-
1
-
-
77955283220
-
The bacterial cell envelope
-
Silhavy, T. J., Kahne, D., and Walker, S. (2010) The bacterial cell envelope. Cold Spring Harb. Perspect. Biol. 2, a000414
-
(2010)
Cold Spring Harb. Perspect. Biol.
, vol.2
-
-
Silhavy, T.J.1
Kahne, D.2
Walker, S.3
-
2
-
-
84862765492
-
Chaperone-dependent mechanisms for acid resistance in enteric bacteria
-
Hong, W., Wu, Y. E., Fu, X., and Chang, Z. (2012) Chaperone-dependent mechanisms for acid resistance in enteric bacteria. Trends Microbiol. 20, 328-335
-
(2012)
Trends Microbiol.
, vol.20
, pp. 328-335
-
-
Hong, W.1
Wu, Y.E.2
Fu, X.3
Chang, Z.4
-
3
-
-
73949118739
-
Molecular mechanisms of escherichia coli pathogenicity
-
Croxen, M. A., and Finlay, B. B. (2010) Molecular mechanisms of Escherichia coli pathogenicity. Nat. Rev. Microbiol. 8, 26-38
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 26-38
-
-
Croxen, M.A.1
Finlay, B.B.2
-
4
-
-
84866912780
-
Protein traffic in gram-negative bacteria-how exported and secreted proteins find their way
-
Dalbey, R. E., and Kuhn, A. (2012) Protein traffic in Gram-negative bacteria-how exported and secreted proteins find their way. FEMS Microbiol. Rev. 36, 1023-1045
-
(2012)
FEMS Microbiol. Rev.
, vol.36
, pp. 1023-1045
-
-
Dalbey, R.E.1
Kuhn, A.2
-
5
-
-
0034733816
-
Bacterial protein translocase: A unique molecular machine with an army of substrates
-
Economou, A. (2000) Bacterial protein translocase: a unique molecular machine with an army of substrates. FEBS Lett. 476, 18-21
-
(2000)
FEBS Lett.
, vol.476
, pp. 18-21
-
-
Economou, A.1
-
6
-
-
84861361690
-
Mechanisms of sec61/SecY-mediated protein translocation across membranes
-
Park, E., and Rapoport, T. A. (2012) Mechanisms of Sec61/SecY-mediated protein translocation across membranes. Annu. Rev. Biophys. 41, 21-40
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 21-40
-
-
Park, E.1
Rapoport, T.A.2
-
7
-
-
36749001066
-
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes
-
Rapoport, T. A. (2007) Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes. Nature 450, 663-669
-
(2007)
Nature
, vol.450
, pp. 663-669
-
-
Rapoport, T.A.1
-
8
-
-
79851515815
-
The sec translocase
-
du Plessis, D. J., Nouwen, N., and Driessen, A. J. (2011) The Sec translocase. Biochim. Biophys. Acta 1808, 851-865
-
(2011)
Biochim. Biophys. Acta
, vol.1808
, pp. 851-865
-
-
Du Plessis, D.J.1
Nouwen, N.2
Driessen, A.J.3
-
10
-
-
80053271174
-
Protein quality control in the bacterial periplasm
-
Merdanovic, M., Clausen, T., Kaiser, M., Huber, R., and Ehrmann, M. (2011) Protein quality control in the bacterial periplasm. Annu. Rev. Microbiol. 65, 149-168
-
(2011)
Annu. Rev. Microbiol.
, vol.65
, pp. 149-168
-
-
Merdanovic, M.1
Clausen, T.2
Kaiser, M.3
Huber, R.4
Ehrmann, M.5
-
11
-
-
79953693293
-
Systematic analysis of native membrane protein complexes in escherichia coli
-
Maddalo, G., Stenberg-Bruzell, F., Gotzke, H., Toddo, S., Bjorkholm, P., Eriksson, H., Chovanec, P., Genevaux, P., Lehtio, J., Ilag, L. L., and Daley, D. O. (2011) Systematic analysis of native membrane protein complexes in Escherichia coli. J. Proteome Res. 10, 1848-1859
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1848-1859
-
-
Maddalo, G.1
Stenberg-Bruzell, F.2
Gotzke, H.3
Toddo, S.4
Bjorkholm, P.5
Eriksson, H.6
Chovanec, P.7
Genevaux, P.8
Lehtio, J.9
Ilag, L.L.10
Daley, D.O.11
-
12
-
-
84866610451
-
Application of split-green fluorescent protein for topology mapping membrane proteins in escherichia coli
-
Toddo, S., Soderstrom, B., Palombo, I., von Heijne, G., Norholm, M. H., and Daley, D. O. (2012) Application of split-green fluorescent protein for topology mapping membrane proteins in Escherichia coli. Protein Sci. 21, 1571-1576
-
(2012)
Protein Sci.
