-
1
-
-
0033788953
-
The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site
-
Abramson J, Riistama S, Larsson G, Jasaitis A, Svensson-Ek M, et al. 2000. The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site. Nat. Struct. Biol. 7:910-17
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 910-917
-
-
Abramson, J.1
Riistama, S.2
Larsson, G.3
Jasaitis, A.4
Svensson-Ek, M.5
-
2
-
-
28244457359
-
Separate ion pathways in a Cl-/H+ exchanger
-
Accardi A, Walden M, Nguitragool W, Jayaram H, Williams C, Miller C. 2005. Separate ion pathways in a Cl-/H+ exchanger. J. Gen. Physiol. 126:563-70
-
(2005)
J. Gen. Physiol.
, vol.126
, pp. 563-570
-
-
Accardi, A.1
Walden, M.2
Nguitragool, W.3
Jayaram, H.4
Williams, C.5
Miller, C.6
-
3
-
-
49249126658
-
Crystallization and preliminary X-ray analysis of the inducible lysine decarboxylase from Escherichia coli
-
Alexopoulos E, Kanjee U, Snider J, Houry WA, Pai EF. 2008. Crystallization and preliminary X-ray analysis of the inducible lysine decarboxylase from Escherichia coli. Acta Crystallogr. F 64:700-6
-
(2008)
Acta Crystallogr.
, vol.64
, pp. 700-706
-
-
Alexopoulos, E.1
Kanjee, U.2
Snider, J.3
Houry, W.A.4
Pai, E.F.5
-
4
-
-
66149132248
-
Crystal structure of the acid-induced arginine decarboxylase from Escherichia coli: Reversible decamer assembly controls enzyme activity
-
Andrell J, Hicks MG, Palmer T, Carpenter EP, Iwata S, Maher MJ. 2009. Crystal structure of the acid-induced arginine decarboxylase from Escherichia coli: Reversible decamer assembly controls enzyme activity. Biochemistry 48:3915-27
-
(2009)
Biochemistry
, vol.48
, pp. 3915-3927
-
-
Andrell, J.1
Hicks, M.G.2
Palmer, T.3
Carpenter, E.P.4
Iwata, S.5
Maher, M.J.6
-
5
-
-
0016764372
-
Biodegradative ornithine decarboxylase of Escherichia coli. Purification, properties, and pyridoxal 5′-phosphate binding site
-
Applebaum D, Sabo DL, Fischer EH, Morris DR. 1975. Biodegradative ornithine decarboxylase of Escherichia coli. Purification, properties, and pyridoxal 5′-phosphate binding site. Biochemistry 14:3675-81
-
(1975)
Biochemistry
, vol.14
, pp. 3675-3681
-
-
Applebaum, D.1
Sabo, D.L.2
Fischer, E.H.3
Morris, D.R.4
-
6
-
-
33748456679
-
Crystal structure of osmoporin OmpC from E. coli at 2.0 Å
-
Basle A, Rummel G, Storici P, Rosenbusch JP, Schirmer T. 2006. Crystal structure of osmoporin OmpC from E. coli at 2.0 Å . J. Mol. Biol. 362:933-42
-
(2006)
J. Mol. Biol.
, vol.362
, pp. 933-942
-
-
Basle, A.1
Rummel, G.2
Storici, P.3
Rosenbusch, J.P.4
Schirmer, T.5
-
7
-
-
0014429449
-
Arginine decarboxylase from Escherichia coli. I. Purification and specificity for substrates and coenzyme
-
Blethen SL, Boeker EA, Snell EE. 1968. Arginine decarboxylase from Escherichia coli. I. Purification and specificity for substrates and coenzyme. J. Biol. Chem. 243:1671-77
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 1671-1677
-
-
Blethen, S.L.1
Boeker, E.A.2
Snell, E.E.3
-
8
-
-
0030826911
-
Acid habituation of Escherichia coli and the potential role of cyclopropane fatty acids in low pH tolerance
-
Brown JL, Ross T, McMeekin TA, Nichols PD. 1997. Acid habituation of Escherichia coli and the potential role of cyclopropane fatty acids in low pH tolerance. Int. J. Food Microbiol. 37:163-73
-
(1997)
Int. J. Food Microbiol.
, vol.37
, pp. 163-173
-
-
Brown, J.L.1
Ross, T.2
McMeekin, T.A.3
Nichols, P.D.4
-
9
-
-
78650976369
-
Structure, function and regulation of the DNA-binding protein Dps and its role in acid and oxidative stress resistance in Escherichia coli: A review
-
Calhoun LN, Kwon YM. 2011. Structure, function and regulation of the DNA-binding protein Dps and its role in acid and oxidative stress resistance in Escherichia coli: a review. J. Appl. Microbiol. 110:375-86
-
(2011)
J. Appl. Microbiol.
, vol.110
, pp. 375-386
-
-
Calhoun, L.N.1
Kwon, Y.M.2
-
10
-
-
0041465717
-
Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase
-
Capitani G, De Biase D, Aurizi C, Gut H, Bossa F, Grutter MG. 2003. Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase. EMBO J. 22:4027-37
-
(2003)
EMBO J.
