QTL mapping of domestication-related traits in soybean (Glycine max)

Annals of Botany

Volumn 100, Issue 5, 2007, Pages 1027-1038

  Liu, Baohui ^a   Fujita, Toshiro ^a   Yan, Ze Hong ^b,c   Sakamoto, Shinichi ^a,d   Xu, Donghe ^b   Abe, Jun ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

^c SICHUAN AGRICULTURAL UNIVERSITY   (China)

^d Takano Foods Co Ltd   (Japan)

Author keywords

Domestication related traits; Glycine max; Hard seededness; Pod dehiscence; QTL; Seed size; Soybean; Twinning habit

Indexed keywords

CROP YIELD; DOMESTICATION; INTROGRESSION; MAPPING; RELATEDNESS; SEED SIZE; SOYBEAN; STRESS RESISTANCE; TWINNING; WILD POPULATION;

AGRICULTURE; ARTICLE; CHROMOSOME MAP; FRUIT; GENETIC MARKER; GENETICS; HISTOLOGY; PHENOTYPE; PHYSIOLOGY; PLANT SEED; QUANTITATIVE TRAIT LOCUS; SOYBEAN;

AGRICULTURE; CHROMOSOME MAPPING; FRUIT; GENETIC MARKERS; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEEDS; SOYBEANS;

GLYCINE MAX; SOJA;

EID: 35348957912     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcm149     Document Type: Article

References (64)

