메뉴 건너뛰기




Volumn 41, Issue 11, 2014, Pages 7217-7222

Utility of indels for species-level identification of a biologically complex plant group: a study with intergenic spacer in Citrus

Author keywords

Citrus; DNA barcoding; Indel; Inverted repeat; Primer design; trnH psbA

Indexed keywords

CHLOROPLAST DNA; PRIMER DNA; SPACER DNA;

EID: 84917733061     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3606-7     Document Type: Article
Times cited : (26)

References (24)
  • 1
    • 84872476978 scopus 로고    scopus 로고
    • The species dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): Dna barcoding in clarifying the riddle
    • PID: 23341979, COI: 1:CAS:528:DC%2BC3sXhsFyhtr4%3D
    • Laskar BA, Bhattacharjee MJ, Dhar B, Mahadani P, Kundu S, Ghosh SK (2013) The species dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA barcoding in clarifying the riddle. PLoS ONE 8(1):e53704
    • (2013) PLoS ONE , vol.8 , Issue.1 , pp. e53704
    • Laskar, B.A.1    Bhattacharjee, M.J.2    Dhar, B.3    Mahadani, P.4    Kundu, S.5    Ghosh, S.K.6
  • 6
    • 67650114617 scopus 로고    scopus 로고
    • DNA barcoding will frequently fail in complicated groups: An example in wild potatoes
    • PID: 21628268, COI: 1:CAS:528:DC%2BD1MXotFOlsLs%3D
    • Spooner DM (2009) DNA barcoding will frequently fail in complicated groups: an example in wild potatoes. Am J Bot 96(6):1177–1189
    • (2009) Am J Bot , vol.96 , Issue.6 , pp. 1177-1189
    • Spooner, D.M.1
  • 7
    • 0345668476 scopus 로고    scopus 로고
    • Majority of divergence between closely related DNA samples is due to indels
    • PID: 12672966, COI: 1:CAS:528:DC%2BD3sXjt12ns78%3D
    • Britten RJ, Rowen L, Williams J, Cameron RA (2003) Majority of divergence between closely related DNA samples is due to indels. Proc Natl Acad Sci U S A 100(8):4661–4665
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.8 , pp. 4661-4665
    • Britten, R.J.1    Rowen, L.2    Williams, J.3    Cameron, R.A.4
  • 8
  • 9
    • 0027561833 scopus 로고
    • Evolution of a noncoding region of the chloroplast genome
    • COI: 1:CAS:528:DyaK2cXhsF2js7s%3D
    • Golenberg EM, Clegg MT, Durbin ML, Doebley J, Ma DP (1993) Evolution of a noncoding region of the chloroplast genome. Mol Phy Evol 2(1):52–64
    • (1993) Mol Phy Evol , vol.2 , Issue.1 , pp. 52-64
    • Golenberg, E.M.1    Clegg, M.T.2    Durbin, M.L.3    Doebley, J.4    Ma, D.P.5
  • 10
    • 0242582442 scopus 로고    scopus 로고
    • Molecular evolution of insertions and deletion in the chloroplast genome of silene
    • COI: 1:CAS:528:DC%2BD3sXpt1Kgsb4%3D
    • Ingvarsson PK, Ribstein S, Taylor DR (2003) Molecular evolution of insertions and deletion in the chloroplast genome of silene. Mol Bio Evol 20(11):1737–1740
    • (2003) Mol Bio Evol , vol.20 , Issue.11 , pp. 1737-1740
    • Ingvarsson, P.K.1    Ribstein, S.2    Taylor, D.R.3
  • 11
    • 78650445809 scopus 로고    scopus 로고
    • Recent trends in molecular phylogenetic analysis: Where to next?
    • PID: 20696667
    • Blair C, Murphy RW (2011) Recent trends in molecular phylogenetic analysis: where to next? J Hered 102(1):130–138
    • (2011) J Hered , vol.102 , Issue.1 , pp. 130-138
    • Blair, C.1    Murphy, R.W.2
  • 12
    • 0037423543 scopus 로고    scopus 로고
    • Biological identifications through DNA barcodes
    • PID: 12614582, COI: 1:CAS:528:DC%2BD3sXktVWiu7g%3D
    • Hebert PD, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proc Biol Sci 270(1512):313–321
    • (2003) Proc Biol Sci , vol.270 , Issue.1512 , pp. 313-321
    • Hebert, P.D.1    Cywinska, A.2    Ball, S.L.3    deWaard, J.R.4
  • 13
    • 84864348841 scopus 로고    scopus 로고
    • Sampling strategy and potential utility of indels for DNA barcoding of closely related plant species: A case study in Taxus
    • PID: 22942731, COI: 1:CAS:528:DC%2BC38XhtV2mtr%2FM
    • Liu J, Provan J, Gao L, Li D (2012) Sampling strategy and potential utility of indels for DNA barcoding of closely related plant species: a case study in Taxus. Int J Mol Sci 13(7):8740–8751
    • (2012) Int J Mol Sci , vol.13 , Issue.7 , pp. 8740-8751
    • Liu, J.1    Provan, J.2    Gao, L.3    Li, D.4
  • 14
    • 63449086638 scopus 로고    scopus 로고
    • A molecular phylogeny of the orange subfamily (Rutaceae: Aurantioideae) using nine cpDNA sequences