, vol.22
, pp. 4027-4037
-
-
Capitani, G.1
De Biase, D.2
Aurizi, C.3
Gut, H.4
Bossa, F.5
Grutter, M.G.6
-
11
-
-
77954313305
-
Acid stress response in Escherichia coli: Mechanism of regulation of gadA transcription by RcsB and GadE
-
Castanie-Cornet MP, Cam K, Bastiat B, Cros A, Bordes P, Gutierrez C. 2010. Acid stress response in Escherichia coli: mechanism of regulation of gadA transcription by RcsB and GadE. Nucleic Acids Res. 38:3546-54
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3546-3554
-
-
Castanie-Cornet, M.P.1
Cam, K.2
Bastiat, B.3
Cros, A.4
Bordes, P.5
Gutierrez, C.6
-
12
-
-
0035086021
-
Escherichia coli acid resistance: CAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes
-
Castanie-Cornet MP, Foster JW. 2001. Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes. Microbiology 147:709-15
-
(2001)
Microbiology
, vol.147
, pp. 709-715
-
-
Castanie-Cornet, M.P.1
Foster, J.W.2
-
13
-
-
0033000806
-
Control of acid resistance in Escherichia coli
-
Castanie-Cornet MP, Penfound TA, Smith D, Elliott JF, Foster JW. 1999. Control of acid resistance in Escherichia coli. J. Bacteriol. 181:3525-35
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3525-3535
-
-
Castanie-Cornet, M.P.1
Penfound, T.A.2
Smith, D.3
Elliott, J.F.4
Foster, J.W.5
-
14
-
-
0033054689
-
Membrane cyclopropane fatty acid content is a major factor in acid resistance of Escherichia coli
-
Chang YY, Cronan JE Jr. 1999. Membrane cyclopropane fatty acid content is a major factor in acid resistance of Escherichia coli. Mol. Microbiol. 33:249-59
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 249-259
-
-
Chang, Y.Y.1
Cronan Jr., J.E.2
-
15
-
-
0033823598
-
Contribution of dps to acid stress tolerance and oxidative stress tolerance in Escherichia coli O157:H7
-
Choi SH, Baumler DJ, Kaspar CW. 2000. Contribution of dps to acid stress tolerance and oxidative stress tolerance in Escherichia coli O157:H7. Appl. Environ. Microbiol. 66:3911-16
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3911-3916
-
-
Choi, S.H.1
Baumler, D.J.2
Kaspar, C.W.3
-
16
-
-
0026779245
-
Crystal structures explain functional properties of two E. coli porins
-
Cowan SW, Schirmer T, Rummel G, Steiert M, Ghosh R, et al. 1992. Crystal structures explain functional properties of two E. coli porins. Nature 358:727-33
-
(1992)
Nature
, vol.358
, pp. 727-733
-
-
Cowan, S.W.1
Schirmer, T.2
Rummel, G.3
Steiert, M.4
Ghosh, R.5
-
17
-
-
0033037702
-
The response to stationary-phase stress conditions in Escherichia coli: Role and regulation of the glutamic acid decarboxylase system
-
De Biase D, Tramonti A, Bossa F, Visca P. 1999. The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol. Microbiol. 32:1198-211
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 1198-1211
-
-
De Biase, D.1
Tramonti, A.2
Bossa, F.3
Visca, P.4
-
19
-
-
0028828533
-
Cadaverine induces closing of E. coli porins
-
delaVega AL, Delcour AH. 1995. Cadaverine induces closing of E. coli porins. EMBO J. 14:6058-65
-
(1995)
EMBO J.
, vol.14
, pp. 6058-6065
-
-
Delavega, A.L.1
Delcour, A.H.2
-
20
-
-
24044437199
-
Structure of Escherichia coli glutamate decarboxylase (GADα) in complex with glutarate at 2.05 Å resolution
-
Dutyshev DI, Darii EL, Fomenkova NP, Pechik IV, Polyakov KM, et al. 2005. Structure of Escherichia coli glutamate decarboxylase (GADα) in complex with glutarate at 2.05 Å resolution. Acta Crystallogr. D 61:230-35
-
(2005)
Acta Crystallogr. D
, vol.61
, pp. 230-235
-
-
Dutyshev, D.I.1
Darii, E.L.2
Fomenkova, N.P.3
Pechik, I.V.4
Polyakov, K.M.5
-
21
-
-
0037122805
-
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
-
Dutzler R, Campbell EB, Cadene M, Chait BT, MacKinnon R. 2002. X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity. Nature 415:287-94
-
(2002)
Nature
, vol.415
, pp. 287-294
-
-
Dutzler, R.1
Campbell, E.B.2
Cadene, M.3
Chait, B.T.4
Mackinnon, R.5
-
22
-
-
0037418859
-
Gating the selectivity filter in ClC chloride channels
-
Dutzler R, Campbell EB, MacKinnon R. 2003. Gating the selectivity filter in ClC chloride channels. Science 300:108-12
-
(2003)
Science
, vol.300
, pp. 108-112
-
-
Dutzler, R.1
Campbell, E.B.2
Mackinnon, R.3
-
23
-
-
77952979824
-
The architecture of respiratory complex i
-
Efremov RG, Baradaran R, Sazanov LA. 2010. The architecture of respiratory complex I. Nature 465:441-45
-
(2010)
Nature
, vol.465
, pp. 441-445
-
-
Efremov, R.G.1
Baradaran, R.2
Sazanov, L.A.3
-
24
-
-
79953224088
-
Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family
-
Eichinger A, Haneburger I, Koller C, Jung K, Skerra A. 2011. Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family. Protein Sci. 20:656-69
-
(2011)
Protein Sci.