1. Abe J, Ohara M, Shimamoto Y. 1992. New electrophoretic mobility variants observed in wild soybean (Glycine soja) distributed in Japan and Korea. Soybean Genetics Newsletter 19: 63-72.
2. Abe J, Hasegawa A, Fukushi H, Mikami T, Ohara M, Shimamoto Y. 1999. Introgression between wild and cultivated soybeans of Japan revealed by RFLP analysis of chloroplast DNAs. Economic Botany 53: 285-291.
3. Bailey MA, Mian MAR, Carter TE Jr, Ashley DA, Boerma HR. 1997. Pod dehiscence of soybean: identification of quantitative trait loci. Journal of Heredity 88: 152-154.
4. Box GEP, Cox DR. 1964. An analysis of transformations. Journal of the Royal Statistics Society, Series B 26: 211-243.
5. Broich S, Palmer RG. 1980. A cluster analysis of wild and domesticated soybean phenotypes. Euphytica 29: 23-32.
6. Broich S, Palmer RG. 1981. Evolutionary studies of the soybean: the frequency and distribution of alleles among collections of Glycine max and soja of various origin. Euphytica 30: 55-64.
7. Burke JM, Tang S, Knapp SJ, Rieseberg LH. 2002. Genetic analysis of sunflower domestication. Genetics 161: 1257-1267.
8. Cai HW, Morishima H. 2002. QTL clusters reflect character associations in wild and cultivated rice. Theoretical and Applied Genetics 104: 1217-1228.
9. Chachalis D, Smith ML. 2000. Imbibition behavior of soybean (Glycine max (L.) Merrill) accessions with different testa characteristics. Seed Science and Technology 28: 321-331.
10. Chen YY, Chen PY, de los Reyes BG. 2006. Differential responses of the cultivated and wild species of soybean to dehydration stress. Crop Science 46: 2041-2046.
11. Churchill GA, Doerge RW. 1994. Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
12. Concibido VC, Vallee BL, Mclaird P, Pineda N, Meyer J, Hummel L, et al. 2003. Introgression of a quantitative trait locus for yield from glycine soja into commercial soybean cultivars. Theoretical and Applied Genetics 106: 575-582.
13. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, et al. 1999. An integrated genetic linkage map of the soybean genome. Crop Science 39: 1464-1490.
14. 2 populations. Genetics 134: 559-570.
15. 2 population: implications for the origin of maize. Proceedings of the National Academy of Sciences, USA 87: 9888-9892.
16. Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD. 2002. Conservation of gene function in the Solanaceae as revealed by comparative mapping of domestication traits in eggplant. Genetics 161: 1713-1726.
17. Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
18. Fasoula VA, Harris DK, Boerma HR. 2004. Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Science 44: 1218-1225.
19. Fehr WR, Caviness CE, Burmood DT, Pennington JS. 1971. Stage of development descriptions for soybeans, Glycine max (L.) Merrill. Crop Science 11: 929-931.
20. Fukuda T, Maruyama N, Kanazawa A, Abe J, Shimamoto Y, Hiemori M, et al. 2005. Molecular analysis and physicochemical properties of electrophoretic variants of wild soybean Glycine soja storage proteins. Journal of Agricultural and Food Chemistry 53: 3658-3665.
21. Funatsuki H, Ishimoto M, Tsuji H, Kawaguchi K, Hajika M, Fujino K. 2006. Simple sequence repeat markers linked to a major QTL controlling pod shattering in soybean. Plant Breeding 125: 195-197.
22. Gottlieb LD. 1984. Genetics and morphological evolution in plants. American Naturalist 123: 681-709.
23. Grandillo S, Tanksley SD. 1996. QTL analysis of horticultural traits differentiating the cultivated tomato from the closely related species Lycopersicon pimpinellifolium. Theoretical and Applied Genetics 92: 935-951.
24. Harlan JR. 1992. Crops and man, 2nd edn. Madison, WI: American Society of Agronomy, Inc. and Crop Science Society of America, Inc.
25. Hymowitz T. 2004. Speciation and cytogenetics. In Boerma HR, JE Specht eds. Soybeans: improvement, production, and uses, 3rd edn. Madison, WI: American Society of Agronomy, Inc. Crop Science Society of America, Inc. and Soil Science Society of America, Inc., 97-136.
26. Hyten DL, Pantalone VR, Sams CE, Saxton AM, Landau-Ellis D, Stefaniak TR, Schmidt ME. 2004. Seed quality QTL in a prominent soybean population. Theoretical and Applied Genetics 109: 552-561.
27. Kanamaru K, Wang SD, Abe J, Yamada T, Kitamura K. 2006. Identification and characterization of wild soybean (Glycine soja Sieb. et Zucc.) strains with high lutein content. Breeding Science 56: 231-234.
28. Keim P, Diers BW, Olson TC, Shoemaker RC. 1990a. RFLP mapping in soybean: association between maker loci and variation in quantitative traits. Genetics 126: 735-742.
29. Keim P, Diers BW, Shoemaker RC. 1990b. Genetic analysis of soybean hard seededness with molecular markers. Theoretical and Applied Genetics 79: 465-469.
30. Koinange EMK, Singh SP, Gepts P. 1996. Genetic control of the domestication syndrome in common bean. Crop Science 36: 1037-1045.
31. Lande R. 1983. The response to selection on major and minor mutations affecting a metrical trait. Heredity 50: 47-65.
32. Lauter N, Doebley J. 2002. Genetic variation for phenotypically invariant traits detected in teosinte: implications for the evolution of novel forms. Genetics 160: 333-342.
33. Luo QY, Yu GJ, Liu YL. 2005. Differential sensitivity to chloride and sodium ions in seedlings of Glycine max and G. soja under NaCl stress. Journal of Plant Physiology 162: 1003-1012.