    • PID: 21628223, COI: 1:CAS:528:DC%2BD1MXktlGntrc%3D
    • Bayer RJ, Mabberley DJ, Morton C, Miller CH, Sharma IK, Pfeil BE, Rich S, Hitchcock R, Sykes S (2009) A molecular phylogeny of the orange subfamily (Rutaceae: Aurantioideae) using nine cpDNA sequences. Am J Bot 96(3):668–685
    • (2009) Am J Bot , vol.96 , Issue.3 , pp. 668-685
    • Bayer, R.J.1    Mabberley, D.J.2    Morton, C.3    Miller, C.H.4    Sharma, I.K.5    Pfeil, B.E.6    Rich, S.7    Hitchcock, R.8    Sykes, S.9
  • 15
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 16
    • 65349159232 scopus 로고    scopus 로고
    • DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India
    • Ragupathy S, Newmaster SG, Murugesan M, Balasubramaniam V (2009) DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India. Mol Ecol Resour 9(Suppl s1):164-171
    • (2009) Mol Ecol Resour , vol.9 , pp. 164-171
    • Ragupathy, S.1    Newmaster, S.G.2    Murugesan, M.3    Balasubramaniam, V.4
  • 17
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • PID: 12118412, COI: 1:STN:280:DC%2BD38zntlKjtg%3D%3D
    • Simmons MP, Ochoterena H (2000) Gaps as characters in sequence-based phylogenetic analyses. Syst Biol 49(2):369–381
    • (2000) Syst Biol , vol.49 , Issue.2 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 19
    • 58249102270 scopus 로고    scopus 로고
    • Molecular phylogeny in IndianCitrus L. (Rutaceae) inferred through PCR-RFLP and trnL-trnF sequence data of chloroplast DNA
    • COI: 1:CAS:528:DC%2BD1MXhtFektbk%3D
    • Jena SN, Kumar S, Nair NK (2009) Molecular phylogeny in IndianCitrus L. (Rutaceae) inferred through PCR-RFLP and trnL-trnF sequence data of chloroplast DNA. Sci Hortic 119(4):403–416
    • (2009) Sci Hortic , vol.119 , Issue.4 , pp. 403-416
    • Jena, S.N.1    Kumar, S.2    Nair, N.K.3
  • 20
    • 42449162907 scopus 로고    scopus 로고
    • The architecture of the chloroplast psbA-trnH non coding region in angiosperms
    • Strochova H, Olson MS (2007) The architecture of the chloroplast psbA-trnH non coding region in angiosperms. Plant Syst Evol 268:235–256
    • (2007) Plant Syst Evol , vol.268 , pp. 235-256
    • Strochova, H.1    Olson, M.S.2
  • 21
    • 84879645924 scopus 로고    scopus 로고
    • Identification of ethnomedicinal plants (Rauvolfioideae: Apocynaceae) through DNA barcoding from northeast India
    • PID: 23930011, COI: 1:CAS:528:DC%2BC2cXot12kug%3D%3D
    • Mahadani P, Sharma GD, Ghosh SK (2013) Identification of ethnomedicinal plants (Rauvolfioideae: Apocynaceae) through DNA barcoding from northeast India. Pharmacogn Mag 9(35):255–263
    • (2013) Pharmacogn Mag , vol.9 , Issue.35 , pp. 255-263
    • Mahadani, P.1    Sharma, G.D.2    Ghosh, S.K.3
  • 22
    • 84871728961 scopus 로고    scopus 로고
    • A nuclear phylogenetic analysis: Snps, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species
    • PID: 23104641, COI: 1:CAS:528:DC%2BC38XhvFShsr3E
    • Garcia-Lor A, Curk F, Snoussi-Trifa H, Morillon R, Ancillo G, Luro F, Navarro L, Ollitrault P (2013) A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species. Ann Bot 111(1):1–19
    • (2013) Ann Bot , vol.111 , Issue.1 , pp. 1-19
    • Garcia-Lor, A.1    Curk, F.2    Snoussi-Trifa, H.3    Morillon, R.4    Ancillo, G.5    Luro, F.6    Navarro, L.7    Ollitrault, P.8
  • 23
    • 84857029435 scopus 로고    scopus 로고
    • Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: A perspective for genetic association studies
    • PID: 22160318, COI: 1:CAS:528:DC%2BC38Xmtl2l
    • Garcia-Lor A, Luro F, Navarro L, Ollitrault P (2012) Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies. Mol Genet Genomics 287(1):77–94
    • (2012) Mol Genet Genomics , vol.287 , Issue.1 , pp. 77-94
    • Garcia-Lor, A.1    Luro, F.2    Navarro, L.3    Ollitrault, P.4
  • 24
    • 3342931347 scopus 로고    scopus 로고
    • Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae
    • PID: 12832633, COI: 1:CAS:528:DC%2BD3sXotlWjsL8%3D
    • Hamilton MB, Braverman JM, Soria-Hernanz DF (2003) Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae. Mol Biol Evol 20(10):1710–1721
    • (2003) Mol Biol Evol , vol.20 , Issue.10 , pp. 1710-1721
    • Hamilton, M.B.1    Braverman, J.M.2    Soria-Hernanz, D.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.