메뉴 건너뛰기




Volumn 21, Issue 1, 2015, Pages 113-123

Fission yeast RNA triphosphatase reads an Spt5 CTD code

Author keywords

Elongation; mRNA capping; mRNA processing; Transcription; X ray crystallography

Indexed keywords

FUNGAL RNA; HOMODIMER; PHOSPHATASE; THREONINE; TRYPTOPHAN; APOENZYME; DNA BINDING PROTEIN; PROTEIN BINDING; RES2 PROTEIN, S POMBE; SCHIZOSACCHAROMYCES POMBE PROTEIN; SPT5 PROTEIN, S POMBE; TRANSCRIPTION ELONGATION FACTOR;

EID: 84920537969     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.048181.114     Document Type: Article
Times cited : (11)

References (37)
  • 2
    • 41449108933 scopus 로고    scopus 로고
    • Characterization of a trifunctional mimivirus mRNA capping enzyme and crystal structure of the RNA triphosphatase domain
    • Benarroch D, Smith P, Shuman S. 2008. Characterization of a trifunctional mimivirus mRNA capping enzyme and crystal structure of the RNA triphosphatase domain. Structure 16: 501-512.
    • (2008) Structure , vol.16 , pp. 501-512
    • Benarroch, D.1    Smith, P.2    Shuman, S.3
  • 4
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • Buratowski S. 2009. Progression through the RNA polymerase II CTD cycle. Mol Cell 36: 541-546.
    • (2009) Mol Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 6
    • 84889051321 scopus 로고    scopus 로고
    • RNA polymerase II C-terminal domain: Tethering transcription to transcript and template
    • Corden JL. 2013. RNA polymerase II C-terminal domain: tethering transcription to transcript and template. Chem Rev 113: 8423-8455.
    • (2013) Chem Rev , vol.113 , pp. 8423-8455
    • Corden, J.L.1
  • 7
    • 84902519559 scopus 로고    scopus 로고
    • How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes
    • Doamekpor SK, Sanchez AM, Schwer B, Shuman S, Lima CD. 2014. How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes. Genes Dev 28: 1323-1336.
    • (2014) Genes Dev , vol.28 , pp. 1323-1336
    • Doamekpor, S.K.1    Sanchez, A.M.2    Schwer, B.3    Shuman, S.4    Lima, C.D.5
  • 8
    • 84888991588 scopus 로고    scopus 로고
    • The RNA polymerase II carboxy-terminal domain (CTD) code
    • Eick D, Geyer M. 2013. The RNA polymerase II carboxy-terminal domain (CTD) code. Chem Rev 113: 8456-8490.
    • (2013) Chem Rev , vol.113 , pp. 8456-8490
    • Eick, D.1    Geyer, M.2
  • 9
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Pt 1
    • Emsley P, Cowtan K. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1): 2126-2132.
    • (2004) Acta Crystallogr D Biol Crystallogr , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 10
    • 0038094496 scopus 로고    scopus 로고
    • Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II
    • Fabrega C, Shen V, Shuman S, Lima CD. 2003. Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II. Mol Cell 11: 1549-1561.
    • (2003) Mol Cell , vol.11 , pp. 1549-1561
    • Fabrega, C.1    Shen, V.2    Shuman, S.3    Lima, C.D.4
  • 12
    • 79960442655 scopus 로고    scopus 로고
    • Structural insights to how mammalian capping enzyme reads the CTD code
    • Ghosh A, Shuman S, Lima CD. 2011. Structural insights to how mammalian capping enzyme reads the CTD code. Mol Cell 43: 299-310.
    • (2011) Mol Cell , vol.43 , pp. 299-310
    • Ghosh, A.1    Shuman, S.2    Lima, C.D.3
  • 13
    • 33746571989 scopus 로고    scopus 로고
    • Structure-function analysis of Plasmodium RNA triphosphatase and description of a triphosphate tunnel metalloenzyme superfamily that includes Cet1-like RNA triphosphatases and CYTH proteins
    • Gong C, Smith P, Shuman S. 2006. Structure-function analysis of Plasmodium RNA triphosphatase and description of a triphosphate tunnel metalloenzyme superfamily that includes Cet1-like RNA triphosphatases and CYTH proteins. RNA 12: 1468-1474.
    • (2006) RNA , vol.12 , pp. 1468-1474
    • Gong, C.1    Smith, P.2    Shuman, S.3
  • 14
    • 75849118597 scopus 로고    scopus 로고
    • Structure of the Saccharomyces cerevisiae Cet1-Ceg1 mRNA capping apparatus
    • Gu M, Rajashankar KR, Lima CD. 2010. Structure of the Saccharomyces cerevisiae Cet1-Ceg1 mRNA capping apparatus. Structure 18: 216-227.
    • (2010) Structure , vol.18 , pp. 216-227
