메뉴 건너뛰기




Volumn 5, Issue OCT, 2014, Pages

How does evolution tune biological noise?

Author keywords

Bet hedging; Evolution; Nucleosome; Phenotypic buffering; Stochasticity

Indexed keywords

BIOLOGICAL NOISE; ENZYME ACTIVITY; GENE EXPRESSION; GENE MUTATION; GENE TRANSLOCATION; GENETIC REGULATION; GENOTYPE; GENOTYPE PHENOTYPE CORRELATION; HUMAN; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOSOME; PHENOTYPE; PHENOTYPIC VARIATION; REVIEW; TRANSCRIPTION INITIATION;

EID: 84917698552     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2014.00374     Document Type: Review
Times cited : (32)

References (80)
  • 1
    • 43249103636 scopus 로고    scopus 로고
    • Cell-to-cell stochastic variation in gene expression is a complex genetic trait
    • Ansel, J., Bottin, H., Rodriguez-Beltran, C., Damon, C., Nagarajan, M., Fehrmann, S.,et al. (2008). Cell-to-cell stochastic variation in gene expression is a complex genetic trait. PLoS Genet. 4:e1000049. doi: 10.1371/journal.pgen.1000049
    • (2008) PLoS Genet , vol.4
    • Ansel, J.1    Bottin, H.2    Rodriguez-Beltran, C.3    Damon, C.4    Nagarajan, M.5    Fehrmann, S.6
  • 2
    • 84880940410 scopus 로고    scopus 로고
    • Mapping differentiation under mixed culture conditions reveals a tunable continuum of T cell fates
    • Antebi, Y. E., Reich-Zeliger, S., Hart, Y., Mayo, A., Eizenberg, I., Rimer, J.,et al. (2013). Mapping differentiation under mixed culture conditions reveals a tunable continuum of T cell fates. PLoS Biol. 11:e1001616. doi: 10.1371/journal.pbio.1001616
    • (2013) PLoS Biol , vol.11
    • Antebi, Y.E.1    Reich-Zeliger, S.2    Hart, Y.3    Mayo, A.4    Eizenberg, I.5    Rimer, J.6
  • 3
    • 33745532801 scopus 로고    scopus 로고
    • Increased cell-to-cell variation in gene expression in ageing mouse heart
    • Bahar, R., Hartmann, C. H., Rodriguez, K. A., Denny, A. D., Busuttil, R. A., Dollé, M. E. T.,et al. (2006). Increased cell-to-cell variation in gene expression in ageing mouse heart. Nature 441, 1011-1014. doi: 10.1038/nature04844
    • (2006) Nature , vol.441 , pp. 1011-1014
    • Bahar, R.1    Hartmann, C.H.2    Rodriguez, K.A.3    Denny, A.D.4    Busuttil, R.A.5    Dollé, M.E.T.6
  • 4
    • 77951902484 scopus 로고    scopus 로고
    • Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle
    • Bai, L., Charvin, G., Siggia, E. D., and Cross, F. R. (2010). Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle. Dev. Cell 18, 544-555. doi: 10.1016/j.devcel.2010.02.007
    • (2010) Dev. Cell , vol.18 , pp. 544-555
    • Bai, L.1    Charvin, G.2    Siggia, E.D.3    Cross, F.R.4
  • 5
    • 4644343922 scopus 로고    scopus 로고
    • Bacterial persistence as a phenotypic switch
    • Balaban, N. Q., Merrin, J., Chait, R., Kowalik, L., and Leibler, S. (2004). Bacterial persistence as a phenotypic switch. Science 305, 1622-1625. doi: 10.1126/science.1099390
    • (2004) Science , vol.305 , pp. 1622-1625
    • Balaban, N.Q.1    Merrin, J.2    Chait, R.3    Kowalik, L.4    Leibler, S.5
  • 6
    • 33745287724 scopus 로고    scopus 로고
    • Noise in protein expression scales with natural protein abundance
    • Bar-Even, A., Paulsson, J., Maheshri, N., Carmi, M., O'Shea, E., Pilpel, Y.,et al. (2006). Noise in protein expression scales with natural protein abundance. Nat. Genet. 38, 636-643. doi: 10.1038/ng1807