, vol.21
, pp. 1571-1576
-
-
Toddo, S.1
Soderstrom, B.2
Palombo, I.3
Von Heijne, G.4
Norholm, M.H.5
Daley, D.O.6
-
13
-
-
84903842242
-
YfgM is an ancillary subunit of the SecYEG translocon in escherichia coli
-
Gotzke, H., Palombo, I., Muheim, C., Perrody, E., Genevaux, P., Kudva, R., Muller, M., and Daley, D. O. (2014) YfgM is an ancillary subunit of the SecYEG translocon in Escherichia coli. J. Biol. Chem. 289, 19089-19097
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 19089-19097
-
-
Gotzke, H.1
Palombo, I.2
Muheim, C.3
Perrody, E.4
Genevaux, P.5
Kudva, R.6
Muller, M.7
Daley, D.O.8
-
14
-
-
33750975084
-
Advancing uracil-excision based cloning towards an ideal technique for cloning PCR fragments
-
Nour-Eldin, H. H., Hansen, B. G., Norholm, M. H., Jensen, J. K., and Halkier, B. A. (2006) Advancing uracil-excision based cloning towards an ideal technique for cloning PCR fragments. Nucleic Acids Res. 34, e122
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. e122
-
-
Nour-Eldin, H.H.1
Hansen, B.G.2
Norholm, M.H.3
Jensen, J.K.4
Halkier, B.A.5
-
15
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S., and Heck, A. J. (2009) Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4, 484-494
-
(2009)
Nat. Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
16
-
-
77951872216
-
Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome
-
Helbig, A. O., Gauci, S., Raijmakers, R., van Breukelen, B., Slijper, M., Mohammed, S., and Heck, A. J. (2010) Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome. Mol. Cell Proteomics 9, 928-939
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 928-939
-
-
Helbig, A.O.1
Gauci, S.2
Raijmakers, R.3
Van Breukelen, B.4
Slijper, M.5
Mohammed, S.6
Heck, A.J.7
-
17
-
-
84863700845
-
In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis
-
Cristobal, A., Hennrich, M. L., Giansanti, P., Goerdayal, S. S., Heck, A. J., and Mohammed, S. (2012) In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis. Analyst 137, 3541-3548
-
(2012)
Analyst
, vol.137
, pp. 3541-3548
-
-
Cristobal, A.1
Hennrich, M.L.2
Giansanti, P.3
Goerdayal, S.S.4
Heck, A.J.5
Mohammed, S.6
-
18
-
-
35748972060
-
Semi-supervised learning for peptide identification from shotgun proteomics datasets
-
Kall, L., Canterbury, J. D., Weston, J., Noble, W. S., and MacCoss, M. J. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods 4, 923-925
-
(2007)
Nat. Methods
, vol.4
, pp. 923-925
-
-
Kall, L.1
Canterbury, J.D.2
Weston, J.3
Noble, W.S.4
MacCoss, M.J.5
-
19
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
-
Vizcaino, J. A., Cote, R. G., Csordas, A., Dianes, J. A., Fabregat, A., Foster, J. M., Griss, J., Alpi, E., Birim, M., Contell, J., O'Kelly, G., Schoenegger, A., Ovelleiro, D., Perez-Riverol, Y., Reisinger, F., Rios, D., Wang, R., and Hermjakob, H. (2013) The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013. Nucleic Acids Res. 41, D1063-D1069
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1063-D1069
-
-
Vizcaino, J.A.1
Cote, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
O'Kelly, G.11
Schoenegger, A.12
Ovelleiro, D.13
Perez-Riverol, Y.14
Reisinger, F.15
Rios, D.16
Wang, R.17
Hermjakob, H.18
-
20
-
-
84879969808
-
Quantitative analysis of SecYEG-mediated insertion of transmembrane alpha-helices into the bacterial inner membrane
-
Ojemalm, K., Botelho, S. C., Studle, C., and von Heijne, G. (2013) Quantitative analysis of SecYEG-mediated insertion of transmembrane alpha-helices into the bacterial inner membrane. J. Mol. Biol. 425, 2813-2822
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 2813-2822
-
-
Ojemalm, K.1
Botelho, S.C.2
Studle, C.3
Von Heijne, G.4
-
21
-
-
0141467456
-
Maltose transport through the inner membrane of E. Coli
-
Fetsch, E. E., and Davidson, A. L. (2003) Maltose transport through the inner membrane of E. Coli. Front. Biosci. 8, d652-d660
-
(2003)
Front. Biosci.