    • Gu, M.1    Rajashankar, K.R.2    Lima, C.D.3
  • 15
    • 84872424651 scopus 로고    scopus 로고
    • The Spt4-Spt5 complex: A multi-faceted regulator of transcription elongation
    • Hartzog GA, Fu J. 2013. The Spt4-Spt5 complex: a multi-faceted regulator of transcription elongation. Biochim Biophys Acta 1829: 105-115.
    • (2013) Biochim Biophys Acta , vol.1829 , pp. 105-115
    • Hartzog, G.A.1    Fu, J.2
  • 16
    • 0042733510 scopus 로고    scopus 로고
    • Homodimeric quaternary structure is required for the in vivo function and thermal stability of Saccharomyces cerevisiae and Schizosaccharomyces pombe RNA triphosphatases
    • Hausmann S, Pei Y, Shuman S. 2003. Homodimeric quaternary structure is required for the in vivo function and thermal stability of Saccharomyces cerevisiae and Schizosaccharomyces pombe RNA triphosphatases. J Biol Chem 278: 30487-30496.
    • (2003) J Biol Chem , vol.278 , pp. 30487-30496
    • Hausmann, S.1    Pei, Y.2    Shuman, S.3
  • 17
    • 0033105827 scopus 로고    scopus 로고
    • Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian capping enzyme
    • Ho CK, Shuman S. 1999. Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian capping enzyme. Mol Cell 3: 405-411.
    • (1999) Mol Cell , vol.3 , pp. 405-411
    • Ho, C.K.1    Shuman, S.2
  • 18
    • 0033572891 scopus 로고    scopus 로고
    • An essential surface motif (WAQKW) of yeast RNA triphosphatase mediates formation of the mRNA capping enzyme complex with RNA guanylyltransferase
    • Ho CK, Lehman K, Shuman S. 1999. An essential surface motif (WAQKW) of yeast RNA triphosphatase mediates formation of the mRNA capping enzyme complex with RNA guanylyltransferase. Nucleic Acids Res 27: 4671-4678.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4671-4678
    • Ho, C.K.1    Lehman, K.2    Shuman, S.3
  • 19
    • 84889028380 scopus 로고    scopus 로고
    • The writers, readers, and functions of the RNA polymerase II C-terminal domain code
    • Jeronimo C, Bataille AR, Robert F. 2013. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Chem Rev 113: 8491-8522.
    • (2013) Chem Rev , vol.113 , pp. 8491-8522
    • Jeronimo, C.1    Bataille, A.R.2    Robert, F.3
  • 20
    • 34249748419 scopus 로고    scopus 로고
    • Novel triphosphate phosphohydrolase activity of Clostridium thermocellum TTM, a member of the triphosphate tunnel metalloenzyme superfamily
    • Keppetipola N, Jain R, Shuman S. 2007. Novel triphosphate phosphohydrolase activity of Clostridium thermocellum TTM, a member of the triphosphate tunnel metalloenzyme superfamily. J Biol Chem 282: 11941-11949.
    • (2007) J Biol Chem , vol.282 , pp. 11941-11949
    • Keppetipola, N.1    Jain, R.2    Shuman, S.3
  • 21
    • 0033529501 scopus 로고    scopus 로고
    • A conserved domain of yeast RNA triphosphatase flanking the catalytic core regulates self-association and interaction with the guanylyltransferase component of the mRNA capping apparatus
    • Lehman K, Schwer B, Ho CK, Rouzankina I, Shuman S. 1999. A conserved domain of yeast RNA triphosphatase flanking the catalytic core regulates self-association and interaction with the guanylyltransferase component of the mRNA capping apparatus. J Biol Chem 274: 22668-22678.
    • (1999) J Biol Chem , vol.274 , pp. 22668-22678
    • Lehman, K.1    Schwer, B.2    Ho, C.K.3    Rouzankina, I.4    Shuman, S.5
  • 22
    • 0033601125 scopus 로고    scopus 로고
    • Structure and mechanism of yeast RNA triphosphatase: An essential component of the mRNA capping apparatus
    • Lima CD, Wang LK, Shuman S. 1999. Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus. Cell 99: 533-543.
    • (1999) Cell , vol.99 , pp. 533-543
    • Lima, C.D.1    Wang, L.K.2    Shuman, S.3
  • 23
    • 0029887308 scopus 로고    scopus 로고
    • Fluorescence polarization analysis of protein -DNA and protein-protein interactions
    • Lundblad JR, Laurance M, Goodman RH. 1996. Fluorescence polarization analysis of protein -DNA and protein-protein interactions. Mol Endocrinol 10: 607-612.
    • (1996) Mol Endocrinol , vol.10 , pp. 607-612
    • Lundblad, J.R.1    Laurance, M.2    Goodman, R.H.3
  • 25