    • (2006) Nat. Genet. , vol.38 , pp. 636-643
    • Bar-Even, A.1    Paulsson, J.2    Maheshri, N.3    Carmi, M.4    O'Shea, E.5    Pilpel, Y.6
  • 7
    • 0034688220 scopus 로고    scopus 로고
    • Circadian clocks limited by noise
    • Barkai, N., and Leibler, S. (2000). Circadian clocks limited by noise. Nature 403, 267-268. doi: 10.1038/35002258
    • (2000) Nature , vol.403 , pp. 267-268
    • Barkai, N.1    Leibler, S.2
  • 8
    • 34547519199 scopus 로고    scopus 로고
    • Evolution of chromosome organization driven by selection for reduced gene expression noise
    • Batada, N. N., and Hurst, L. D. (2007). Evolution of chromosome organization driven by selection for reduced gene expression noise. Nat. Genet. 39, 945-949. doi: 10.1038/ng2071
    • (2007) Nat. Genet. , vol.39 , pp. 945-949
    • Batada, N.N.1    Hurst, L.D.2
  • 10
    • 25144450143 scopus 로고    scopus 로고
    • Contributions of low molecule number and chromosomal positioning to stochastic gene expression
    • Becskei, A., Kaufmann, B. B., and van Oudenaarden, A. (2005). Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat. Genet. 37, 937-944. doi: 10.1038/ng1616
    • (2005) Nat. Genet. , vol.37 , pp. 937-944
    • Becskei, A.1    Kaufmann, B.B.2    van Oudenaarden, A.3
  • 11
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation
    • Becskei, A., and Serrano, L. (2000). Engineering stability in gene networks by autoregulation. Nature 405, 590-593. doi: 10.1038/35014651
    • (2000) Nature , vol.405 , pp. 590-593
    • Becskei, A.1    Serrano, L.2
  • 12
    • 33845616177 scopus 로고    scopus 로고
    • Phenotypic consequences of promoter-mediated transcriptional noise
    • Blake, W. J., Balázsi, G., Kohanski, M. A., Isaacs, F. J., Murphy, K. F., Kuang, Y.,et al. (2006). Phenotypic consequences of promoter-mediated transcriptional noise. Mol. Cell 24, 853-865. doi: 10.1016/j.molcel.2006.11.003
    • (2006) Mol. Cell , vol.24 , pp. 853-865
    • Blake, W.J.1    Balázsi, G.2    Kohanski, M.A.3    Isaacs, F.J.4    Murphy, K.F.5    Kuang, Y.6
  • 13
    • 84870575235 scopus 로고    scopus 로고
    • Histone H2A variants in nucleosomes and chromatin: more or less stable?
    • Bönisch, C., and Hake, S. B. (2012). Histone H2A variants in nucleosomes and chromatin: more or less stable? Nucleic Acids Res. 40, 10719-10741. doi: 10.1093/nar/gks865
    • (2012) Nucleic Acids Res , vol.40 , pp. 10719-10741
    • Bönisch, C.1    Hake, S.B.2
  • 14
    • 55349132403 scopus 로고    scopus 로고
    • Plasticity and errors of a robust developmental system in different environments
    • Braendle, C., and Félix, M. A. (2008). Plasticity and errors of a robust developmental system in different environments. Dev. Cell 15, 714-724. doi: 10.1016/j.devcel.2008.09.011
    • (2008) Dev. Cell , vol.15 , pp. 714-724
    • Braendle, C.1    Félix, M.A.2
  • 15
    • 84866369892 scopus 로고    scopus 로고
    • Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
    • Buganim, Y., Faddah, D. A., Cheng, A. W., Itskovich, E., Markoulaki, S., Ganz, K.,et al. (2012). Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase. Cell 150, 1209-1222. doi: 10.1016/j.cell.2012.08.023.
