Molecular basis of a shattering resistance boosting global dissemination of soybean

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 50, 2014, Pages 17797-17802

  Funatsuki, Hideyuki ^a,b   Suzuki, Masaya ^c   Hirose, Aya ^a   Inaba, Hiroki ^c   Yamada, Tetsuya ^d   Hajika, Makita ^d   Komatsu, Kunihiko ^a   Katayama, Takeshi ^e   Sayama, Takashi ^a,f   Ishimoto, Masao ^a,f   Fujino, Kaien ^c  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

^b Department of Planning and General Administration NARO Western Region Agricultural Research Center ^*  (Japan)

^c HOKKAIDO UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^e KAGAWA UNIVERSITY   (Japan)

^f NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Crop improvement; Dirigent protein; Map based cloning; Pod dehiscence; QTL

Indexed keywords

LIGNIN; PDH1 PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; FORCE; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE MAPPING; GENOTYPE; GERMPLASM; HUMIDITY; INBREEDING; LANDRACE; MOLECULAR CLONING; NEAR ISOGENIC LINE; NONHUMAN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PDH1 GENE; PLANT GENE; POD; POD DEHISCENCE; QUANTITATIVE TRAIT LOCUS; SEED DISPERSAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOYBEAN; BIOLOGY; BREEDING; DNA SEQUENCE; FRUIT; GENETICS; IN SITU HYBRIDIZATION; MOLECULAR GENETICS; MUTATION; PHYLOGENY; PHYSIOLOGY; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

GLYCINE MAX;

BASE SEQUENCE; BREEDING; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; FRUIT; GENES, PLANT; IN SITU HYBRIDIZATION; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEED DISPERSAL; SEQUENCE ANALYSIS, DNA; SOYBEANS;

EID: 84919343756     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1417282111     Document Type: Article

References (56)

