메뉴 건너뛰기




Volumn 30, Issue 12, 2013, Pages 2568-2578

Genetic and nongenetic determinants of cell growth variation assessed by high-throughput microscopy

Author keywords

clonal heterogeneity; glucose deprivation; growth rate; lag duration; natural variation; respiro fermentative growth; Saccharomyces cerevisiae; single cell

Indexed keywords

GLUCOSE;

EID: 84890387510     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst138     Document Type: Article
Times cited : (52)

References (50)
  • 2
    • 79551526832 scopus 로고    scopus 로고
    • Measuring growth rate in high-throughput growth phenotyping
    • Blomberg A. 2011. Measuring growth rate in high-throughput growth phenotyping. Curr Opin Biotechnol. 22:94-102.
    • (2011) Curr Opin Biotechnol. , vol.22 , pp. 94-102
    • Blomberg, A.1
  • 3
    • 75649152860 scopus 로고    scopus 로고
    • Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations
    • Boer VM, Crutchfield CA, Bradley PH, Botstein D, Rabinowitz JD. 2009. Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations. Mol Biol Cell. 21:198-211.
    • (2009) Mol Biol Cell , vol.21 , pp. 198-211
    • Boer, V.M.1    Crutchfield, C.A.2    Bradley, P.H.3    Botstein, D.4    Rabinowitz, J.D.5
  • 4
    • 18244376808 scopus 로고    scopus 로고
    • Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures
    • Brauer MJ, Saldanha AJ, Dolinski K, Botstein D. 2005. Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. Mol Biol Cell. 16:2503-2517.
    • (2005) Mol Biol Cell , vol.16 , pp. 2503-2517
    • Brauer, M.J.1    Saldanha, A.J.2    Dolinski, K.3    Botstein, D.4
  • 6
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
    • Brown CJ, Todd KM, Rosenzweig RF. 1998. Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol. 15:931-942.
    • (1998) Mol Biol Evol , vol.15 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 7
    • 0030745758 scopus 로고    scopus 로고
    • When is simple good enough: A comparison of the Gompertz, Baranyi, and three-phase linear models for fitting bacterial growth curves
    • Buchanan R,Whiting R, Damert W. 1997. When is simple good enough: a comparison of the Gompertz, Baranyi, and three-phase linear models for fitting bacterial growth curves. Food Microbiol. 14: 313-326.
    • (1997) Food Microbiol , vol.14 , pp. 313-326
    • Buchanan, R.1    Whiting, R.2    Damert, W.3
  • 9
    • 77949447610 scopus 로고    scopus 로고
    • Transcriptional regulation of respiration in yeastmetabolizing differently repressive carbon substrates
    • Fendt S-M, Sauer U. 2010. Transcriptional regulation of respiration in yeastmetabolizing differently repressive carbon substrates. BMC Syst Biol. 4:12.
    • (2010) BMC Syst Biol. , vol.4 , pp. 12
    • Fendt, S.-M.1    Sauer, U.2
  • 10
    • 0032735903 scopus 로고    scopus 로고
    • Growth of bacterial cultures"50 years on: Towards an uncertainty principle instead of constants in bacterial growth kinetics
    • Ferenci T. 1999. "Growth of bacterial cultures" 50 years on: towards an uncertainty principle instead of constants in bacterial growth kinetics. Res Microbiol. 150:431-438.
    • (1999) Res Microbiol , vol.150 , pp. 431-438
    • Ferenci, T.1
  • 11
    • 84856021767 scopus 로고    scopus 로고
    • Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states
    • Ferguson ML, Le Coq D, Jules M, Aymerich S, Radulescu O, Declerck N, Royer CA. 2012. Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states. Proc Natl Acad Sci USA. 109:155-160.
    • (2012) Proc Natl Acad Sci USA. , vol.109 , pp. 155-160
    • Ferguson, M.L.1    Le Coq, D.2    Jules, M.3    Aymerich, S.4    Radulescu, O.5    Declerck, N.6    Royer, C.A.7
  • 12
    • 80053994437 scopus 로고    scopus 로고
    • Natural selection. II. Developmental variability and evolutionary rate
    • Frank SA. 2011. Natural selection. II. Developmental variability and evolutionary rate. J Evol Biol. 24:2310-2320.
    • (2011) J Evol Biol. , vol.24 , pp. 2310-2320
    • Frank, S.A.1
  • 13
    • 84859974816 scopus 로고    scopus 로고
    • Nonheritable cellular variability accelerates the evolutionary processes of cancer
    • Frank SA, Rosner MR. 2012. Nonheritable cellular variability accelerates the evolutionary processes of cancer. PLoS Biol. 10:e1001296.
    • (2012) PLoS Biol. , vol.10
    • Frank, S.A.1    Rosner, M.R.2
  • 15
    • 33750431363 scopus 로고    scopus 로고
    • Natural isolates of Saccharomyces cerevisiae display complex genetic variation in sporulation efficiency