    • (2012) Cell , vol.150 , pp. 1209-1222
    • Buganim, Y.1    Faddah, D.A.2    Cheng, A.W.3    Itskovich, E.4    Markoulaki, S.5    Ganz, K.6
  • 16
    • 52949098296 scopus 로고    scopus 로고
    • Frequency-modulated nuclear localization bursts coordinate gene regulation
    • Cai, L., Dalal, C. K., and Elowitz, M. B. (2008). Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 455, 485-490. doi: 10.1038/nature07292
    • (2008) Nature , vol.455 , pp. 485-490
    • Cai, L.1    Dalal, C.K.2    Elowitz, M.B.3
  • 17
    • 84876991257 scopus 로고    scopus 로고
    • Promoter sequence determines the relationship between expression level and noise
    • Carey, L. B., van Dijk, D., Sloot, P. M. A., Kaandorp, J. A., and Segal, E. (2013). Promoter sequence determines the relationship between expression level and noise. PLoS Biol. 11:e1001528. doi: 10.1371/journal.pbio.1001528
    • (2013) PLoS Biol , vol.11
    • Carey, L.B.1    van Dijk, D.2    Sloot, P.M.A.3    Kaandorp, J.A.4    Segal, E.5
  • 18
    • 82755182886 scopus 로고    scopus 로고
    • Artificial selection reveals heritable variation for developmental instability
    • Carter, A. J. R., and Houle, D. (2011). Artificial selection reveals heritable variation for developmental instability. Evolution 65, 3558-3564. doi: 10.1111/j.1558-5646.2011.01393.x
    • (2011) Evolution , vol.65 , pp. 3558-3564
    • Carter, A.J.R.1    Houle, D.2
  • 19
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • Chang, H. H., Hemberg, M., Barahona, M., Ingber, D. E., and Huang, S. (2008). Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453, 544-547. doi: 10.1038/nature06965
    • (2008) Nature , vol.453 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 20
    • 0034039686 scopus 로고    scopus 로고
    • Seed germination in desert annuals: an empirical test of adaptive bet hedging
    • Clauss, M., and Venable, D. (2000). Seed germination in desert annuals: an empirical test of adaptive bet hedging. Am. Nat. 155, 168-186. doi: 10.1086/ 303314
    • (2000) Am. Nat. , vol.155 , pp. 168-186
    • Clauss, M.1    Venable, D.2
  • 21
    • 84868122260 scopus 로고    scopus 로고
    • Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
    • Coleman-Derr, D., and Zilberman, D. (2012). Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. PLoS Genet. 8:e1002988. doi: 10.1371/journal.pgen.1002988
    • (2012) PLoS Genet , vol.8
    • Coleman-Derr, D.1    Zilberman, D.2
  • 22
    • 84902665600 scopus 로고    scopus 로고
    • Screening for noise in gene expression identifies drug synergies
    • Dar, R. D., Hosmane, N. N., Arkin, M. R., Siliciano, R. F., and Weinberger, L. S. (2014). Screening for noise in gene expression identifies drug synergies. Science 344, 1392-1396. doi: 10.1126/science.1250220
    • (2014) Science , vol.344 , pp. 1392-1396
    • Dar, R.D.1    Hosmane, N.N.2    Arkin, M.R.3    Siliciano, R.F.4    Weinberger, L.S.5
  • 23
    • 77954746410 scopus 로고    scopus 로고
    • Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog
    • Dessaud, E., Ribes, V., Balaskas, N., Yang, L. L., Pierani, A., Kicheva, A.,et al. (2010). Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog. PLoS Biol. 8:e1000382. doi: 10.1371/journal.pbio.1000382
    • (2010) PLoS Biol , vol.8
    • Dessaud, E.1    Ribes, V.2    Balaskas, N.3    Yang, L.L.4    Pierani, A.5    Kicheva, A.6
  • 24
    • 33746396416 scopus 로고    scopus 로고
    • "Wnt signaling,"
    • WormBook, ed., Wormbook
    • Eisenmann, D. M. (2005). "Wnt signaling," in WormBook, ed. The C. elegans Research Community, Wormbook, 1-17. doi: 10.1895/wormbook.1.7.1
    • (2005) The C. elegans Research Community , pp. 1-17
    • Eisenmann, D.M.1
  • 25
    • 67749117790 scopus 로고    scopus 로고
    • Partial penetrance facilitates developmental evolution in bacteria
    • Eldar, A., Chary, V. K., Xenopoulos, P., Fontes, M. E., Loson, O. C., Dworkin, J.,et al. (2009). Partial penetrance facilitates developmental evolution in bacteria. Nature 460, 510-514. doi: 10.1038/nature08150
    • (2009) Nature , vol.460 , pp. 510-514
    • Eldar, A.1    Chary, V.K.2    Xenopoulos, P.3    Fontes, M.E.4    Loson, O.C.5    Dworkin, J.6
  • 26
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz, M. B., Levine, A. J., Siggia, E. D., and Swain, P. S. (2002). Stochastic gene expression in a single cell. Science 297, 1183-1186. doi: 10.1126/science.1070919
