Analysis of expressed sequence tags from a normalized cDNA library of perilla (Perilla frutescens)

Journal of Plant Biology

Volumn 57, Issue 5, 2014, Pages 312-320

  Lee, Sang Choon ^a   Lee, Junki ^a   Kim, Nam Hoon ^a   Park, Jee Young ^a   Kim, Hyun Uk ^b   Lee, Hyun Oh ^a   Choi, Beom Soon ^c   Kim, Kyunghee ^a,c   Lee, Jonghoon ^a   Lee, Myoung Hee ^b   Senthil, Kalaiselvi ^d   Jiang, Xu ^e   Sun, Chao ^e   Kim, Tae Ho ^b   Yang, Tae Jin ^a  

^a Seoul National University   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c Phyzen Inc   (South Korea)

^d AVINASHILINGAM INSTITUTE FOR HOME SCIENCE AND HIGHER EDUCATION FOR WOMEN   (India)

^e INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

Author keywords

cDNA library; Expressed sequence tag; Fatty acid desaturase; Perilla

Indexed keywords

EID: 84919880301     PISSN: 12269239     EISSN: 18670725     Source Type: Journal    
DOI: 10.1007/s12374-014-0263-2     Document Type: Article

References (48)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
2. Asif M (2011) Health effects of omega-3,6,9 fatty acids: Perilla frutescens is a good example of plant oils. Orient Pharm Exp Med 11:51–59
3. Bedigian D, Seigler DS, Harlan JR (1985) Sesamin, sesamolin and the origin of sesame. Biochem Syst Ecol 13:133–139
4. Chung CH, Kim JL, Lee YC, Choi YL (1999) Cloning and characterization of a seed-specific omega-3 fatty acid desaturase cDNA from Perilla frutescens. Plant Cell Physiol 40:114–118
5. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674–3676
6. Deng YM, Xie QM, Zhang SJ, Yao HY, Zhang H (2007) Antiasthmatic effects of perilla seed oil in the guinea pig in vitro and in vivo. Planta Med 73:53–58.
7. Diao Y, Miao Y, Lin X, Liao C, Guo F, Hu Z (2009) Comparative analysis of five varieties in Perilla frutescens (L.) Britton by 45S rDNA FISH and 5S rDNA sequences. Genetika 45:506–510
8. Feng LJ, Yu CH, Ying KJ, Hua J, Dai XY (2011) Hypolipidemic and antioxidant effects of total flavonoids of Perilla frutescens leaves in hyperlipidenia rat induced by high-fat diet. Food Research International 44:404–409
9. Gwak YH, Kwon JK, Kim SD, Kim HK, Park CB, Bae SB, Bae SD, Oh KO, Yun ES, Lee DC, Lee MH, Jeong CS, Choi YH, Hong YK (2003) Dlggae. Yeongnam Agricultural Research Institute, National Institute of Crop Science (NICS), Rural Development Administration, Republic of Korea
10. Ha TH, Lee JH, Lee MH, Lee BW, Kwon HS, Park CH, Shim KB, Kim HT, Baek IY, Jang DS (2012) Isolation and identification of phenolic compounds from the seeds of Perilla frutescens (L.) and their inhibitory activities against a-glucosidase and aldose reductase. Food Chemistry 135:1317–1403
11. Hwang SK, Hwang YS (2000) Molecular cloning and functional expression of Perilla frutescens 3-ketoacyl-(acyl carrier protein) synthase III. Mol Cells 10:375–381
12. Hwang SK, Kim KH, Hwang YS (2000) Molecular cloning and expression analysis of 3-ketoacyl-ACP synthases in the immature seeds of Perilla frutescens. Mol Cells 10:533–539
13. Ichihara K, Suda Y (2003) Lipid biosynthesis in developing perilla seeds. Phytochemistry 63:139–143
14. Igarashi M, Miyazaki Y (2013) A review on bioactivities of perilla: progress in research on the functions of perilla as medicine and food. Evidence-based complementary and alternative medicine. 2013:Article ID 925342http://dx.doi.org/10.1155/2013/925342
15. Jun HI, Kim BT, Song GS, Kim YS (2014) Structural characterization of phenolic antioxidants from purple perilla (Perilla frutescens var. acuta) leaves. Food Chemistry 148:367–372
16. Kang R, Helms R, Stout MJ, Jaber H, Chen Z, Nakatsu T (1992) Antimicrobial activity of the volatile constituents of Perilla frutescens and its sysnergistic effects with polygodial. J Agric Food Chem 40:2326–2330
17. Ke T, Dong C, Mao H, Zhao Y, Chen H, Liu H, Dong X, Tong C, Liu S. (2011) Analysis of expression sequence tags from a fulllength- enriched cDNA library of developing sesame seeds (Sesamum indicum). BMC Plant Biol 11:180
18. Kitada C, Gong Z, Tanaka Y, Yamazaki M, Saito K (2001) Differential expression of two cytochrome P450s involved in the biosynthesis of flavones and anthocyanins in chemo-varietal forms of Perilla frutescens. Plant Cell Physiol 42:1338–1344
19. Lee JK, Nitta M, Kim NS, Park CH, Yoon KM, Shin YB, Ohnishi O (2002) Genetic diversity of perilla and related weedy types in Korea determined by AFLP analyses. Crop Sci 42:2161–2166
20. Lee JK, Ohnishi O (2001) Geographic differentiation of morphological characters among perilla crops and their weedy types in East Asia. Breed Sci 51:247–255
21. Lee JK, Ohnishi O (2003) Genetic relationships among cultivated types of Perilla frutescens and their weedy types in East Asia revealed by AFLP markers. Genet Resour Crop Evol 50:65–74