, vol.20
, pp. 656-669
-
-
Eichinger, A.1
Haneburger, I.2
Koller, C.3
Jung, K.4
Skerra, A.5
-
25
-
-
69249220125
-
Structure of a prokaryotic virtual proton pump at 3.2 A resolution
-
Fang Y, Jayaram H, Shane T, Kolmakova-Partensky L, Wu F, et al. 2009. Structure of a prokaryotic virtual proton pump at 3.2 A resolution. Nature 460:1040-43
-
(2009)
Nature
, vol.460
, pp. 1040-1043
-
-
Fang, Y.1
Jayaram, H.2
Shane, T.3
Kolmakova-Partensky, L.4
Wu, F.5
-
26
-
-
33846963817
-
A bacterial arginine-agmatine exchange transporter involved in extreme acid resistance
-
Fang Y, Kolmakova-Partensky L, Miller C. 2007. A bacterial arginine-agmatine exchange transporter involved in extreme acid resistance. J. Biol. Chem. 282:176-82
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 176-182
-
-
Fang, Y.1
Kolmakova-Partensky, L.2
Miller, C.3
-
27
-
-
9444285788
-
Escherichia coli acid resistance: Tales of an amateur acidophile
-
Foster JW. 2004. Escherichia coli acid resistance: tales of an amateur acidophile. Nat. Rev. Microbiol. 2:898-907
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 898-907
-
-
Foster, J.W.1
-
28
-
-
0034695425
-
HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria
-
Gajiwala KS, Burley SK. 2000. HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. J. Mol. Biol. 295:605-12
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 605-612
-
-
Gajiwala, K.S.1
Burley, S.K.2
-
29
-
-
0011835137
-
Studies on bacterial amino-acid decarboxylases: 1. l(+)-lysine decarboxylase
-
Gale EF, Epps HM. 1944. Studies on bacterial amino-acid decarboxylases: 1. l(+)-lysine decarboxylase. Biochem. J. 38:232-42
-
(1944)
Biochem. J.
, vol.38
, pp. 232-242
-
-
Gale, E.F.1
Epps, H.M.2
-
30
-
-
67649200539
-
Structure and mechanism of an amino acid antiporter
-
Gao X, Lu F, Zhou L, Dang S, Sun L, et al. 2009. Structure and mechanism of an amino acid antiporter. Science 324:1565-68
-
(2009)
Science
, vol.324
, pp. 1565-1568
-
-
Gao, X.1
Lu, F.2
Zhou, L.3
Dang, S.4
Sun, L.5
-
31
-
-
76749095057
-
Mechanism of substrate recognition and transport by an amino acid antiporter
-
Gao X, Zhou L, Jiao X, Lu F, Yan C, et al. 2010. Mechanism of substrate recognition and transport by an amino acid antiporter. Nature 463:828-32
-
(2010)
Nature
, vol.463
, pp. 828-832
-
-
Gao, X.1
Zhou, L.2
Jiao, X.3
Lu, F.4
Yan, C.5
-
32
-
-
8544280704
-
The Era-like GTPase TrmE conditionally activates gadE and glutamate-dependent acid resistance in Escherichia coli
-
Gong S, Ma Z, Foster JW. 2004. The Era-like GTPase TrmE conditionally activates gadE and glutamate-dependent acid resistance in Escherichia coli. Mol. Microbiol. 54:948-61
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 948-961
-
-
Gong, S.1
Ma, Z.2
Foster, J.W.3
-
33
-
-
0027390911
-
Acid resistance in enteric bacteria
-
Gorden J, Small PL. 1993. Acid resistance in enteric bacteria. Infect. Immun. 61:364-67
-
(1993)
Infect. Immun.
, vol.61
, pp. 364-367
-
-
Gorden, J.1
Small, P.L.2
-
34
-
-
0031959912
-
The crystal structure of Dps, a ferritin homolog that binds and protects DNA
-
Grant RA, Filman DJ, Finkel SE, Kolter R, Hogle JM. 1998. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5:294-303
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 294-303
-
-
Grant, R.A.1
Filman, D.J.2
Finkel, S.E.3
Kolter, R.4
Hogle, J.M.5
-
35
-
-
0029046782
-
Modeling of the spatial structure of eukaryotic ornithine decarboxylases
-
Grishin NV, Phillips MA, Goldsmith EJ. 1995. Modeling of the spatial structure of eukaryotic ornithine decarboxylases. Protein Sci. 4:1291-304
-
(1995)
Protein Sci.
, vol.4
, pp. 1291-1304
-
-
Grishin, N.V.1
Phillips, M.A.2
Goldsmith, E.J.3
-
36
-
-
0029886938
-
The survival benefit of short-chain organic acids and the inducible arginine and lysine decarboxylase genes for Escherichia coli
-
Guilfoyle DE, Hirshfield IN. 1996. The survival benefit of short-chain organic acids and the inducible arginine and lysine decarboxylase genes for Escherichia coli. Lett. Appl. Microbiol. 22:393-96
-
(1996)
Lett. Appl. Microbiol.