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 27
    • 84893011273 scopus 로고    scopus 로고
    • Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability
    • Fehrmann, S., Bottin-Duplus, H., Leonidou, A., Mollereau, E., Barthelaix, A., Wei, W.,et al. (2013). Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability. Mol. Syst. Biol. 9, 695. doi: 10.1038/msb.2013.53
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 695
    • Fehrmann, S.1    Bottin-Duplus, H.2    Leonidou, A.3    Mollereau, E.4    Barthelaix, A.5    Wei, W.6
  • 28
    • 33846223791 scopus 로고    scopus 로고
    • Cryptic quantitative evolution of the vulva intercellular signaling network in Caenorhabditis
    • Félix, M. A. (2007). Cryptic quantitative evolution of the vulva intercellular signaling network in Caenorhabditis. Curr. Biol. 17, 103-114. doi: 10.1016/j.cub.2006.12.024
    • (2007) Curr. Biol. , vol.17 , pp. 103-114
    • Félix, M.A.1
  • 29
    • 38549096995 scopus 로고    scopus 로고
    • Robustness and evolution: concepts, insights and challenges from a developmental model system
    • Félix, M. A., and Wagner, A. (2008). Robustness and evolution: concepts, insights and challenges from a developmental model system. Heredity 100, 132-140. doi: 10.1038/sj.hdy.6800915
    • (2008) Heredity , vol.100 , pp. 132-140
    • Félix, M.A.1    Wagner, A.2
  • 30
    • 79959543603 scopus 로고    scopus 로고
    • Non-adaptive origins of interactome complexity
    • Fernández, A., and Lynch, M. (2011). Non-adaptive origins of interactome complexity. Nature 474, 502-505. doi: 10.1038/nature09992
    • (2011) Nature , vol.474 , pp. 502-505
    • Fernández, A.1    Lynch, M.2
  • 31
    • 84892367295 scopus 로고    scopus 로고
    • The effects of genetic variation on gene expression dynamics during development
    • Francesconi, M., and Lehner, B. (2014). The effects of genetic variation on gene expression dynamics during development. Nature 505, 208-211. doi: 10.1038/nature12772
    • (2014) Nature , vol.505 , pp. 208-211
    • Francesconi, M.1    Lehner, B.2
  • 32
    • 16644373292 scopus 로고    scopus 로고
    • Noise minimization in eukaryotic gene expression
    • Fraser, H. B., Hirsh, A. E., Giaever, G., Kumm, J., and Eisen, M. B. (2004). Noise minimization in eukaryotic gene expression. PLoS Biol. 2:e137. doi: 10.1371/journal.pbio.0020137
    • (2004) PLoS Biol , vol.2
    • Fraser, H.B.1    Hirsh, A.E.2    Giaever, G.3    Kumm, J.4    Eisen, M.B.5
  • 34
    • 73349098753 scopus 로고    scopus 로고
    • The euchromatic and heterochromatic landscapes are shaped by antagonizing effects of transcription on H2A.Z deposition
    • Hardy, S., Jacques, P. É., Gévry, N., Forest, A., Fortin, M. È., Laflamme, L.,et al. (2009). The euchromatic and heterochromatic landscapes are shaped by antagonizing effects of transcription on H2A.Z deposition. PLoS Genet. 5:e1000687. doi: 10.1371/journal.pgen.1000687
    • (2009) PLoS Genet , vol.5
    • Hardy, S.1    Jacques, P.É.2    Gévry, N.3    Forest, A.4    Fortin, M.È.5    Laflamme, L.6
  • 36
    • 84871819437 scopus 로고    scopus 로고
    • Genetic variants contribute to gene expression variability in humans
    • Hulse, A. M., and Cai, J. J. (2013). Genetic variants contribute to gene expression variability in humans. Genetics 193, 95-108. doi: 10.1534/genetics.112.146779
    • (2013) Genetics , vol.193 , pp. 95-108
    • Hulse, A.M.1    Cai, J.J.2
  • 37
    • 0034307468 scopus 로고    scopus 로고
    • Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants
    • Jackson, J. D., and Gorovsky, M. A. (2000). Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants. Nucleic Acids Res. 28, 3811-3816. doi: 10.1093/nar/28.19.3811
    • (2000) Nucleic Acids Res , vol.28 , pp. 3811-3816
    • Jackson, J.D.1    Gorovsky, M.A.2
  • 38
    • 80053449076 scopus 로고    scopus 로고
    • Genomic analysis of QTLs and genes altering natural variation in stochastic noise
    • Jimenez-Gomez, J. M., Corwin, J. A., Joseph, B., Maloof, J. N., and Kliebenstein, D. J. (2011). Genomic analysis of QTLs and genes altering natural variation in stochastic noise. PLoS Genet. 7:e1002295. doi: 10.1371/journal.pgen.1002295
    • (2011) PLoS Genet , vol.7
