Construction of a genetic linkage map and genetic analysis of domestication related traits in Mungbean (Vigna radiata)

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Isemura, Takehisa ^a   Kaga, Akito ^a   Tabata, Satoshi ^b   Somta, Prakit ^c   Srinives, Peerasak ^c   Shimizu, Takehiko ^d   Jo, Uken ^a   Vaughan, Duncan A ^a   Tomooka, Norihiko ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

^c KASETSART UNIVERSITY   (Thailand)

^d Research Division 1 for Plants   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PLANT DNA;

ARTICLE; CONTROLLED STUDY; CULTIVATED SPECIES; DOMESTICATION; EXPRESSED SEQUENCE TAG; GENE FUNCTION; GENE IDENTIFICATION; GENE LINKAGE GROUP; GENE MUTATION; GENETIC ANALYSIS; GENETIC DIFFERENCE; GENETIC LINKAGE; GENETIC MARKER; GENETIC RESOURCE; GENETIC TRAIT; HAPLOIDY; MUNG BEAN; NONHUMAN; NUCLEOTIDE SEQUENCE; POD; QUANTITATIVE TRAIT LOCUS MAPPING; SEED DORMANCY; SEED SIZE; SEED WEIGHT; SIMPLE SEQUENCE REPEAT; SPECIES DIFFERENCE; WILD SPECIES;

CHROMOSOME MAPPING; CROSSES, GENETIC; EXPRESSED SEQUENCE TAGS; FABACEAE; GENETIC LINKAGE; MICROSATELLITE REPEATS; PHENOTYPE; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; SEEDS;

VIGNA; VIGNA RADIATA;

EID: 84864489918     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0041304     Document Type: Article

References (58)