, vol.8
, pp. d652-d660
-
-
Fetsch, E.E.1
Davidson, A.L.2
-
22
-
-
0034698130
-
Multiple roles for the twin arginine leader sequence of dimethyl sulfoxide reductase of escherichia coli
-
Sambasivarao, D., Turner, R. J., Simala-Grant, J. L., Shaw, G., Hu, J., and Weiner, J. H. (2000) Multiple roles for the twin arginine leader sequence of dimethyl sulfoxide reductase of Escherichia coli. J. Biol. Chem. 275, 22526-22531
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 22526-22531
-
-
Sambasivarao, D.1
Turner, R.J.2
Simala-Grant, J.L.3
Shaw, G.4
Hu, J.5
Weiner, J.H.6
-
23
-
-
84884527530
-
Mechanisms of acid resistance in escherichia coli
-
Kanjee, U., and Houry, W. A. (2013) Mechanisms of acid resistance in Escherichia coli. Annu. Rev. Microbiol. 67, 65-81
-
(2013)
Annu. Rev. Microbiol.
, vol.67
, pp. 65-81
-
-
Kanjee, U.1
Houry, W.A.2
-
24
-
-
77953697077
-
CadC regulates cad and tdc operons in response to gastrointestinal stresses and enhances intestinal colonization of klebsiella pneumoniae
-
Hsieh, P. F., Lin, H. H., Lin, T. L., and Wang, J. T. (2010) CadC regulates cad and tdc operons in response to gastrointestinal stresses and enhances intestinal colonization of Klebsiella pneumoniae. J. Infect. Dis. 202, 52-64
-
(2010)
J. Infect. Dis.
, vol.202
, pp. 52-64
-
-
Hsieh, P.F.1
Lin, H.H.2
Lin, T.L.3
Wang, J.T.4
-
25
-
-
70349327690
-
Exploring the inner membrane proteome of escherichia coli: Which proteins are eluding detection and why?
-
Bernsel, A., and Daley, D. O. (2009) Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why? Trends Microbiol. 17, 444-449
-
(2009)
Trends Microbiol.