    • Jimenez-Gomez, J.M.1    Corwin, J.A.2    Joseph, B.3    Maloof, J.N.4    Kliebenstein, D.J.5
  • 39
    • 24144463906 scopus 로고    scopus 로고
    • How noise and coupling induce bursting action potentials in pancreatic {beta}-cells
    • Jo, J., Kang, H., Choi, M. Y., and Koh, D. S. (2005). How noise and coupling induce bursting action potentials in pancreatic {beta}-cells. Biophys. J. 89, 1534-1542. doi: 10.1529/biophysj.104.053181
    • (2005) Biophys. J. , vol.89 , pp. 1534-1542
    • Jo, J.1    Kang, H.2    Choi, M.Y.3    Koh, D.S.4
  • 40
    • 84892421821 scopus 로고    scopus 로고
    • Copy-number changes in evolution: rates, fitness effects and adaptive significance
    • Katju, V., and Bergthorsson, U. (2013). Copy-number changes in evolution: rates, fitness effects and adaptive significance. Front. Genet. 4:273. doi: 10.3389/fgene.2013.00273
    • (2013) Front. Genet. , vol.4 , pp. 273
    • Katju, V.1    Bergthorsson, U.2
  • 41
    • 41149119083 scopus 로고    scopus 로고
    • The role of disorder in interaction networks: a structural analysis
    • Kim, P. M., Sboner, A., Xia, Y., and Gerstein, M. (2008). The role of disorder in interaction networks: a structural analysis. Mol. Syst. Biol. 4, 179. doi: 10.1038/msb.2008.16
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 179
    • Kim, P.M.1    Sboner, A.2    Xia, Y.3    Gerstein, M.4
  • 42
    • 28444488937 scopus 로고    scopus 로고
    • C. elegans cell cycles: invariance and stem cell divisions
    • Kipreos, E. T. (2005). C. elegans cell cycles: invariance and stem cell divisions. Nat. Rev. Mol. Cell. Biol. 6, 766-776. doi: 10.1038/nrm1738
    • (2005) Nat. Rev. Mol. Cell. Biol. , vol.6 , pp. 766-776
    • Kipreos, E.T.1
  • 43
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • Kitano, H. (2004). Biological robustness. Nat. Rev. Genet. 5, 826-837. doi: 10.1038/nrg1471
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 826-837
    • Kitano, H.1
  • 44
    • 0029853061 scopus 로고    scopus 로고
    • A chance-selection model for cell differentiation
    • Kupiec, J. J. (1996). A chance-selection model for cell differentiation. Cell Death Differ. 3, 385-390.
    • (1996) Cell Death Differ , vol.3 , pp. 385-390
    • Kupiec, J.J.1
  • 45
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth, and information in fluctuating environments
    • Kussell, E., and Leibler, S. (2005). Phenotypic diversity, population growth, and information in fluctuating environments. Science 309, 2075-2078. doi: 10.1126/science.1114383
    • (2005) Science , vol.309 , pp. 2075-2078
    • Kussell, E.1    Leibler, S.2
  • 46
    • 42949131308 scopus 로고    scopus 로고
    • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    • Lehner, B. (2008). Selection to minimise noise in living systems and its implications for the evolution of gene expression. Mol. Syst. Biol. 4, 170. doi: 10.1038/msb.2008.11
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 170
    • Lehner, B.1
  • 47
    • 78649708844 scopus 로고    scopus 로고
    • Conflict between noise and plasticity in yeast
    • Lehner, B. (2010). Conflict between noise and plasticity in yeast. PLoS Genet. 6:e1001185. doi: 10.1371/journal.pgen.1001185
    • (2010) PLoS Genet , vol.6
    • Lehner, B.1
  • 48
    • 56849091295 scopus 로고    scopus 로고
    • Network hubs buffer environmental variation in Saccharomyces cerevisiae
    • Levy, S. F., and Siegal, M. L. (2008). Network hubs buffer environmental variation in Saccharomyces cerevisiae. PLoS Biol. 6:e264. doi: 10.1371/journal.pbio.0060264
    • (2008) PLoS Biol , vol.6
    • Levy, S.F.1    Siegal, M.L.2
  • 49
    • 84861544417 scopus 로고    scopus 로고
    • Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant
    • Levy, S. F., Ziv, N., and Siegal, M. L. (2012). Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant. PLoS Biol. 10:e1001325. doi: 10.1371/journal.pbio.1001325
    • (2012) PLoS Biol , vol.10
    • Levy, S.F.1    Ziv, N.2    Siegal, M.L.3
  • 50
    • 79959603061 scopus 로고    scopus 로고
    • How a neutral evolutionary ratchet can build cellular complexity
    • Lukeš, J., Archibald, J. M., Keeling, P. J., Doolittle, W. F., and Gray, M. W. (2011). How a neutral evolutionary ratchet can build cellular complexity. IUBMB Life 63, 528-537. doi: 10.1002/iub.489