22. Li-Beisson Y, Shorrosh B, Beisson F, Andersson MX, Arondel V, Bates PD, Baud S, Bird D, Debono A, Durrett TP, Franke RB, Graham IA, Katayama K, Kelly AA, Larson T, Markham JE, Miquel M, Molina I, Nishida I, Rowland O, Samuels L, Schmid KM, Wada H, Welti R, Xu C, Zallot R, Ohlrogge J (2013) Acyllipid metabolism. Arabidopsis Book. 11:e0161
23. Lin ES, Chou HJ, Kuo PL, Huang YC (2010) Antioxidant and antiproliferative activities of methanolic extracts of Perilla frutescens. Journal of Medicinal Plants Research 46:477–483
24. Los DM, Murata N (1998) Structure and expression of fatty acid desaturases. Biochim Biophys Acta 1394:3–15
25. Makino T (1961) Makino’s new illustrated flora of Japan. Hokuryukan, Tokyo (in Japanese)
26. Makino T, Furuta Y, Wakushima H, Fujii H, Saito K, Kano Y (2003) Anti-allergic effect of Perilla frutescens its active constituent. Phytother Res 17:240–243
27. Mau CJ, Karp F, Ito M, Honda G, Croteau RB (2010) A candidate cDNA clone for (-)-limonene-7-hydroxylase from Perilla frutescens. Phytochemistry 71:373–379
28. Meng L, Loazno YF, Gaydou EM, Li B (2009) Antioxidant activities of polyphenols extracted from Perilla frutescens varieties. Molecules 14:133–140
29. Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS (2009) PESTAS: a web server for EST analysis and sequence mining. Bioinformatics 25:1846–1848
30. Nitta M (2001) Origin of Perilla crops and their weedy type. Ph.D. Thesis, Kyoto University, Kyoto
31. Nitta M, Ohnishi O (1999) Genetic relationships among two Perilla crops, shiso and egoma, and the weedy type revealed by RAPD markers. Jpn J Genet 74:43–48
32. Oh JH, Sohn HY, Kim JM, Kim YS, Kim NS (2004) Construction of multi-purpose vectors, pCNS and pCNS-D2, are suitable for collection and functional study of large-scale cDNAs. Plasmid 51:217–226
33. Ohlrogge J, Browse J (1995) Lipid biosynthesis. Plant Cell 7:957–970
34. Onogi N, Okuno M, Komaki C, Moriwaki H, Kawamori T, Tanaka T, Mori H, Muto T (1996) Suppressing effect of perilla oil on azoxymethane-induced foci of colonic aberrant crypts in rats. Carcinogenesis 17:1291–1296
35. Rudd S (2003) Expressed sequence tags: alternative or complement to whole genome sequences? Trends Plant Sci 8:321–329
36. Sadi AM, Toda T, Oku H, Hokama S (1996) Dietary effects of corn oil, oleic acid, Perilla oil, and primrose oil on plasma and hepatic lipid level and atherosclerosis in Japanese quail. Exp Anim 45:55–62
37. Saita E, Kishimoto Y, Tani M, Iizuka M, Toyozaki M, Sugihara N, Kondo K (2012) Antioxidant activities of Perilla frutescens against low-density lipoprotein oxidation in vitro and inhuman subjects. J Oleo Sci 61:113–120
38. Seo PJ, Lee SB, Suh MC, Park MJ, Go YS, Park CM (2011). The MYB96 transcription factor regulates cuticular wax biosynthesis under drought conditions in Arabidopsis. Plant Cell 23:1138–1152
39. Sompornpailin K, Makita Y, Yamazaki M, Saito K (2002) A WDrepeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol Biol 50:485–495
40. Upchurch RG (2008) Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress. Biotechnol Lett 30:967–977
41. Varshney RK, Nayak SN, May GD, Jackson SA (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol 27:522–530
42. Yamazaki M, Saito K (2006) Isolation and characterization of anthocyanin 5-O-glucosyltransferase in Perilla frutescens var. crispa by differential display. Methods Mol Biol 317:255–266
43. Yamazaki M, Saito K (2011) Molecular genetic study on the anthocyanin chemotypes of Perilla frutescens var. crispa. Nat Prod Commun 6:423–427
44. Yamazaki M, Yamagishi E, Gong Z, Fukuchi-Mizutani M, Fukui Y, Tanaka Y, Kusumi T, Yamaguchi M, Saito K (2002) Two flavonoid glucosyltransferases from Petunia hybrida: molecular cloning, biochemical properties and developmentally regulated expression. Plant Mol Biol4 8:401–411
45. Yonekura-Sakakibara K, Tanaka Y, Fukuchi-Mizutani M, Fujiwara H, Fukui Y, Ashikari T, Murakami Y, Yamaguchi M, Kusumi T (2000) Molecular and biochemical characterization of a novel hydroxycinnamoyl-CoA: anthocyanin 3-O-glucoside-6′-Oacyltransferase from Perilla frutescens. Plant Cell Physiol 41:495–502
46. Yu HC, Kosuna K, Haga M (2004) Perilla: The Genus Perilla. Taylor & Francis 11 New Fetter Lane, London
47. Wang L, Yu S, Tong C, Zhao Y, Liu Y, Song C, Zhang Y, Zhang X, Wang Y, Hua W, Li D, Li D, Li F, Yu J, Xu C, Han X, Huang S, Tai S, Wang J, Xu X, Li Y, Liu S, Varshney RK, Wang J, Zhang X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biol 15:R39
48. Zhang T, Li L, Hu F, Zhao X, Fu B, Yang D (2012) Analysis of ESTs from a normalized cDNA library of the rhizome tip of Oryza longistaminata. J Plant Biol 55:33–42