, vol.22
, pp. 393-396
-
-
Guilfoyle, D.E.1
Hirshfield, I.N.2
-
37
-
-
33745752814
-
Escherichia coli acid resistance: PH-sensing, activation by chloride and autoinhibition in GadB
-
Gut H, Pennacchietti E, John RA, Bossa F, Capitani G, et al. 2006. Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. EMBO J. 25:2643-51
-
(2006)
EMBO J.
, vol.25
, pp. 2643-2651
-
-
Gut, H.1
Pennacchietti, E.2
John, R.A.3
Bossa, F.4
Capitani, G.5
-
38
-
-
33750500341
-
Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12
-
Hayes ET, Wilks JC, Sanfilippo P, Yohannes E, Tate DP, et al. 2006. Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. BMC Microbiol. 6:89
-
(2006)
BMC Microbiol.
, vol.6
, pp. 89
-
-
Hayes, E.T.1
Wilks, J.C.2
Sanfilippo, P.3
Yohannes, E.4
Tate, D.P.5
-
39
-
-
73849131808
-
Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: Analysis of a bar-codedmutant collection
-
Hobbs EC, Astarita JL, Storz G. 2010. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-codedmutant collection. J. Bacteriol. 192:59-67
-
(2010)
J. Bacteriol.
, vol.192
, pp. 59-67
-
-
Hobbs, E.C.1
Astarita, J.L.2
Storz, G.3
-
40
-
-
0034856940
-
Chaperone-assisted protein folding in the cell cytoplasm
-
Houry WA. 2001. Chaperone-assisted protein folding in the cell cytoplasm. Curr. Protein Pept. Sci. 2:227-44
-
(2001)
Curr. Protein Pept. Sci.
, vol.2
, pp. 227-244
-
-
Houry, W.A.1
-
41
-
-
0037126294
-
A biological role for prokaryotic ClC chloride channels
-
Iyer R, Iverson TM, Accardi A, Miller C. 2002. A biological role for prokaryotic ClC chloride channels. Nature 419:715-18
-
(2002)
Nature
, vol.419
, pp. 715-718
-
-
Iyer, R.1
Iverson, T.M.2
Accardi, A.3
Miller, C.4
-
42
-
-
0033886562
-
The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations
-
Jack DL, Paulsen IT, Saier MH. 2000. The amino acid/polyamine/ organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations. Microbiology 146(Pt. 8):1797-814
-
(2000)
Microbiology
, vol.146
, Issue.PART 8
, pp. 1797-1814
-
-
Jack, D.L.1
Paulsen, I.T.2
Saier, M.H.3
-
43
-
-
0242538842
-
Crystal structure of diaminopelargonic acid synthase: Evolutionary relationships between pyridoxal-5′-phosphate-dependent enzymes
-
Käck H, Sandmark J, Gibson K, Schneider G, Lindqvist Y. 1999. Crystal structure of diaminopelargonic acid synthase: evolutionary relationships between pyridoxal-5′-phosphate-dependent enzymes. J. Mol. Biol. 291:857-76
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 857-876
-
-
Kck, H.1
Sandmark, J.2
Gibson, K.3
Schneider, G.4
Lindqvist, Y.5
-
44
-
-
79952280501
-
Linking the bacterial acid stress and stringent responses: The structure of the inducible lysine decarboxylase
-
Kanjee U, Gutsche I, Alexopoulos E, Zhao B, Thibault G, et al. 2011. Linking the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase. EMBO J. 30:931-44
-
(2011)
EMBO J.
, vol.30
, pp. 931-944
-
-
Kanjee, U.1
Gutsche, I.2
Alexopoulos, E.3
Zhao, B.4
Thibault, G.5
-
45
-
-
80055008762
-
The enzymatic activities of the Escherichia coli basic aliphatic amino acid decarboxylases exhibit a pH zone of inhibition
-
Kanjee U, Gutsche I, Ramachandran S, Houry W. 2011. The enzymatic activities of the Escherichia coli basic aliphatic amino acid decarboxylases exhibit a pH zone of inhibition. Biochemistry 50:9388-98
-
(2011)
Biochemistry
, vol.50
, pp. 9388-9398
-
-
Kanjee, U.1
Gutsche, I.2
Ramachandran, S.3
Houry, W.4
-
46
-
-
84866038398
-
Direct binding targets of the stringent response alarmone (p)ppGpp
-
Kanjee U, Ogata K, Houry WA. 2012. Direct binding targets of the stringent response alarmone (p)ppGpp. Mol. Microbiol. 85:1029-43
-
(2012)
Mol. Microbiol.