    • (2011) IUBMB Life , vol.63 , pp. 528-537
    • Lukeš, J.1    Archibald, J.M.2    Keeling, P.J.3    Doolittle, W.F.4    Gray, M.W.5
  • 51
    • 84880659609 scopus 로고    scopus 로고
    • Evolutionary diversification of the multimeric states of proteins
    • Lynch, M. (2013). Evolutionary diversification of the multimeric states of proteins. Proc. Natl. Acad. Sci. U.S.A. 110, E2821-E2828. doi: 10.1073/pnas.1310980110
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. E2821-E2828
    • Lynch, M.1
  • 52
    • 34547925618 scopus 로고    scopus 로고
    • Combinatorial promoter design for engineering noisy gene expression
    • Murphy, K. F., Balázsi, G., and Collins, J. J. (2007). Combinatorial promoter design for engineering noisy gene expression. Proc. Natl. Acad. Sci. U.S.A. 104, 12726-12731. doi: 10.1073/pnas.0608451104
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 12726-12731
    • Murphy, K.F.1    Balázsi, G.2    Collins, J.J.3
  • 53
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • Newman, J. R. S., Ghaemmaghami, S., Ihmels, J., Breslow, D. K., Noble, M., DeRisi, J. L.,et al. (2006). Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441, 840-846. doi: 10.1038/nature04785
    • (2006) Nature , vol.441 , pp. 840L 846
    • Newman, J.R.S.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5    DeRisi, J.L.6
  • 54
    • 73449129423 scopus 로고    scopus 로고
    • Epigenetic and conventional regulation is distributed among activators of FLO11 allowing tuning of population-level heterogeneity in its expression. PLoS Genet
    • Octavio, L. M., Gedeon, K., and Maheshri, N. (2009). Epigenetic and conventional regulation is distributed among activators of FLO11 allowing tuning of population-level heterogeneity in its expression. PLoS Genet. 5:e1000673. doi: 10.1371/journal.pgen.1000673
    • (2009) , vol.5
    • Octavio, L.M.1    Gedeon, K.2    Maheshri, N.3
  • 55
    • 70049101507 scopus 로고    scopus 로고
    • Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo
    • Okabe-Oho, Y., Murakami, H., Oho, S., and Sasai, M. (2009). Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo. PLoS Comput. Biol. 5:e1000486. doi: 10.1371/journal.pcbi.1000486
    • (2009) PLoS Comput. Biol. , vol.5
    • Okabe-Oho, Y.1    Murakami, H.2    Oho, S.3    Sasai, M.4
  • 56
    • 57649139188 scopus 로고    scopus 로고
    • Genetic variation and quantitative trait loci associated with developmental stability and the environmental correlation between traits in maize
    • Ordas, B., Malvar, R., and Hill, W. G. (2008). Genetic variation and quantitative trait loci associated with developmental stability and the environmental correlation between traits in maize. Genet. Res. 90, 385-395. doi: 10.1017/S0016672308009762
    • (2008) Genet. Res. , vol.90 , pp. 385-395
    • Ordas, B.1    Malvar, R.2    Hill, W.G.3
  • 57
    • 0024424452 scopus 로고
    • Epigenetic inheritance of transcriptional states in S. cerevisiae
    • Pillus, L., and Rine, J. (1989). Epigenetic inheritance of transcriptional states in S. cerevisiae. Cell 59, 637-647. doi: 10.1016/0092-8674(89)90009-3
    • (1989) Cell , vol.59 , pp. 637-647
    • Pillus, L.1    Rine, J.2
  • 58
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • Raser, J. M., and O'Shea, E. K. (2004). Control of stochasticity in eukaryotic gene expression. Science 304, 1811-1814. doi: 10.1126/science.1098641
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 59
    • 84884644092 scopus 로고    scopus 로고
    • Histone variant HTZ1 shows extensive epistasis with, but does not increase robustness to, new mutations
    • Richardson, J. B., Uppendahl, L. D., Traficante, M. K., Levy, S. F., and Siegal, M. L. (2013). Histone variant HTZ1 shows extensive epistasis with, but does not increase robustness to, new mutations. PLoS Genet. 9:e1003733. doi: 10.1371/journal.pgen.1003733
    • (2013) PLoS Genet , vol.9
    • Richardson, J.B.1    Uppendahl, L.D.2    Traficante, M.K.3    Levy, S.F.4    Siegal, M.L.5
  • 60
    • 11244289369 scopus 로고    scopus 로고
    • Evidence for genetic control of adult weight plasticity in the snail Helix aspersa
    • Ros, M., Sorensen, D., Waagepetersen, R., Dupont-Nivet, M., SanCristobal, M., Bonnet, J. C.,et al. (2004). Evidence for genetic control of adult weight plasticity in the snail Helix aspersa. Genetics 168, 2089-2097. doi: 10.1534/genetics.104.032672