1. Tomooka N, Vaughan DA, Moss H, Maxted N, ((2002)) The Asian Vigna: Genus Vigna subgenus Ceratotropis genetic resources. Dordrecht: Kluwer Academic Publishers. 270 p.
2. Lambrides CJ, Godwin ID (2007) Mungbean. In: Kole C, editor. Genome mapping and molecular breeding in plants, Volume 3: Pulses, sugar and tuber crops. Heidelberg: Springer Verlag. 69-90.
3. Pandiyan M, Senthil N, Ramamoorthi N, Ganesh SK, ((2011)) Present status and future perspectives of Glycine and Vigna in India. In: Tomooka N, Vaughan DA, editors. The 14th NIAS international workshop on genetic resources - Genetic resources and comparative genomics of legumes (Glycine and Vigna). Tsukuba: National Institute of Agrobiological Science. pp. 53--60.
4. Hidayat U, Khalil IH, Hidayat-Ur-Rahman, Muhammad F, Khalil IA, et al. ((2011)) Environmental influence on heritability and selection response of morpho-physiological traits in mungbean. Pak J Bot 43:: 301--310.
5. Srinives P, Somta P, ((2011)) Present status and future perspectives of Glycine and Vigna in Thailand. In: Tomooka N, Vaughan DA, editors. The 14th NIAS international workshop on genetic resources - Genetic resources and comparative genomics of legumes (Glycine and Vigna). Tsukuba: National Institute of Agrobiological Science. pp. 63--68.
6. Cheng Z, Tian J, ((2011)) Status and future perspectives of Vigna (mungbean and azuki bean) production and research in China. In: Tomooka N, Vaughan DA, editors. The 14th NIAS international workshop on genetic resources - Genetic resources and comparative genomics of legumes (Glycine and Vigna). Tsukuba: National Institute of Agrobiological Science. pp. 83--86.
7. Somta P, Sommanas W, Srinives P, ((2009)) Molecular diversity assessment of AVRDC-The World Vegetable Center elite-parental mungbeans. Breed Sci 59:: 149--157.
8. Fatokun CA, Menancio-Hautea DI, Dariush D, Young ND, ((1992)) Evidence for orthologous seed weight genes in cowpea and mung bean based on RFLP mapping. Genetics 132:: 841--846.
9. Menancio-Hautea D, Fatokun CA, Kumar L, Danesh D, Young ND, ((1993)) Comparative genome analysis of mungbean (Vigna radiata L. Wilczek) and cowpea (V. unguiculata L. Walpers) using RFLP mapping data. Theor Appl Genet 86:: 797--810.
10. Menancio-Hautea D, Kumar L, Danesh D, Young ND, ((1993)) A genome map for mungbean [Vigna radiata (L.) Wilczek] based on DNA genetic markers (2n = 2x = 22). In: O'Brien JS, editor. Genetic maps 1992. A compilation of linkage and restriction maps of genetically studied organisms. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp. 6.259--6.261.
11. Lambrides CJ, Lawn RJ, Godwin ID, Manners J, Imrie BC, ((2000)) Two genetic linkage maps of mungbean using RFLP and RAPD markers. Aust J Agric Res 51:: 415--425.
12. Humphry ME, Konduri V, Lambrides CJ, Magner T, McIntyre CL, et al. ((2002)) Development of a mungbean (Vigna radiata) RFLP linkage map and its comparison with lablab (Lablab purpureus) reveals a high level of colinearity between the two genomes. Theor Appl Genet 105:: 160--166.
13. Humphry ME, Magner T, McIntyre CL, Aitken EAB, Liu CJ, ((2003)) Identification of a major locus conferring resistance to powdery mildew (Erysiphe polygoni DC) in mungbean (Vigna radiata L. Wilczek) by QTL analysis. Genome 46:: 738--744.
14. Humphry ME, Lambrides CJ, Chapman SC, Aitken EAB, Imrie BC, et al. ((2005)) Relationships between hard-seededness and seed weight in mungbean (Vigna radiata) assessed by QTL analysis. Plant Breed 124:: 292--298.
15. Chankaew S, Somta P, Sorajjapinun W, Srinives P, ((2011)) Quantitative trait loci mapping of Cercospora leaf spot resistance in mungbean, Vigna radiata (L) Wilczek. Mol Breeding 28:: 255--264.
16. Young ND, Kumar L, Menancio-Hautea D, Danesh D, Talekar NS, et al. ((1992)) RFLP mapping of a major bruchid resistance gene in mungbean (Vigna radiata L., Wilczek). Theor Appl Genet 84:: 839--844.
17. Kaga A, Ishimoto M, ((1998)) Genetic localization of a bruchid resistance gene and its relationship to insecticidal cyclopeptide alkaloids, the vignatic acids, in mungbean (Vigna radiata L. Wilczek). Mol Gen Genet 258:: 378--384.
18. Mei L, Cheng XZ, Wang SH, Wang LX, Liu CY, et al. ((2009)) Relationship between bruchid resistance and seed mass in mungbean based on QTL analysis. Genome 52:: 589--596.
19. Lambrides CJ, Godwin ID, Lawn RJ, Imrie BC, ((2004)) Segregation distortion for seed testa color in mungbean (Vigna radiata L. Wilczek). J Hered 95:: 532--535.
20. Young ND, Danesh D, Menancio-Hautea D, Kumar L, ((1993)) Mapping oligogenic resistance to powdery mildew in mungbean with RFLPs. Theor Appl Genet 87:: 243--249.
21. Chaitieng B, Kaga A, Han OK, Wang XW, Wongkaew S, et al. ((2002)) Mapping a new source of resistance to powdery mildew in mungbean. Plant Breed 121:: 521--525.
22. Kasettranan W, Somta P, Srinives P, ((2010)) Mapping of quantitative trait loci controlling powdery mildew resistance in mungbean (Vigna radiate (L.) Wilczek). J Crop Sci Biotech 13:: 155--161.
23. Isemura T, Kaga A, Konishi S, Ando T, Tomooka N, et al. ((2007)) Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and their comparison with other warm season legumes. Ann Bot 100:: 1053--1071.
24. Kaga A, Isemura T, Tomooka N, Vaughan DA, ((2008)) The genetics of domestication of azuki bean (Vigna angularis). Genetics 178:: 1013--1036.
25. Isemura T, Kaga A, Tomooka N, Shimizu T, Vaughan DA, ((2010)) Construction of a genetic linkage map and genetic analysis of the domestication related traits in rice bean (Vigna umbellata). Ann Bot 106:: 927--944.
26. Saravanakumar P, Kaga A, Tomooka N, Vaughan DA, ((2004)) AFLP and RAPD analyses of intra-and interspecific variation in some Vigna subgenus Ceratotropis (Leguminosae) species. Aust J Bot 52:: 417--424.
27. Fuller DQ, Harvey EL, ((2006)) The archaeobotany of Indian pulses: identification, processing and evidence for cultivation. Environmental Archaeology 11:: 219--246.