, vol.85
, pp. 1029-1043
-
-
Kanjee, U.1
Ogata, K.2
Houry, W.A.3
-
47
-
-
0025720216
-
Coexistence of the genes for putrescine transport protein and ornithine decarboxylase at 16 min on Escherichia coli chromosome
-
Kashiwagi K, Suzuki T, Suzuki F, Furuchi T, Kobayashi H, Igarashi K. 1991. Coexistence of the genes for putrescine transport protein and ornithine decarboxylase at 16 min on Escherichia coli chromosome. J. Biol. Chem. 266:20922-27
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 20922-20927
-
-
Kashiwagi, K.1
Suzuki, T.2
Suzuki, F.3
Furuchi, T.4
Kobayashi, H.5
Igarashi, K.6
-
48
-
-
33846249493
-
Escherichia coli HdeB is an acid stress chaperone
-
Kern R, Malki A, Abdallah J, Tagourti J, Richarme G. 2007. Escherichia coli HdeB is an acid stress chaperone. J. Bacteriol. 189:603-10
-
(2007)
J. Bacteriol.
, vol.189
, pp. 603-610
-
-
Kern, R.1
Malki, A.2
Abdallah, J.3
Tagourti, J.4
Richarme, G.5
-
49
-
-
79952767504
-
Molecular basis of substrate-induced permeation by an amino acid antiporter
-
Kowalczyk L, Ratera M, Paladino A, Bartoccioni P, Errasti-Murugarren E, et al. 2011. Molecular basis of substrate-induced permeation by an amino acid antiporter. Proc. Natl. Acad. Sci. USA 108:3935-40
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3935-3940
-
-
Kowalczyk, L.1
Ratera, M.2
Paladino, A.3
Bartoccioni, P.4
Errasti-Murugarren, E.5
-
50
-
-
79954784829
-
Molecular aspects of bacterial pH sensing and homeostasis
-
Krulwich TA, Sachs G, Padan E. 2011. Molecular aspects of bacterial pH sensing and homeostasis. Nat. Rev. Microbiol. 9:330-43
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 330-343
-
-
Krulwich, T.A.1
Sachs, G.2
Padan, E.3
-
51
-
-
0014149017
-
Studies on amino acid decarboxylases in Escherichia coli
-
Lawson A, Quinn AG. 1967. Studies on amino acid decarboxylases in Escherichia coli. Biochem. J. 105:483-90
-
(1967)
Biochem. J.
, vol.105
, pp. 483-490
-
-
Lawson, A.1
Quinn, A.G.2
-
52
-
-
34548598563
-
Structure and function of the Escherichia coli protein YmgB: A protein critical for biofilm formation and acid resistance
-
Lee J, Page R, Garcia-Contreras R, Palermino JM, Zhang XS, et al. 2007. Structure and function of the Escherichia coli protein YmgB: a protein critical for biofilm formation and acid resistance. J. Mol. Biol. 373:11-26
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 11-26
-
-
Lee, J.1
Page, R.2
Garcia-Contreras, R.3
Palermino, J.M.4
Zhang, X.S.5
-
53
-
-
0029073161
-
Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli
-
Lin J, Lee IS, Frey J, Slonczewski JL, Foster JW. 1995. Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J. Bacteriol. 177:4097-104
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4097-4104
-
-
Lin, J.1
Lee, I.S.2
Frey, J.3
Slonczewski, J.L.4
Foster, J.W.5
-
54
-
-
0029832195
-
Mechanisms of acid resistance in enterohemorrhagic Escherichia coli
-
Lin J, Smith MP, Chapin KC, Baik HS, Bennett GN, Foster JW. 1996. Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Appl. Environ. Microbiol. 62:3094-100
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3094-3100
-
-
Lin, J.1
Smith, M.P.2
Chapin, K.C.3
Baik, H.S.4
Bennett, G.N.5
Foster, J.W.6
-
55
-
-
84862819559
-
Structure and mechanism of a glutamate-GABA antiporter
-
Ma D, Lu P, Yan C, Fan C, Yin P, et al. 2012. Structure and mechanism of a glutamate-GABA antiporter. Nature 483:632-36
-
(2012)
Nature
, vol.483
, pp. 632-636
-
-
Ma, D.1
Lu, P.2
Yan, C.3
Fan, C.4
Yin, P.5
-
56
-
-
11844269324
-
The periplasmic α-carbonic anhydrase activity of Helicobacter pylori is essential for acid acclimation
-
Marcus EA, Moshfegh AP, Sachs G, Scott DR. 2005. The periplasmic α-carbonic anhydrase activity of Helicobacter pylori is essential for acid acclimation. J. Bacteriol. 187:729-38
-
(2005)
J. Bacteriol.
, vol.187
, pp. 729-738
-
-
Marcus, E.A.1
Moshfegh, A.P.2
Sachs, G.3
Scott, D.R.4
-
57
-
-
34147172119
-
Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance
-
Mates AK, Sayed AK, Foster JW. 2007. Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance. J. Bacteriol. 189:2759-68
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2759-2768
-
-
Mates, A.K.1
Sayed, A.K.2
Foster, J.W.3
-
58
-
-
11144263144
-
PH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12
-
Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL. 2005. pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J. Bacteriol. 187:304-19
-
(2005)
J. Bacteriol.
, vol.187
, pp. 304-319
-
-
Maurer, L.M.1
Yohannes, E.2
Bondurant, S.S.3
Radmacher, M.4
Slonczewski, J.L.5
-
59
-
-
0000452053
-
Nutritional requirements for the formation of arginine decarboxylase in Escherichia coli
-
Melnykovych G, Snell EE. 1958. Nutritional requirements for the formation of arginine decarboxylase in Escherichia coli. J. Bacteriol. 76:518-23
-
(1958)