    • (2004) Genetics , vol.168 , pp. 2089-2097
    • Ros, M.1    Sorensen, D.2    Waagepetersen, R.3    Dupont-Nivet, M.4    SanCristobal, M.5    Bonnet, J.C.6
  • 61
    • 79955432482 scopus 로고    scopus 로고
    • Histone variant H2A.Z and RNA polymerase II transcription elongation
    • Santisteban, M. S., Hang, M., and Smith, M. M. (2011). Histone variant H2A.Z and RNA polymerase II transcription elongation. Mol. Cell. Biol. 31, 1848-1860. doi: 10.1128/MCB.01346-10
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 1848-1860
    • Santisteban, M.S.1    Hang, M.2    Smith, M.M.3
  • 62
    • 66149164596 scopus 로고    scopus 로고
    • Fluctuating natural selection accounts for the evolution of diversification bet hedging
    • Simons, A. M. (2009). Fluctuating natural selection accounts for the evolution of diversification bet hedging. Proc. R. Soc. B Biol. Sci. 276, 1987-1992. doi: 10.1890/06-1495
    • (2009) Proc. R. Soc. B Biol. Sci. , vol.276 , pp. 1987-1992
    • Simons, A.M.1
  • 63
    • 79955386056 scopus 로고    scopus 로고
    • Modes of response to environmental change and the elusive empirical evidence for bet hedging
    • Simons, A. M. (2011). Modes of response to environmental change and the elusive empirical evidence for bet hedging. Proc. Biol. Sci. 278, 1601-1609. doi: 10.1098/rspb.2011.0176
    • (2011) Proc. Biol. Sci. , vol.278 , pp. 1601-1609
    • Simons, A.M.1
  • 64
    • 84857437687 scopus 로고    scopus 로고
    • Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae
    • Stewart-Ornstein, J., Weissman, J. S., and El-Samad, H. (2012). Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae. Mol. Cell 45, 483-493. doi: 10.1016/j.molcel.2011.11.035
    • (2012) Mol. Cell , vol.45 , pp. 483-493
    • Stewart-Ornstein, J.1    Weissman, J.S.2    El-Samad, H.3
  • 65
    • 79955381895 scopus 로고    scopus 로고
    • Mammalian genes are transcribed with widely different bursting kinetics
    • Suter, D. M., Molina, N., Gatfield, D., Schneider, K., Schibler, U., and Naef, F. (2011). Mammalian genes are transcribed with widely different bursting kinetics. Science 332, 472-474. doi: 10.1126/science.1198817
    • (2011) Science , vol.332 , pp. 472-474
    • Suter, D.M.1    Molina, N.2    Gatfield, D.3    Schneider, K.4    Schibler, U.5    Naef, F.6
  • 66
    • 2942555282 scopus 로고    scopus 로고
    • Stochastic gene expression in fluctuating environments
    • Thattai, M., and van Oudenaarden, A. (2004). Stochastic gene expression in fluctuating environments. Genetics 167, 523-530. doi: 10.1534/genetics. 167.1.523
    • (2004) Genetics , vol.167 , pp. 523-530
    • Thattai, M.1    van Oudenaarden, A.2
  • 67
    • 77649220197 scopus 로고    scopus 로고
    • Noise can induce bimodality in positive transcriptional feedback loops without bistability
    • To, T. L., and Maheshri, N. (2010). Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327, 1142-1145. doi: 10.1126/science.1178962
    • (2010) Science , vol.327 , pp. 1142-1145
    • To, T.L.1    Maheshri, N.2
  • 68
    • 77949916296 scopus 로고    scopus 로고
    • Understanding protein non-folding
    • Uversky, V. N., and Dunker, A. K. (2010). Understanding protein non-folding. Biochim. Biophys. Acta 1804, 1231-1264. doi: 10.1016/j.bbapap.2010.01.017
    • (2010) Biochim. Biophys. Acta , vol.1804 , pp. 1231-1264
    • Uversky, V.N.1    Dunker, A.K.2
  • 69
    • 84874149579 scopus 로고    scopus 로고
    • Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts
    • Viñuelas, J., Kaneko, G., Coulon, A., Vallin, E., Morin, V., Mejia-Pous, C.,et al. (2013). Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts. BMC Biol. 11:15. doi: 10.1186/1741-7007-11-15
    • (2013) BMC Biol , vol.11 , pp. 15
    • Viñuelas, J.1    Kaneko, G.2    Coulon, A.3    Vallin, E.4    Morin, V.5    Mejia-Pous, C.6
  • 70
    • 32844454497 scopus 로고    scopus 로고
    • Origins of extrinsic variability in eukaryotic gene expression
    • Volfson, D., Marciniak, J., Blake, W. J., Ostroff, N., Tsimring, L. S., and Hasty, J. (2006). Origins of extrinsic variability in eukaryotic gene expression. Nature 439, 861-864. doi: 10.1038/nature04281
    • (2006) Nature , vol.439 , pp. 861-864