    • 0033638223 scopus 로고    scopus 로고
    • Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast
    • Mossessova E, Lima CD. 2000. Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. Mol Cell 5: 865-876.
    • (2000) Mol Cell , vol.5 , pp. 865-876
    • Mossessova, E.1    Lima, C.D.2
  • 26
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 27
    • 0037205456 scopus 로고    scopus 로고
    • Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5
    • Pei Y, Shuman S. 2002. Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5. J Biol Chem 277: 19639-19648.
    • (2002) J Biol Chem , vol.277 , pp. 19639-19648
    • Pei, Y.1    Shuman, S.2
  • 28
    • 0242321980 scopus 로고    scopus 로고
    • Characterization of the Schizosaccharomyces pombe Cdk9/Pch1 protein kinase: Spt5 phosphorylation, autophosphorylation and mutational analysis
    • Pei Y, Shuman S. 2003. Characterization of the Schizosaccharomyces pombe Cdk9/Pch1 protein kinase: Spt5 phosphorylation, autophosphorylation and mutational analysis. J Biol Chem 278: 43346-43356.
    • (2003) J Biol Chem , vol.278 , pp. 43346-43356
    • Pei, Y.1    Shuman, S.2
  • 29
    • 0035958863 scopus 로고    scopus 로고
    • The length, phosphorylation state, and primary structure of the RNA polymerase II carboxyl-terminal domain dictate interactions with mRNA capping enzymes
    • Pei Y, Hausmann S, Ho CK, Schwer B, Shuman S. 2001a. The length, phosphorylation state, and primary structure of the RNA polymerase II carboxyl-terminal domain dictate interactions with mRNA capping enzymes. J Biol Chem 276: 28075-28082.
    • (2001) J Biol Chem , vol.276 , pp. 28075-28082
    • Pei, Y.1    Hausmann, S.2    Ho, C.K.3    Schwer, B.4    Shuman, S.5
  • 30
    • 0035863851 scopus 로고    scopus 로고
    • Characterization of Schizosaccharomyces pombe RNA triphosphatase
    • Pei Y, Schwer B, Hausmann S, Shuman S. 2001b. Characterization of Schizosaccharomyces pombe RNA triphosphatase. Nucleic Acids Res 29: 387-396.
    • (2001) Nucleic Acids Res , vol.29 , pp. 387-396
    • Pei, Y.1    Schwer, B.2    Hausmann, S.3    Shuman, S.4
  • 31
    • 77951993585 scopus 로고    scopus 로고
    • Separable functions of the fission yeast Spt5 carboxyl-terminal domain (CTD) in capping enzyme binding and transcription elongation overlap with those of the RNA polymerase II CTD
    • Schneider S, Pei Y, Shuman S, Schwer B. 2010. Separable functions of the fission yeast Spt5 carboxyl-terminal domain (CTD) in capping enzyme binding and transcription elongation overlap with those of the RNA polymerase II CTD. Mol Cell Biol 30: 2353-2364.
    • (2010) Mol Cell Biol , vol.30 , pp. 2353-2364
    • Schneider, S.1    Pei, Y.2    Shuman, S.3    Schwer, B.4
  • 32
    • 79960455840 scopus 로고    scopus 로고
    • Deciphering the RNA polymerase II CTD code in fission yeast
    • Schwer B, Shuman S. 2011. Deciphering the RNA polymerase II CTD code in fission yeast. Mol Cell 43: 311-318.
    • (2011) Mol Cell , vol.43 , pp. 311-318
    • Schwer, B.1    Shuman, S.2
  • 33
    • 84868145609 scopus 로고    scopus 로고
    • Puncuation and syntax of the RNA polymerase II CTD code in fission yeast
    • Schwer B, Sanchez AM, Shuman S. 2012. Puncuation and syntax of the RNA polymerase II CTD code in fission yeast. Proc Nat Acad Sci 109: 18024-18029.
    • (2012) Proc Nat Acad Sci , vol.109 , pp. 18024-18029
    • Schwer, B.1    Sanchez, A.M.2    Shuman, S.3
  • 35
    • 0033566042 scopus 로고    scopus 로고
    • Transcription elongation factor hSPT5 stimulates mRNA capping
    • Wen Y, Shatkin AJ. 1999. Transcription elongation factor hSPT5 stimulates mRNA capping. Genes Dev 13: 1774-1779.
    • (1999) Genes Dev , vol.13 , pp. 1774-1779
    • Wen, Y.1    Shatkin, A.J.2
  • 36
  • 37
    • 30744449491 scopus 로고    scopus 로고
    • P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation
    • Yamada T, Yamaguchi Y, Inukai N, Okamoto S, Mura T, Handa H. 2006. P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Mol Cell 21: 227-237.
    • (2006) Mol Cell , vol.21 , pp. 227-237
    • Yamada, T.1    Yamaguchi, Y.2    Inukai, N.3    Okamoto, S.4    Mura, T.5    Handa, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.