J. Bacteriol.
, vol.76
, pp. 518-523
-
-
Melnykovych, G.1
Snell, E.E.2
-
60
-
-
33947136225
-
The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids
-
Moreau PL. 2007. The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids. J. Bacteriol. 189:2249-61
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2249-2261
-
-
Moreau, P.L.1
-
61
-
-
33846896142
-
Chaperone Hsp31 contributes to acid resistance in stationary-phase Escherichia coli
-
Mujacic M, Baneyx F. 2007. Chaperone Hsp31 contributes to acid resistance in stationary-phase Escherichia coli. Appl. Environ. Microbiol. 73:1014-18
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1014-1018
-
-
Mujacic, M.1
Baneyx, F.2
-
62
-
-
77956330310
-
Hydrogenase-3 contributes to anaerobic acid resistance of Escherichia coli
-
Noguchi K, Riggins DP, Eldahan KC, Kitko RD, Slonczewski JL. 2010. Hydrogenase-3 contributes to anaerobic acid resistance of Escherichia coli. PLoS One 5:e10132
-
(2010)
PLoS One
, vol.5
-
-
Noguchi, K.1
Riggins, D.P.2
Eldahan, K.C.3
Kitko, R.D.4
Slonczewski, J.L.5
-
63
-
-
0019520373
-
The inducible arginine decarboxylase of Escherichia coli B: Activity of the dimer and the decamer
-
Nowak S, Boeker EA. 1981. The inducible arginine decarboxylase of Escherichia coli B: activity of the dimer and the decamer. Arch. Biochem. Biophys. 207:110-16
-
(1981)
Arch. Biochem. Biophys.
, vol.207
, pp. 110-116
-
-
Nowak, S.1
Boeker, E.A.2
-
64
-
-
0024512672
-
The human gastric bactericidal barrier: Mechanisms of action, relative antibacterial activity, and dietary influences
-
Peterson WL, Mackowiak PA, Barnett CC, Marling-Cason M, Haley ML. 1989. The human gastric bactericidal barrier: mechanisms of action, relative antibacterial activity, and dietary influences. J. Infect. Dis. 159:979-83
-
(1989)
J. Infect. Dis.
, vol.159
, pp. 979-983
-
-
Peterson, W.L.1
Mackowiak, P.A.2
Barnett, C.C.3
Marling-Cason, M.4
Haley, M.L.5
-
65
-
-
0347994107
-
A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function
-
Quigley PM, Korotkov K, Baneyx F, Hol WG. 2004. A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function. Protein Sci. 13:269-77
-
(2004)
Protein Sci.
, vol.13
, pp. 269-277
-
-
Quigley, P.M.1
Korotkov, K.2
Baneyx, F.3
Hol, W.G.4
-
66
-
-
4444226939
-
Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential
-
Richard H, Foster JW. 2004. Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential. J. Bacteriol. 186:6032-41
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6032-6041
-
-
Richard, H.1
Foster, J.W.2
-
67
-
-
34948835217
-
Sodium regulates Escherichia coli acid resistance, and influences GadX- and GadW-dependent activation of gadE
-
Richard H, Foster JW. 2007. Sodium regulates Escherichia coli acid resistance, and influences GadX- and GadW-dependent activation of gadE. Microbiology 153:3154-61
-
(2007)
Microbiology
, vol.153
, pp. 3154-3161
-
-
Richard, H.1
Foster, J.W.2
-
68
-
-
0026594089
-
The PhoE porin and transmission of the chemical stimulus for induction of acid resistance (acid habituation) in Escherichia coli
-
Rowbury RJ, Goodson M, Wallace AD. 1992. The PhoE porin and transmission of the chemical stimulus for induction of acid resistance (acid habituation) in Escherichia coli. J. Appl. Bacteriol. 72:233-43
-
(1992)
J. Appl. Bacteriol.
, vol.72
, pp. 233-243
-
-
Rowbury, R.J.1
Goodson, M.2
Wallace, A.D.3
-
69
-
-
38949193280
-
Role of the multidrug resistance regulator MarA in global regulation of the hdeAB acid resistance operon in Escherichia coli
-
Ruiz C, McMurry LM, Levy SB. 2008. Role of the multidrug resistance regulator MarA in global regulation of the hdeAB acid resistance operon in Escherichia coli. J. Bacteriol. 190:1290-97
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1290-1297
-
-
Ruiz, C.1
McMurry, L.M.2
Levy, S.B.3
-
70
-
-
0015957627
-
Purification and physical properties of inducible Escherichia coli lysine decarboxylase
-
Sabo DL, Boeker EA, Byers B, Waron H, Fischer EH. 1974. Purification and physical properties of inducible Escherichia coli lysine decarboxylase. Biochemistry 13:662-70
-
(1974)
Biochemistry
, vol.13
, pp. 662-670
-
-
Sabo, D.L.1
Boeker, E.A.2
Byers, B.3
Waron, H.4
Fischer, E.H.5
-
71
-
-
0037216548
-
Cadaverine inhibition of porin plays a role in cell survival at acidic pH
-
Samartzidou H, Mehrazin M, Xu Z, Benedik MJ, Delcour AH. 2003. Cadaverine inhibition of porin plays a role in cell survival at acidic pH. J. Bacteriol. 185:13-19
-
(2003)