    • Volfson, D.1    Marciniak, J.2    Blake, W.J.3    Ostroff, N.4    Tsimring, L.S.5    Hasty, J.6
  • 71
    • 79955613183 scopus 로고    scopus 로고
    • Impact of gene expression noise on organismal fitness and the efficacy of natural selection
    • Wang, Z., and Zhang, J. (2011). Impact of gene expression noise on organismal fitness and the efficacy of natural selection. Proc. Natl. Acad. Sci. U.S.A. 108, E67-E76. doi: 10.1073/pnas.1100059108
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. E67-E76
    • Wang, Z.1    Zhang, J.2
  • 72
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., and Jones, D. T. (2004). Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol. 337, 635-645. doi: 10.1016/j.jmb.2004. 02.002
    • (2004) J. Mol. Biol. , vol.337 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, L.J.3    Buxton, B.F.4    Jones, D.T.5
  • 73
    • 84896786505 scopus 로고    scopus 로고
    • Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase
    • Weber, C. M., Ramachandran, S., and Henikoff, S. (2014). Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase. Mol. Cell 53, 819-830. doi: 10.1016/j.molcel.2014.02.014
    • (2014) Mol. Cell , vol.53 , pp. 819-830
    • Weber, C.M.1    Ramachandran, S.2    Henikoff, S.3
  • 74
    • 84864312275 scopus 로고    scopus 로고
    • Expression noise and acetylation profiles distinguish HDAC functions
    • Weinberger, L., Voichek, Y., Tirosh, I., Hornung, G., Amit, I., and Barkai, N. (2012). Expression noise and acetylation profiles distinguish HDAC functions. Mol. Cell 47, 193-202. doi: 10.1016/j.molcel.2012.05.008
    • (2012) Mol. Cell , vol.47 , pp. 193-202
    • Weinberger, L.1    Voichek, Y.2    Tirosh, I.3    Hornung, G.4    Amit, I.5    Barkai, N.6
  • 75
    • 33644856456 scopus 로고    scopus 로고
    • Stochastic spineless expression creates the retinal mosaic for colour vision
    • Wernet, M. F., Mazzoni, E. O., Çelik, A., Duncan, D. M., Duncan, I., and Desplan, C. (2006). Stochastic spineless expression creates the retinal mosaic for colour vision. Nature 440, 174-180. doi: 10.1038/ nature04615
    • (2006) Nature , vol.440 , pp. 174-180
    • Wernet, M.F.1    Mazzoni, E.O.2    Çelik, A.3    Duncan, D.M.4    Duncan, I.5    Desplan, C.6
  • 76
    • 33745967090 scopus 로고    scopus 로고
    • Single-cell observations reveal intermediate transcriptional silencing states
    • Xu, E. Y., Zawadzki, K. A., and Broach, J. R. (2006). Single-cell observations reveal intermediate transcriptional silencing states. Mol. Cell 23, 219-229. doi: 10.1016/j.molcel.2006.05.035
    • (2006) Mol. Cell , vol.23 , pp. 219-229
    • Xu, E.Y.1    Zawadzki, K.A.2    Broach, J.R.3
  • 77
    • 84892968392 scopus 로고    scopus 로고
    • "Particle genetics": treating every cell as unique
    • Yvert, G. (2014). "Particle genetics": treating every cell as unique. Trends Genet. 30, 49-56. doi: 10.1016/j.tig.2013.11.002
    • (2014) Trends Genet , vol.30 , pp. 49-56
    • Yvert, G.1
  • 78
    • 84879833353 scopus 로고    scopus 로고
    • Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast
    • Yvert, G., Ohnuki, S., Nogami, S., Imanaga, Y., Fehrmann, S., Schacherer, J.,et al. (2013). Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast. BMC Syst. Biol. 7:54. doi: 10.1186/1752-0509-7-54
    • (2013) BMC Syst. Biol. , vol.7 , pp. 54
    • Yvert, G.1    Ohnuki, S.2    Nogami, S.3    Imanaga, Y.4    Fehrmann, S.5    Schacherer, J.6
  • 79
    • 69249106061 scopus 로고    scopus 로고
    • Positive selection for elevated gene expression noise in yeast
    • Zhang, Z., Qian, W., and Zhang, J. (2009). Positive selection for elevated gene expression noise in yeast. Mol. Syst. Biol. 5, 299. doi: 10.1038/msb.2009.58
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 299
    • Zhang, Z.1    Qian, W.2    Zhang, J.3
  • 80
    • 84890387510 scopus 로고    scopus 로고
    • Genetic and non-genetic determinants of cell-growth variation assessed by high-throughput microscopy
    • Ziv, N., Siegal, M. L., and Gresham, D. (2013). Genetic and non-genetic determinants of cell-growth variation assessed by high-throughput microscopy. Mol. Biol. Evol. 30, 2568-2578. doi: 10.1093/molbev/mst138
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2568-2578
    • Ziv, N.1    Siegal, M.L.2    Gresham, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.