, vol.17
, pp. 444-449
-
-
Bernsel, A.1
Daley, D.O.2
-
26
-
-
50049135906
-
Proteome of the escherichia coli envelope and technological challenges in membrane proteome analysis
-
Weiner, J. H., and Li, L. (2008) Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis. Biochim. Biophys. Acta 1778, 1698-1713
-
(2008)
Biochim. Biophys. Acta
, vol.1778
, pp. 1698-1713
-
-
Weiner, J.H.1
Li, L.2
-
27
-
-
58549098512
-
Distinct activities of escherichia coli small heat shock proteins IbpA and IbpB promote efficient protein disaggregation
-
Ratajczak, E., Zietkiewicz, S., and Liberek, K. (2009) Distinct activities of Escherichia coli small heat shock proteins IbpA and IbpB promote efficient protein disaggregation. J. Mol. Biol. 386, 178-189
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 178-189
-
-
Ratajczak, E.1
Zietkiewicz, S.2
Liberek, K.3
-
28
-
-
66249114348
-
Characterization of the role of the escherichia coli periplasmic chaperone SurA using differential proteomics
-
Vertommen, D., Ruiz, N., Leverrier, P., Silhavy, T. J., and Collet, J. F. (2009) Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics. Proteomics 9, 2432-2443
-
(2009)
Proteomics
, vol.9
, pp. 2432-2443
-
-
Vertommen, D.1
Ruiz, N.2
Leverrier, P.3
Silhavy, T.J.4
Collet, J.F.5
-
29
-
-
84861172996
-
Dissecting the escherichia coli periplasmic chaperone network using differential proteomics
-
Denoncin, K., Schwalm, J., Vertommen, D., Silhavy, T. J., and Collet, J. F. (2012) Dissecting the Escherichia coli periplasmic chaperone network using differential proteomics. Proteomics 12, 1391-1401
-
(2012)
Proteomics
, vol.12
, pp. 1391-1401
-
-
Denoncin, K.1
Schwalm, J.2
Vertommen, D.3
Silhavy, T.J.4
Collet, J.F.5
-
30
-
-
0033580880
-
Structure of the escherichia coli fumarate reductase respiratory complex
-
Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Structure of the Escherichia coli fumarate reductase respiratory complex. Science 284, 1961-1966
-
(1999)
Science
, vol.284
, pp. 1961-1966
-
-
Iverson, T.M.1
Luna-Chavez, C.2
Cecchini, G.3
Rees, D.C.4
-
31
-
-
33846249493
-
Escherichia coli HdeB is an acid stress chaperone
-
Kern, R., Malki, A., Abdallah, J., Tagourti, J., and Richarme, G. (2007) Escherichia coli HdeB is an acid stress chaperone. J. Bacteriol. 189, 603-610
-
(2007)
J. Bacteriol.
, vol.189
, pp. 603-610
-
-
Kern, R.1
Malki, A.2
Abdallah, J.3
Tagourti, J.4
Richarme, G.5
-
32
-
-
0036231445
-
Expression of the escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products
-
Wyborn, N. R., Messenger, S. L., Henderson, R. A., Sawers, G., Roberts, R. E., Attwood, M. M., and Green, J. (2002) Expression of the Escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products. Microbiology 148, 1015-1026
-
(2002)
Microbiology
, vol.148
, pp. 1015-1026
-
-
Wyborn, N.R.1
Messenger, S.L.2
Henderson, R.A.3
Sawers, G.4
Roberts, R.E.5
Attwood, M.M.6
Green, J.7
-
33
-
-
84862501228
-
The twin-arginine translocation (tat) protein export pathway
-
Palmer, T., and Berks, B. C. (2012) The twin-arginine translocation (tat) protein export pathway. Nat. Rev. Microbiol. 10, 483-496
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 483-496
-
-
Palmer, T.1
Berks, B.C.2
-
34
-
-
84902290560
-
The membrane insertase YidC
-
Dalbey, R. E., Kuhn, A., Zhu, L., and Kiefer, D. (2014) The membrane insertase YidC. Biochim. Biophys. Acta 1843, 1489-1496
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 1489-1496
-
-
Dalbey, R.E.1
Kuhn, A.2
Zhu, L.3
Kiefer, D.4
-
35
-
-
33744522928
-
Defining the role of the escherichia coli chaperone SecB using comparative proteomics
-
Baars, L., Ytterberg, A. J., Drew, D., Wagner, S., Thilo, C., van Wijk, K. J., and de Gier, J. W. (2006) Defining the role of the Escherichia coli chaperone SecB using comparative proteomics. J. Biol. Chem. 281, 10024-10034