28. Sangiri C, Kaga A, Tomooka N, Vaughan D, Srinives P, ((2007)) Genetic diversity of the mungbean (Vigna radiata, Leguminosae) genepool on the basis of microsatellite analysis Genetic diversity of the mungbean (Vigna radiata, Leguminosae) genepool on the basis of microsatellite analysis. Aust J Bot 55:: 837--847.
29. Wang XW, Kaga A, Tomooka N, Vaughan DA, ((2004)) The development of SSR markers by a new method in plants and their application to gene flow studies in azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi]. Theor Appl Genet 109:: 352--360.
30. Chen JJ, Chen GH, Hsu HC, Li SS, Chen CS, ((2004)) Cloning and functional expression of a mungbean defensin VrD1 in Pichia pastoris. J Agric Food Chem 52:: 2256--2261.
31. Miyagi M, Humphry M, Ma ZY, Lambrides CJ, Bateson M, et al. ((2004)) Construction of bacterial artificial chromosome libraries and their application in developing PCR-based markers closely linked to a major locus conditioning bruchid resistance in mungbean (Vigna radiata L. Wilczek). Theor Appl Genet 110:: 151--156.
32. Somta P, Musch W, Kongsamai B, Chanprame S, Nakasatien S, et al. ((2008)) New microsatellite markers isolated from mungbean (Vigna radiata (L.) Wilczek). Mol Ecol Resour 8:: 1155--1157.
33. Somta P, Seehalak W, Srinives P, ((2009)) Development, characterization and cross-species amplification of mungbean (Vigna radiata) genic microsatellite markers. Conserv Genet 10:: 1939--1943.
34. Li CD, Fatokun CA, Ubi B, Singh BB, Scoles GJ, ((2001)) Determining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers. Crop Sci 41:: 189--197.
35. Blair MW, Pedraza F, Buendia HF, Gaitán-Solís E, Beebe SE, et al. ((2003)) Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor Appl Genet 107:: 1362--1374.
36. Gaitán-Solís E, Duque MC, Edwards KJ, Tohme J, ((2002)) Microsatellite repeats in common bean (Phaseolus vulgaris): isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci 42:: 2128--2136.
37. Guerra-Sanz JM, ((2004)) New SSR markers of Phaseolus vulgaris from sequence databases. Plant Breed 123:: 87--89.
38. Yu K, Park SJ, Poysa V, Gepts P, ((2000)) Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J Hered 91:: 429--434.
39. Fukuoka H, Nunome T, Minamiyama Y, Kono I, Namiki N, et al. ((2005)) Read2Marker: a data processing tool for microsatellite marker development from a large data set. BioTechniques 39:: 472--476.
40. Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP, ((2007)) CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences. BMC Bioinformatics 8: 129. Available: http://www.biomedcentral.com/1471-2105/8/129. Accessed 2012 Apr 27.
41. Han OK, Kaga A, Isemura T, Wang XW, Tomooka N, et al. ((2005)) A genetic linkage map for azuki bean [Vigna angularis (Willd.) Ohwi & Ohashi]. Theor Appl Genet 111:: 1278--1287.
42. Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, et al. ((2007)) Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res 14:: 271--281.
43. Sato S, Isobe S, Asamizu E, Ohmido N, Kataoka R, et al. ((2005)) Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.). DNA Res 12:: 301--364.44.
44. Van Ooijien JW, ((2006)) Join Map 4.0, Software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands: Kyazma B. V.
45. Kosambi DD, ((1944)) The estimation of map distances from recombination values. Ann Eugen 12:: 172--175.
46. Kitamura K, Ishimoto M, Sawa M, ((1988)) Inheritance of resistance to infestation with azuki bean weevil in Vigna sublobata and successful incorporation to V. radiata. Japan J Breed 38:: 459--464.
47. Koinange EMK, Singh SP, Gepts P, ((1996)) Genetic control of the domestication syndrome in common bean. Crop Sci 36:: 1037--1045.
48. Liu B, Fujita T, Yan ZH, Sakamoto S, Xu D, et al. ((2007)) QTL mapping of domestication-related traits in soybean (Glycine max). Ann Bot 100:: 1027--1038.
49. Weeden NF, ((2007)) Genetic changes accompanying the domestication of Pisum sativa: is there a common genetic basis to the 'domestication syndrome' for legumes? Ann Bot 100:: 1017--1025.
50. Doebley J, Stec A, Gustus C, ((1995)) Teosinte branched 1 and the origin of maize: evidence for epistasis and the evolution of dominance. Genetics 141:: 333--346.
51. Xiong LZ, Liu KD, Dai XK, Xu CG, Zhang Q, ((1999)) Identification of genetic factors controlling domestication-related traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon. Theor Appl Genet 98:: 243--251.
52. Poncet V, Lamy F, Devos KM, Gale MD, Sarr A, et al. ((2000)) Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae). Theor Appl Genet 100:: 147--159.
53. Gopinathan MC, Babu CR, ((1985)) Structural diversity and its adaptive significance in seeds of Vigna minima (Roxb.) Ohwi & Ohashi and allies (Leguminosae-Papilionoideae). Ann Bot 56:: 723--732.
54. Kikuchi K, Koizumi M, Ishida N, Kano H, ((2006)) Water uptake by dry beans observed by micro-magnetic resonance imaging. Ann Bot 98:: 545--553.
55. Fernandez GCJ, Shanmugasundaram S, ((1988)) The AVRDC mungbean improvement program: the past present and future. In: Shanmugasundaram S, McClean BT, editors; Tainan, Taiwan. Taiwan: Asian Vegetable Research and Development Center. pp. 58--70.
56. James AT, Lawn RJ, Williams RW, Lambrides CJ, ((1999)) Cross fertility of Australian accessions of wild mungbean (Vigna radiata ssp. sublobata) with green gram (V. radiata ssp. radiata) and black gram (V. mungo). Aust J Bot 47:: 601--610.
57. Kaga A, Ohnishi M, Ishii T, Kamijima O, ((1996)) A genetic linkage map of azuki bean constructed with molecular and morphological markers using an interspecific population (Vigna angularis x V. nakashimae). Theor Appl Gent 93:: 658--663.
58. Hwang T-Y, Sayama T, Takahashi M, Takeda Y, Nakamoto Y, et al. ((2009)) High-density integrated linkage map based on SSR markers in Soybean. DNA Res 16:: 213--225.