1. Hayashi M, Feilich KL, Ellerby DJ (2009) The mechanics of explosive seed dispersal in orange jewelweed (Impatiens capensis). J Exp Bot 60(7):2045-2053.
2. Deegan RD (2012) Finessing the fracture energy barrier in ballistic seed dispersal. Proc Natl Acad Sci USA 109(14):5166-5169.
3. Vaughn KC, Bowling AJ, Ruel KJ (2011) The mechanism for explosive seed dispersal in Cardamine hirsuta (Brassicaceae). Am J Bot 98(8):1276-1285.
4. Fuller DQ (2007) Contrasting patterns in crop domestication and domestication rates: Recent archaeobotanical insights from the Old World. Ann Bot (Lond) 100(5):903-924.
5. Ogawa M, Kay P, Wilson S, Swain SM (2009) ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1(ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis. Plant Cell 21(1):216-233.
6. Ferrándiz C, Liljegren SJ, Yanofsky MF (2000) Negative regulation of the SHATTERPROOF genes by FRUITFULL during Arabidopsis fruit development. Science 289(5478):436-438.
7. Liljegren SJ, et al. (2000) SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis. Nature 404(6779):766-770.
8. Rajani S, Sundaresan V (2001) The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence. Curr Biol 11(24):1914-1922.
9. Liljegren SJ, et al. (2004) Control of fruit patterning in Arabidopsis by INDEHISCENT. Cell 116(6):843-853.
10. Mitsuda N, Ohme-Takagi M (2008) NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity. Plant J 56(5):768-778.
11. Liu B, et al. (2007) QTL mapping of domestication-related traits in soybean (Glycine max). Ann Bot (Lond) 100(5):1027-1038.
12. Dong Y, et al. (2014) Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean. Nat Commun 5:3352.
13. Tsuchiya T (1987) Hysiological and genetic-analysis of pod shattering in soybeans. Jarq-Japan Agric Res Q 21(3):166-175.
14. Bailey MA, Mian M A R, Carter TE, Ashley DA, Boerma HR (1997) Pod dehiscence of soybean: Identification of quantitative trait loci. J Hered 88(2):152-154.
15. Funatsuki H, et al. (2006) Simple sequence repeat markers linked to a major QTL controlling pod shattering in soybean. Plant Breed 125(2):195-197.
16. Kang ST, et al. (2009) Population-specific QTLs and their different epistatic interactions for pod dehiscence in soybean. Euphytica 166(1):15-24.
17. Yamada T, et al. (2009) A major QTL, qPDH1, is commonly involved in shattering resistance of soybean cultivars. Breed Sci 59(4):435-440.
18. Suzuki M, Fujino K, Funatsuki H (2009) A major soybean QTL, qPDH1, controls pod dehiscence without marked morphological change. Plant Prod Sci 12(2):217-223.
19. Suzuki M, Fujino K, Nakamoto Y, Ishimoto M, Funatsuki H (2010) Fine mapping and development of DNA markers for the qPDH1 locus associated with pod dehiscence in soybean. Mol Breed 25(3):407-418.
20. Isemura T, et al. (2012) Construction of a genetic linkage map and genetic analysis of domestication related traits in mungbean (Vigna radiata). PLoS ONE 7(8):e41304.
21. Carlson JB, Lersten NR (2004) Reproductive morphology. Soybeans: Improvement, Production, and Uses, Agronomy, eds Boema HR, Specht JE (Am Soc Agron-Crop Sci Soc Am-Soil Sci Soc Am, Madison, WI), No. 16, 3rd Ed, pp 59-95.
22. Cockrell RT (1974) A comparison of latewood pits, fibril orientation, and shrinkage of normal and compression wood of Giant Sequoia. Wood Sci Technol 8:197-206.
23. Gao M, Zhu H (2013) Fine mapping of a major quantitative trait locus that regulates pod shattering in soybean. Mol Breed 32:485-491.
24. Schmutz J, et al. (2010) Genome sequence of the palaeopolyploid soybean. Nature 463(7278):178-183.
25. Mühlemann O, Eberle AB, Stalder L, Zamudio Orozco R (2008) Recognition and elimination of nonsense mRNA. Biochim Biophys Acta 1779(9):538-549.
26. Ralph SG, Jancsik S, Bohlmann J (2007) Dirigent proteins in conifer defense II: Extended gene discovery, phylogeny, and constitutive and stress-induced gene expression in spruce (Picea spp.). Phytochemistry 68(14):1975-1991.
27. Gang DR, et al. (1999) Regiochemical control of monolignol radical coupling: A new paradigm for lignin and lignan biosynthesis. Chem Biol 6(3):143-151.
28. Wang YP, Nowak G, Culley D, Hadwiger LA, Fristensky B (1999) Constitutive expression of pea defense gene DRR206 confers resistance to blackleg (Leptosphaeria maculans) disease in transgenic canola (Brassica napus). Mol Plant Microbe Interact 12:410-418.
29. Burlat V, Kwon M, Davin LB, Lewis NG (2001) Dirigent proteins and dirigent sites in lignifying tissues. Phytochemistry 57(6):883-897.
30. Casu RE, et al. (2004) Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling. Plant Mol Biol 54(4):503-517.
31. Kaga A, et al. (2012) Evaluation of soybean germplasm conserved in NIAS genebank and development of mini core collections. Breed Sci 61(5):566-592.
32. Hyten DL, et al. (2006) Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci USA 103(45):16666-16671.
33. TE C, et al. (2004) Genetic diversity in soybean. Soybeans: Improvement, Production, and Uses, Agronomy, eds Boema HR, Specht JE (Am Soc Agron-Crop Sci Soc Am-Soil Sci Soc Am, Madison, WI), No. 16, 3rd Ed, pp 303-416.
34. Davin LB, et al. (1997) Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center. Science 275(5298):362-366.
35. Liu J, Stipanovic RD, Bell AA, Puckhaber LS, Magill CW (2008) Stereoselective coupling of hemigossypol to form (+)-gossypol in moco cotton is mediated by a dirigent protein. Phytochemistry 69(18):3038-3042.
36. Pickel B, et al. (2010) An enantiocomplementary dirigent protein for the enantioselective laccase-catalyzed oxidative coupling of phenols. Angew Chem Int Ed Engl 49(1):202-204.
37. Kim KW, et al. (2012) Opposite stereoselectivities of dirigent proteins in Arabidopsis and Schizandra species. J Biol Chem 287(41):33957-33972.
38. Ralph S, Park JY, Bohlmann J, Mansfield SD (2006) Dirigent proteins in conifer defense: Gene discovery, phylogeny, and differential wound- and insect-induced expression of a family of DIR and DIR-like genes in spruce (Picea spp.). Plant Mol Biol 60(1):21-40.
39. Shi H, et al. (2012) Overexpression of cotton (Gossypium hirsutum) dirigent1 gene enhances lignification that blocks the spread of Verticillium dahliae. Acta Biochim Biophys Sin (Shanghai) 44(7):555-564.
40. Hosmani PS, et al. (2013) Dirigent domain-containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root. Proc Natl Acad Sci USA 110(35):14498-14503.
41. Davin LB, Lewis NG (2005) Lignin primary structures and dirigent sites. Curr Opin Biotechnol 16(4):407-415.
42. Baxter I, et al. (2009) Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. PLoS Genet 5(5):e1000492.
43. Hymowitz T, Kaizuma N (1979) Dissemination of soybeans (Glycine max): Seed protein electrophoresis profiles among Japanese cultivars. Econ Bot 33(3):311-319.
44. Funatsuki H, et al. (2012) Mapping and use of QTLs controlling pod dehiscence in soybean. Breed Sci 61(5):554-558.
45. Hymowitz T (1970) On the domestication of the soybean. Econ Bot 24(4):408-421.
46. Caviness CE (1965) Effects of relative humidity on pod dehiscence in soybeans. Crop Sci 5(6):511-513.
47. Wysmierski PT, Vello NA (2013) The genetic base of Brazilian soybean cultivars: Evolution over time and breeding implications. Genet Mol Biol 36(4):547-555.
48. Yamada T, et al. (2013) Production of soybean new line by back-crossing method and DNA marker assisted selection for shattering resistance and maturity loci. Bull NARO Inst Crop Sci 14:13-22.
49. Bennett EJ, Roberts JA, Wagstaff C (2011) The role of the pod in seed development: Strategies for manipulating yield. New Phytol 190(4):838-853.
50. Østergaard L, Kempin SA, Bies D, Klee HJ, Yanofsky MF (2006) Pod shatter-resistant Brassica fruit produced by ectopic expression of the FRUITFULL gene. Plant Biotechnol J 4(1):45-51.
51. Girin T, et al. (2010) Brassicaceae INDEHISCENT genes specify valve margin cell fate and repress replum formation. Plant J 63(2):329-338.
52. Chiapparino E, Lee D, Donini P (2004) Genotyping single nucleotide polymorphisms in barley by tetra-primer ARMS-PCR. Genome 47(2):414-420.
53. Nishizawa K, Kita Y, Kitayama M, Ishimoto M (2006) A red fluorescent protein, DsRed2, as a visual reporter for transient expression and stable transformation in soybean. Plant Cell Rep 25(12):1355-1361.
54. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30(12):2725-2729.
55. Wang S, Basten CJ, Zeng Z-B (2012) Windows QTL Cartographer 2.5 (North Carolina State University, Raleigh, NC).
56. Funatsuki H, et al. (2008) Confirmation of the location and the effects of a major QTL controlling pod dehiscence, qPDH1, in soybean. Breed Sci 58(1):63-69.