34. Maughan PJ, Saghai Maroof MA, Buss GR. 1996. Molecular-marker analysis of seed-weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species. Theoretical and Applied Genetics 93: 574-579.
35. Molnar SJ, Rai S, Charette M, Cober ER. 2003. Simple sequence repeat (SSR) markers linked to E1, E3, E4 and E7 maturity genes in soybean. Genome 46: 1024-1036.
36. Mullin WJ, Xu W. 2001. Study of soybean seed coat components and their relationship to water absorption. Journal of Agricultural Food Chemistry 49: 5331-5335.
37. Ohashi H. 1982. Glycine max (L.) Merr. subsp. soja (Sieb and Zucc.) Ohashi, comb. nov. (In Japanese.) Journal of Japanese Botany 57: 30.
38. Oka HI. 1988. Origins of cultivated rice. Tokyo and Amsterdam: Japan Scientific Societies Press and Elsevier Science Publishers.
39. Palmer RG, Sun H, Zhao LM. 2000. Genetics and cytology of chromosome inversions in soybean germplasm. Crop Science 40: 683-687.
40. Palmer RG, Newhouse KE, Graybosch RA, Delannay X. 1987. Chromosome structure of the wild soybean. Journal of Heredity 78: 243-247.
41. Paterson A, Lin Y, Li Z, Schertz K, Doebley J, Pinson S, et al. 1995. Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1718.
42. Peng J, Ronin Y, Fahima T, Roder MS, Li Y, Nevo E, Korol A. 2003. Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proceedings of the National Academy of Sciences, USA 100: 2489-2494.
43. Poncet V, Lamy F, Devos KM, Gale MD, Sarr A, Robert T. 2000. Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae). Theoretical and Applied Genetics 100: 147-159.
44. Poncet V, Martel E, Allouis S, Devos KM, Lamy F, Sarr A, Robert T. 2002. Comparative analysis of QTLs affecting domestication traits between two domesticated x wild pearl millet (Pennisetum glaucum L., Poaceae) crosses. Theoretical and Applied Genetics 104: 965-975.
45. Ross-Ibarra J. 2005. Quantitative trait loci and the study of plant domestication. Genetica 123: 197-204.
46. Sakamoto S, Abe J, Kanazawa A, Shimamoto Y. 2004. Marker-assisted analysis for soybean hard seededness with isozyme and simple sequence repeat loci. Breeding Science 54: 133-139.
47. Saxe LA, Clark C, Lin SF, Lumpkin TA. 1996. Mapping the pod-shattering trait in soybean. Soybean Genetics Newsletter 23: 250-253.
48. Sebolt AM, Shoemaker RC, Diers BW. 2000. Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Science 40: 1438-1444.
49. Shimamoto Y, Fukushi H, Abe J, Kanazawa A, Gai JY, Gao Z, Xu DH. 1998. RFLPs of chloroplast and mitochondrial DNA in wild soybean, Glycine soja, growing in China. Genetic Resources and Crop Evolution 45: 433-439.
50. Shimamoto Y, Abe J, Gao Z, Gai JY, Thseng FS. 2000. Characterizing the cytoplasmic diversity and phyletic relationship of Chinese landraces of soybean, Glycine max, based on RFLPs of chloroplast and mitochondrial DNA. Genetic Resources and Crop Evolution 47: 611-617.
51. Singh RJ, Hymowitz T. 1988. The genomic relationship between Glycine max (L.) Merr. and G soja Sieb. and Zucc. as revealed by pachytene chromosome analysis. Theoretical and Applied Genetics 76: 705-711.
52. Sokal RR, Rohlf FJ. 1981. Biometry, 2nd edn. WH Freeman and Company, San Francisco.
53. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB. 2004. A new integrated genetic linkage map of the soybean. Theoretical and Applied Genetics 109: 122-128.
54. Thseng FS, Hosokawa S. 1972. Significance of growth habit in soybean breeding. I. Varietal differences in characteristics of growth habit. Japanese Journal of Breeding 22: 261-268.
55. Van Ooijen JW. 2004. MapQTL 5, Software for the mapping of quantitative trait loci in experimental populations. Wageningen: Kyazma, BV.
56. Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, Hornes M, et al. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
57. Wang D, Arelli PR, Shoemaker RC, Diers BW. 2001. Loci underlying resistance to race 3 of soybean cyst nematode in Glycine soja plant introduction 468916. Theoretical and Applied Genetics 103: 561-566.
58. Wang D, Graef GL, Procopiuk AM, Diers BW. 2004. Identification of putative QTL that underlie yield in interspecific soybean backcross populations Theoretical and Applied Genetics 108: 458-467.
59. Watanabe S, Tajuddin T, Yamanaka N, Hayashi M, Harada K. 2004. Analysis of QTLs for reproductive development and seed quality traits in soybean using recombinant inbred lines. Breeding Science 54: 399-407.
60. 2 population of a cross between Oryza sativa and O. rufipogon. Theoretical and Applied Genetics 98: 243-251.
61. Xu DH, Abe J, Gai JY, Shimamoto Y. 2003. Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: evidence for multiple origins of cultivated soybean. Theoretical and Applied Genetics 105: 645-653.
62. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Molecular and General Genetics 253: 535-545.
63. Yamanaka N, Ninomiya S, Hoshi M, Tsubokura Y, Yano M, Nagamura Y, Sasaki T, Harada K. 2001. An informative linkage map of soybean reveals QTLs for flowering time, leaf morphology and region of segregation distortion. DNA Research 8: 61-72.
64. Zhang WK, Wang YJ, Luo GZ, Zhang JS, He CY, Wu XL, Gai JY, Chen SY. 2004. QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theoretical and Applied Genetics 108: 1131-1139.