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 10024-10034
-
-
Baars, L.1
Ytterberg, A.J.2
Drew, D.3
Wagner, S.4
Thilo, C.5
Van Wijk, K.J.6
De Gier, J.W.7
-
36
-
-
77956555964
-
Differential effect of YidC depletion on the membrane proteome of escherichia coli under aerobic and anaerobic growth conditions
-
Price, C. E., Otto, A., Fusetti, F., Becher, D., Hecker, M., and Driessen, A. J. (2010) Differential effect of YidC depletion on the membrane proteome of Escherichia coli under aerobic and anaerobic growth conditions. Proteomics 10, 3235-3247
-
(2010)
Proteomics
, vol.10
, pp. 3235-3247
-
-
Price, C.E.1
Otto, A.2
Fusetti, F.3
Becher, D.4
Hecker, M.5
Driessen, A.J.6
-
37
-
-
47049106943
-
Effects of SecE depletion on the inner and outer membrane proteomes of escherichia coli
-
Baars, L., Wagner, S., Wickstrom, D., Klepsch, M., Ytterberg, A. J., van Wijk, K. J., and de Gier, J. W. (2008) Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli. J. Bacteriol. 190, 3505-3525
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3505-3525
-
-
Baars, L.1
Wagner, S.2
Wickstrom, D.3
Klepsch, M.4
Ytterberg, A.J.5
Van Wijk, K.J.6
De Gier, J.W.7
-
38
-
-
80052967509
-
A genetically incorporated crosslinker reveals chaperone cooperation in acid resistance
-
Zhang, M., Lin, S., Song, X., Liu, J., Fu, Y., Ge, X., Fu, X., Chang, Z., and Chen, P. R. (2011) A genetically incorporated crosslinker reveals chaperone cooperation in acid resistance. Nat. Chem. Biol. 7, 671-677
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 671-677
-
-
Zhang, M.1
Lin, S.2
Song, X.3
Liu, J.4
Fu, Y.5
Ge, X.6
Fu, X.7
Chang, Z.8
Chen, P.R.9
-
40
-
-
11144263144
-
PH regulates genes for flagellar motility, catabolism, and oxidative stress in escherichia coli K-12
-
Maurer, L. M., Yohannes, E., Bondurant, S. S., Radmacher, M., and Slonczewski, J. L. (2005) pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J. Bacteriol. 187, 304-319
-
(2005)
J. Bacteriol.
, vol.187
, pp. 304-319
-
-
Maurer, L.M.1
Yohannes, E.2
Bondurant, S.S.3
Radmacher, M.4
Slonczewski, J.L.5
-
41
-
-
69949141185
-
Acid-stress-induced changes in enterohaemorrhagic escherichia coli O157: H7 virulence
-
House, B., Kus, J. V., Prayitno, N., Mair, R., Que, L., Chingcuanco, F., Gannon, V., Cvitkovitch, D. G., and Barnett Foster, D. (2009) Acid-stress-induced changes in enterohaemorrhagic Escherichia coli O157: H7 virulence. Microbiology 155, 2907-2918
-
(2009)
Microbiology
, vol.155
, pp. 2907-2918
-
-
House, B.1
Kus, J.V.2
Prayitno, N.3
Mair, R.4
Que, L.5
Chingcuanco, F.6
Gannon, V.7
Cvitkovitch, D.G.8
Barnett Foster, D.9
-
42
-
-
80053189299
-
A systems biology approach sheds new light on escherichia coli acid resistance
-
Stincone, A., Daudi, N., Rahman, A. S., Antczak, P., Henderson, I., Cole, J., Johnson, M. D., Lund, P., and Falciani, F. (2011) A systems biology approach sheds new light on Escherichia coli acid resistance. Nucleic Acids Res. 39, 7512-7528
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7512-7528
-
-
Stincone, A.1
Daudi, N.2
Rahman, A.S.3
Antczak, P.4
Henderson, I.5
Cole, J.6
Johnson, M.D.7
Lund, P.8
Falciani, F.9
-
43
-
-
43249083977
-
Rapid acid treatment of escherichia coli: Transcriptomic response and recovery
-
Kannan, G., Wilks, J. C., Fitzgerald, D. M., Jones, B. D., Bondurant, S. S., and Slonczewski, J. L. (2008) Rapid acid treatment of Escherichia coli: Transcriptomic response and recovery. BMC Microbiol. 8, 37-2180-8-37
-
(2008)
BMC Microbiol.
, vol.8
, pp. 3721808-37218037
-
-
Kannan, G.1
Wilks, J.C.2
Fitzgerald, D.M.3
Jones, B.D.4
Bondurant, S.S.5
Slonczewski, J.L.6
|