J. Bacteriol.
, vol.185
, pp. 13-19
-
-
Samartzidou, H.1
Mehrazin, M.2
Xu, Z.3
Benedik, M.J.4
Delcour, A.H.5
-
72
-
-
0026725149
-
Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli
-
Sauter M, Bohm R, Bock A. 1992. Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli. Mol. Microbiol. 6:1523-32
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 1523-1532
-
-
Sauter, M.1
Bohm, R.2
Bock, A.3
-
73
-
-
33847687662
-
Respiratory complex I: Mechanistic and structural insights provided by the crystal structure of the hydrophilic domain
-
Sazanov LA. 2007. Respiratory complex I: mechanistic and structural insights provided by the crystal structure of the hydrophilic domain. Biochemistry 46:2275-88
-
(2007)
Biochemistry
, vol.46
, pp. 2275-2288
-
-
Sazanov, L.A.1
-
74
-
-
9644291930
-
Functional properties of the alternative NADH:ubiquinone oxidoreductase from E. coli through comparative 3-D modelling
-
Schmid R, Gerloff DL. 2004. Functional properties of the alternative NADH:ubiquinone oxidoreductase from E. coli through comparative 3-D modelling. FEBS Lett. 578:163-68
-
(2004)
FEBS Lett.
, vol.578
, pp. 163-168
-
-
Schmid, R.1
Gerloff, D.L.2
-
76
-
-
72849170954
-
Glutamic acid decarboxylase. I. Isolation procedures and properties of the enzyme
-
Shukuya R, Schwert GW. 1960. Glutamic acid decarboxylase. I. Isolation procedures and properties of the enzyme. J. Biol. Chem. 235:1649-52
-
(1960)
J. Biol. Chem.
, vol.235
, pp. 1649-1652
-
-
Shukuya, R.1
Schwert, G.W.2
-
78
-
-
1542721578
-
Excretion and uptake of cadaverine by CadB and its physiological functions in Escherichia coli
-
Soksawatmaekhin W, Kuraishi A, Sakata K, Kashiwagi K, Igarashi K. 2004. Excretion and uptake of cadaverine by CadB and its physiological functions in Escherichia coli. Mol. Microbiol. 51:1401-12
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1401-1412
-
-
Soksawatmaekhin, W.1
Kuraishi, A.2
Sakata, K.3
Kashiwagi, K.4
Igarashi, K.5
-
79
-
-
33749376764
-
Identification of the cadaverine recognition site on the cadaverine-lysine antiporter CadB
-
Soksawatmaekhin W, Uemura T, Fukiwake N, Kashiwagi K, Igarashi K. 2006. Identification of the cadaverine recognition site on the cadaverine-lysine antiporter CadB. J. Biol. Chem. 281:29213-20
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29213-29220
-
-
Soksawatmaekhin, W.1
Uemura, T.2
Fukiwake, N.3
Kashiwagi, K.4
Igarashi, K.5
-
80
-
-
75749153007
-
Protein refolding by pH-triggered chaperone binding and release
-
Tapley TL, Franzmann TM, Chakraborty S, Jakob U, Bardwell JC. 2010. Protein refolding by pH-triggered chaperone binding and release. Proc. Natl. Acad. Sci. USA 107:1071-76
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1071-1076
-
-
Tapley, T.L.1
Franzmann, T.M.2
Chakraborty, S.3
Jakob, U.4
Bardwell, J.C.5
-
81
-
-
79953901438
-
Detection and function of an intramolecular disulfide bond in the pH-responsive CadC of Escherichia coli
-
Tetsch L, Koller C, Donhofer A, Jung K. 2011. Detection and function of an intramolecular disulfide bond in the pH-responsive CadC of Escherichia coli. BMC Microbiol. 11:74
-
(2011)
BMC Microbiol.
, vol.11
, pp. 74
-
-
Tetsch, L.1
Koller, C.2
Donhofer, A.3
Jung, K.4
-
82
-
-
37749014565
-
The membrane-integrated transcriptional activator CadC of Escherichia coli senses lysine indirectly via the interaction with the lysine permease LysP
-
Tetsch L, Koller C, Haneburger I, Jung K. 2007. The membrane-integrated transcriptional activator CadC of Escherichia coli senses lysine indirectly via the interaction with the lysine permease LysP. Mol. Microbiol. 67:570-83
-
(2007)
Mol. Microbiol.
, vol.67
, pp. 570-583
-
-
Tetsch, L.1
Koller, C.2
Haneburger, I.3
Jung, K.4
-
83
-
-
0004221085
-
-
St. Louis, MO: C.V. Mosby Co
-
Texter EC Jr, Chou CC, Laurete HC, Vantrappen GR, eds. 1968. Physiology of the Gastrointestinal Tract. St. Louis, MO: C.V. Mosby Co. 262 pp.