    • Gerke JP, Chen CTL, Cohen BA. 2006. Natural isolates of Saccharomyces cerevisiae display complex genetic variation in sporulation efficiency. Genetics 174:985-997.
    • (2006) Genetics , vol.174 , pp. 985-997
    • Gerke, J.P.1    Chen, C.T.L.2    Cohen, B.A.3
  • 16
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • (73 co-authors)
    • Giaever G, Chu AM, Ni L, et al. (73 co-authors). 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387-391.
    • (2002) Nature , vol.418 , pp. 387-391
    • Giaever, G.1    Chu, A.M.2    Ni, L.3
  • 19
    • 42349100173 scopus 로고    scopus 로고
    • The chemical genomic portrait of yeast: Uncovering a phenotype for all genes
    • (14 co-authors)
    • Hillenmeyer ME, Fung E, Wildenhain J, et al. (14 co-authors). 2008. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320:362-365.
    • (2008) Science , vol.320 , pp. 362-365
    • Hillenmeyer, M.E.1    Fung, E.2    Wildenhain, J.3
  • 22
    • 1242300132 scopus 로고    scopus 로고
    • Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae
    • Kaniak A, Xue Z, Macool D, Kim J-H, Johnston M. 2004. Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae. Eukaryot Cell. 3:221-231.
    • (2004) Eukaryot Cell , vol.3 , pp. 221-231
    • Kaniak, A.1    Xue, Z.2    MacOol, D.3    Kim, J.-H.4    Johnston, M.5
  • 23
    • 0031719199 scopus 로고    scopus 로고
    • Growth kinetics of suspended microbial cells: From single-substrate- controlled growth to mixed-substrate kinetics
    • Kovárová-Kovar K, Egli T. 1998. Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics. Microbiol Mol Biol Rev. 62:646-666.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 646-666
    • Kovárová-Kovar, K.1    Egli, T.2
  • 24
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth, and information in fluctuating environments
    • Kussell E, Leibler S. 2005. Phenotypic diversity, population growth, and information in fluctuating environments. Science 309:2075-2078.
    • (2005) Science , vol.309 , pp. 2075-2078
    • Kussell, E.1    Leibler, S.2
  • 25
    • 84872829364 scopus 로고    scopus 로고
    • R package version 1.7-1 [cited 2013 September 14] Available from
    • Legendre P. 2011. lmodel2: Model II Regression. R package version 1.7-1. [cited 2013 September 14]. Available from: http://CRAN.R-project. org/package=lmodel2.
    • (2011) Lmodel2: Model II Regression
    • Legendre, P.1
  • 26
    • 56849091295 scopus 로고    scopus 로고
    • Network hubs buffer environmental variation in Saccharomyces cerevisiae
    • Levy SF, Siegal ML. 2008. Network hubs buffer environmental variation in Saccharomyces cerevisiae. PLoS Biol. 6:e264.
    • (2008) PLoS Biol , vol.6
    • Levy, S.F.1    Siegal, M.L.2
  • 27
    • 84861544417 scopus 로고    scopus 로고
    • Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant
    • Levy SF, Ziv N, Siegal ML. 2012. Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant. PLoS Biol. 10: e1001325.
    • (2012) PLoS Biol. , vol.10
    • Levy, S.F.1    Ziv, N.2    Siegal, M.L.3
  • 28
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • (26 co-authors)
    • Liti G, Carter DM, Moses AM, et al. (26 co-authors). 2009. Population genomics of domestic and wild yeasts. Nature 458:337-341.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1    Carter, D.M.2    Moses, A.M.3
  • 29
    • 84866170772 scopus 로고    scopus 로고
    • Advances in quantitative trait analysis in yeast
    • Liti G, Louis EJ. 2012. Advances in quantitative trait analysis in yeast. PLoS Genet. 8:e1002912.
    • (2012) PLoS Genet. , vol.8
    • Liti, G.1    Louis, E.J.2
  • 30
    • 33846120683 scopus 로고    scopus 로고
    • Overview of some theoretical approaches for derivation of the Monod equation
    • Liu Y. 2007. Overview of some theoretical approaches for derivation of the Monod equation. Appl Microbiol Biotechnol. 73:1241-1250.
    • (2007) Appl Microbiol Biotechnol , vol.73 , pp. 1241-1250
    • Liu, Y.1
  • 31
    • 0001639179 scopus 로고
    • The growth of bacterial cultures
    • Monod J. 1949. The growth of bacterial cultures. Annu Rev Microbiol. 3: 371-394.
    • (1949) Annu Rev Microbiol , vol.3 , pp. 371-394
    • Monod, J.1
  • 32
    • 79956073707 scopus 로고    scopus 로고
    • Revealing the genetic structure of a trait by sequencing a population under selection
    • (14 co-authors)
