Korsun N., Kroneman A., Lappalainen M., Laszlo B., Maunula L., Matthinjnssens J., Midgley S., Mladenova Z., Poljsak-Prijatelj M., Pothier P., Ruggeri F.M., Sanchez-Fauquier A., Schreier E., Steyer A., Sidaraviciute I., Tran A.N., Usonis V., Van Ranst M., de Rougemont A., Gray J. Rotavirus surveillance in Europe, 2005-2008: web-enabled reporting and real-time analysis of genotyping and epidemiological data. J. Infect. Dis. 2009, 200(Suppl 1):S215-S221.
17. Khamrin P., Maneekarn N., Peerakome S., Chan-it W., Yagyu F., Okitsu S., Ushijima H. Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 2007, 361:243-252.
18. Lamhoujeb S., Cook A., Pollari F., Bidawid S., Farber J., Mattison K. Rotaviruses from Canadian farm samples. Arch. Virol. 2010, 155:1127-1137.
19. Lecce J.G., King M.W. Role of rotavirus (reo-like) in weanling diarrhea of pigs. J. Clin. Microbiol. 1978, 8:454-458.
20. Martella V., Banyai K., Ciarlet M., Iturriza-Gomara M., Lorusso E., De Grazia S., Arista S., Decaro N., Elia G., Cavalli A., Corrente M., Lavazza A., Baselga R., Buonavoglia C. Relationships among porcine and human P[6] rotaviruses: evidence that the different human P[6] lineages have originated from multiple interspecies transmission events. Virology 2006, 344:509-519.
21. Martella V., Bányai K., Matthijnssens J., Buonavoglia C., Ciarlet M. Zoonotic aspects of rotaviruses. Vet. Microbiol. 2010, 140:246-255.
22. Martella V., Ciarlet M., Banyai K., Lorusso E., Arista S., Lavazza A., Pezzotti G., Decaro N., Cavalli A., Lucente M.S., Corrente M., Elia G., Camero M., Tempesta M., Buonavoglia C. Identification of group A porcine rotavirus strains bearing a novel VP4(P) genotype in Italian swine herds. J. Clin. Microbiol. 2007, 45:577-580.
23. Martella V., Ciarlet M., Baselga R., Arista S., Elia G., Lorusso E., Banyai K., Terio V., Madio A., Ruggeri F.M., Falcone E., Camero M., Decaro N., Buonavoglia C. Sequence analysis of the VP7 and VP4 genes identifies a novel VP7 gene allele of porcine rotaviruses, sharing a common evolutionary origin with human G2 rotaviruses. Virology 2005, 337:111-123.
24. Marthaler D., Rossow K., Culhane M., Collins J., Goyal S., Ciarlet M., Matthijnssens J. Identification, phylogenetic analysis and classification of porcine group C rotavirus VP7 sequences from the United States and Canada. Virology 2013, 446:189-198.
25. Marthaler D., Rossow K., Gramer M., Collins J., Goyal S., Tsunemitsu H., Kuga K., Suzuki T., Ciarlet M., Matthijnssens J. Detection of substantial porcine group B rotavirus genetic diversity in the United States, resulting in a modified classification proposal for G genotypes. Virology 2012, 433:85-96.
26. Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., Rahman M., Van Ranst M. Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J. Virol. 2008, 82:3204-3219.
27. Matthijnssens J., Ciarlet M., McDonald S.M., Attoui H., Banyai K., Brister J.R., Buesa J., Esona M.D., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Johne R., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Parreno V., Rahman M., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Patton J.T., Desselberger U., Van Ranst M. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch. Virol. 2011, 156:1397-1413.
28. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Banyai K., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Patton J.T., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Desselberger U., Van Ranst M. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 2008, 153:1621-1629.
29. Matthijnssens J., Otto P.H., Ciarlet M., Desselberger U., Van Ranst M., Johne R. VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch. Virol. 2012, 157:1177-1182.
30. Midgley S.E., Banyai K., Buesa J., Halaihel N., Hjulsager C.K., Jakab F., Kaplon J., Larsen L.E., Monini M., Poljsak-Prijatelj M., Pothier P., Ruggeri F.M., Steyer A., Koopmans M., Bottiger B. Diversity and zoonotic potential of rotaviruses in swine and cattle across Europe. Vet. Microbiol. 2012, 156:238-245.
31. Miyazaki A., Kuga K., Suzuki T., Kohmoto M., Katsuda K., Tsunemitsu H. Annual changes in predominant genotypes of rotavirus A detected in the feces of pigs in various developmental stages raised on a conventional farm. Vet. Microbiol. 2013, 163:162-166.
32. Miyazaki A., Kuga K., Suzuki T., Tsunemitsu H. Analysis of the excretion dynamics and genotypic characteristics of rotavirus A during the lives of pigs raised on farms for meat production. J. Clin. Microbiol. 2012, 50:2009-2017.
33. Mukherjee A., Dutta D., Ghosh S., Bagchi P., Chattopadhyay S., Nagashima S., Kobayashi N., Dutta P., Krishnan T., Naik T.N., Chawla-Sarkar M. Full genomic analysis of a human group A rotavirus G9P[6] strain from Eastern India provides evidence for porcine-to-human interspecies transmission. Arch. Virol. 2009, 154:733-746.
34. Nakagomi T., Horie Y., Koshimura Y., Greenberg H.B., Nakagomi O. Isolation of a human rotavirus strain with a super-short RNA pattern and a new P2 subtype. J. Clin. Microbiol. 1999, 37:1213-1216.
35. Papp H., Laszlo B., Jakab F., Ganesh B., De Grazia S., Matthijnssens J., Ciarlet M., Martella V., Banyai K. Review of group A rotavirus strains reported in swine and cattle. Vet. Microbiol. 2013, 165:190-199.
36. Songer J.G., Uzal F.A. Clostridial enteric infections in pigs. J. Vet. Diagn. Invest. 2005, 17:528-536.
37. Steyer A., Poljsak-Prijatelj M., Barlic-Maganja D., Jamnikar U., Mijovski J.Z., Marin J. Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 2007, 359:275-282.
38. Steyer A., Poljsak-Prijatelj M., Barlic-Maganja D., Marin J. Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment. J. Gen. Virol. 2008, 89:1690-1698.
39. Todd S., Page N.A., Duncan Steele A., Peenze I., Cunliffe N.A. Rotavirus strain types circulating in Africa: review of studies published during 1997-2006. J. Infect. Dis. 2010, 202(Suppl):S34-S42.
40. Trojnar E., Sachsenroder J., Twardziok S., Reetz J., Otto P.H., Johne R. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J. Gen. Virol. 2013, 94:136-142.
41. Zeller M., Heylen E., De Coster S., Van Ranst M., Matthijnssens J. Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium. Infect. Genet. Evol. 2012, 12:1492-1500.