-
(1968)
Physiology of the Gastrointestinal Tract
, pp. 262
-
-
Texter Jr., E.C.1
Chou, C.C.2
Laurete, H.C.3
Vantrappen, G.R.4
-
84
-
-
84861656595
-
Structure and function of polyamine-amino acid antiporters CadB and PotE in Escherichia coli
-
Tomitori H, Kashiwagi K, Igarashi K. 2012. Structure and function of polyamine-amino acid antiporters CadB and PotE in Escherichia coli. Amino Acids 42:733-40
-
(2012)
Amino Acids
, vol.42
, pp. 733-740
-
-
Tomitori, H.1
Kashiwagi, K.2
Igarashi, K.3
-
85
-
-
54249135920
-
GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: Transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites
-
Tramonti A, De Canio M, De Biase D. 2008. GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites. Mol. Microbiol. 70:965-82
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 965-982
-
-
Tramonti, A.1
De Canio, M.2
De Biase, D.3
-
86
-
-
0036237890
-
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system
-
Tramonti A, Visca P, De Canio M, Falconi M, De Biase D. 2002. Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system. J. Bacteriol. 184:2603-13
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2603-2613
-
-
Tramonti, A.1
Visca, P.2
De Canio, M.3
Falconi, M.4
De Biase, D.5
-
87
-
-
84863405467
-
Sided functions of an arginine-agmatine antiporter oriented in liposomes
-
Tsai MF, Fang Y, Miller C. 2012. Sided functions of an arginine-agmatine antiporter oriented in liposomes. Biochemistry 51:1577-85
-
(2012)
Biochemistry
, vol.51
, pp. 1577-1585
-
-
Tsai, M.F.1
Fang, Y.2
Miller, C.3
-
88
-
-
0036889029
-
Gene expression profiling of the pH response in Escherichia coli
-
Tucker DL, Tucker N, Conway T. 2002. Gene expression profiling of the pH response in Escherichia coli. J. Bacteriol. 184:6551-58
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6551-6558
-
-
Tucker, D.L.1
Tucker, N.2
Conway, T.3
-
89
-
-
0029839533
-
Identification of σs-dependent genes associated with the stationary-phase acid-resistance phenotype of Shigella flexneri
-
Waterman SR, Small PL. 1996. Identification of σS-dependent genes associated with the stationary-phase acid-resistance phenotype of Shigella flexneri. Mol. Microbiol. 21:925-40
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 925-940
-
-
Waterman, S.R.1
Small, P.L.2
-
90
-
-
0026542813
-
Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH
-
Watson N, Dunyak DS, Rosey EL, Slonczewski JL, Olson ER. 1992. Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH. J. Bacteriol. 174:530-40
-
(1992)
J. Bacteriol.
, vol.174
, pp. 530-540
-
-
Watson, N.1
Dunyak, D.S.2
Rosey, E.L.3
Slonczewski, J.L.4
Olson, E.R.5
-
91
-
-
34547634728
-
PH of the cytoplasm and periplasm of Escherichia coli: Rapid measurement by green fluorescent protein fluorimetry
-
Wilks JC, Slonczewski JL. 2007. pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J. Bacteriol. 189:5601-7
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5601-5607
-
-
Wilks, J.C.1
Slonczewski, J.L.2
-
92
-
-
0348150715
-
Architecture of succinate dehydrogenase and reactive oxygen species generation
-
Yankovskaya V, Horsefield R, Tornroth S, Luna-Chavez C, Miyoshi H, et al. 2003. Architecture of succinate dehydrogenase and reactive oxygen species generation. Science 299:700-4
-
(2003)
Science
, vol.299
, pp. 700-704
-
-
Yankovskaya, V.1
Horsefield, R.2
Tornroth, S.3
Luna-Chavez, C.4
Miyoshi, H.5
-
93
-
-
2942620072
-
Adaptation of Escherichia coli O157:H7 topHaltersmembrane lipid composition, verotoxin secretion, and resistance to simulated gastric fluid acid
-
YukHG, Marshall DL. 2004. Adaptation of Escherichia coli O157:H7 topHaltersmembrane lipid composition, verotoxin secretion, and resistance to simulated gastric fluid acid. Appl. Environ.Microbiol. 70:3500-5
-
(2004)
Appl. Environ.Microbiol.
, vol.70
, pp. 3500-3505
-
-
Yuk, H.G.1
Marshall, D.L.2
-
94
-
-
77950604350
-
Acid stress response in enteropathogenic gammaproteobacteria: An aptitude for survival
-
Zhao B, Houry WA. 2010. Acid stress response in enteropathogenic gammaproteobacteria: an aptitude for survival. Biochem. Cell Biol. 88:301-14
-
(2010)
Biochem. Cell Biol.
, vol.88
, pp. 301-314
-
-
Zhao, B.1
Houry, W.A.2
-
95
-
-
0037008743
-
Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding protein of Escherichia coli
-
Zhao G, Ceci P, Ilari A, Giangiacomo L, Laue TM, et al. 2002. Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding protein of Escherichia coli. J. Biol. Chem. 277:27689-96
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 27689-27696
-
-
Zhao, G.1
Ceci, P.2
Ilari, A.3
Giangiacomo, L.4
Laue, T.M.5
-
96
-
-
79957625386
-
Protonation of glutamate-208 induces the release of agmatine in an outwardfacing conformation of arginine/agmatine antiporter
-
Zomot E, Bahar I. 2011. Protonation of glutamate-208 induces the release of agmatine in an outwardfacing conformation of arginine/agmatine antiporter. J. Biol. Chem. 286:19693-701
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 19693-19701
-
-
Zomot, E.1
Bahar, I.2
|