    • Parts L, Cubillos FA, Warringer J, et al. (14 co-authors). 2011. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Res. 21:1131-1138.
    • (2011) Genome Res. , vol.21 , pp. 1131-1138
    • Parts, L.1    Cubillos, F.A.2    Warringer, J.3
  • 33
    • 80053320061 scopus 로고    scopus 로고
    • Microbial growth curves: What the models tell us and what they cannot
    • PelegM, Corradini MG. 2011. Microbial growth curves: what the models tell us and what they cannot. Crit Rev Food Sci Nutr. 51:917-945.
    • (2011) Crit Rev Food Sci Nutr. , vol.51 , pp. 917-945
    • Peleg, M.1    Corradini, M.G.2
  • 34
    • 84860171972 scopus 로고    scopus 로고
    • Using cell-to-cell variability-A new era in molecular biology
    • Pelkmans L. 2012. Using cell-to-cell variability-a new era in molecular biology. Science 336:425-426.
    • (2012) Science , vol.336 , pp. 425-426
    • Pelkmans, L.1
  • 36
    • 0030891998 scopus 로고    scopus 로고
    • Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression
    • Reifenberger E, Boles E, Ciriacy M. 1997. Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression. Eur J Biochem. 245:324-333.
    • (1997) Eur J Biochem , vol.245 , pp. 324-333
    • Reifenberger, E.1    Boles, E.2    Ciriacy, M.3
  • 37
    • 4344685444 scopus 로고    scopus 로고
    • Nutritional homeostasis in batch and steady-state culture of yeast
    • Saldanha AJ, Brauer MJ, Botstein D. 2004. Nutritional homeostasis in batch and steady-state culture of yeast. Mol Biol Cell. 15:4089-4104.
    • (2004) Mol Biol Cell , vol.15 , pp. 4089-4104
    • Saldanha, A.J.1    Brauer, M.J.2    Botstein, D.3
  • 38
    • 79960943853 scopus 로고    scopus 로고
    • Bacterial growth laws and their applications
    • Scott M, Hwa T. 2011. Bacterial growth laws and their applications. Curr Opin Biotechnol. 22:559-565.
    • (2011) Curr Opin Biotechnol. , vol.22 , pp. 559-565
    • Scott, M.1    Hwa, T.2
  • 39
    • 77951081705 scopus 로고    scopus 로고
    • Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate
    • (11 co-authors)
    • Silverman SJ, Petti AA, Slavov N, et al. (11 co-authors). 2010. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. Proc Natl Acad Sci USA. 107:6946-6951.
    • (2010) Proc Natl Acad Sci USA. , vol.107 , pp. 6946-6951
    • Silverman, S.J.1    Petti, A.A.2    Slavov, N.3
  • 41
    • 43249129715 scopus 로고    scopus 로고
    • Gene-environment interaction in yeast gene expression
    • Smith EN, Kruglyak L. 2008. Gene-environment interaction in yeast gene expression. PLoS Biol. 6:e83.
    • (2008) PLoS Biol , vol.6
    • Smith, E.N.1    Kruglyak, L.2
  • 45
    • 34548168571 scopus 로고    scopus 로고
    • The effects of molecular noise and size control on variability in the budding yeast cell cycle
    • Di Talia S, SkotheimJM, Bean JM, Siggia ED, Cross FR. 2007. The effects of molecular noise and size control on variability in the budding yeast cell cycle. Nature 448:947-951.
    • (2007) Nature , vol.448 , pp. 947-951
    • Di Talia, S.1    Skotheim, J.M.2    Bean, J.M.3    Siggia, E.D.4    Cross, F.R.5
  • 46
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team Vienna (Austria): R Foundation for Statistical Computing R version 2.15.3. [cited 2013 September 14]. Available from
    • R Core Team. 2013. R: A language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing. R version 2.15.3. [cited 2013 September 14]. Available from: http://www.R-project.org/.
    • (2013) R: A Language and Environment for Statistical Computing
  • 47
    • 0020299604 scopus 로고
    • Thermodynamics of growth. Non-equilibrium thermodynamics of bacterial growth. The phenomenological and the mosaic approach
    • Westerhoff HV, Lolkema JS, Otto R, Hellingwerf KJ. 1982. Thermodynamics of growth. Non-equilibrium thermodynamics of bacterial growth. The phenomenological and the mosaic approach. Biochim Biophys Acta. 683:181-220.
    • (1982) Biochim Biophys Acta , vol.683 , pp. 181-220
    • Westerhoff, H.V.1    Lolkema, J.S.2    Otto, R.3    Hellingwerf, K.J.4
  • 48
    • 0038349351 scopus 로고    scopus 로고
    • Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs
    • Yin Z, Wilson S, Hauser NC, Tournu H, Hoheisel JD, Brown AJP. 2003. Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs. Mol Microbiol. 48:713-724.
    • (2003) Mol Microbiol , vol.48 , pp. 713-724
    • Yin, Z.1    Wilson, S.2    Hauser, N.C.3    Tournu, H.4    Hoheisel, J.D.5    Brown, A.J.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.