-
2
-
-
84886119344
-
Current approaches to identify and evaluate cancer biomarkers for patient stratification
-
Morrow WJW, Sheikh NA, Schmidt CS, Davies DH, (eds), Wiley, Oxford:
-
Rees R, Laversin S, Murray C, Ball G (2012) Current approaches to identify and evaluate cancer biomarkers for patient stratification. In: Morrow WJW, Sheikh NA, Schmidt CS, Davies DH (eds) Vaccinology: principles and Practice. Wiley, Oxford, pp 452–463
-
(2012)
Vaccinology: principles and Practice
, pp. 452-463
-
-
Rees, R.1
Laversin, S.2
Murray, C.3
Ball, G.4
-
3
-
-
0742321751
-
Anti-tumor immunity and autoimmunity: a balancing act of regulatory T cells
-
COI: 1:CAS:528:DC%2BD3sXpvVektrw%3D, PID: 14610619
-
Wei W-Z, Morris GP, Kong Y-CM (2004) Anti-tumor immunity and autoimmunity: a balancing act of regulatory T cells. Cancer Immunol Immunother 53:73–78. doi:10.1007/s00262-003-0444-1
-
(2004)
Cancer Immunol Immunother
, vol.53
, pp. 73-78
-
-
Wei, W.-Z.1
Morris, G.P.2
Kong, Y.-C.M.3
-
4
-
-
0028818052
-
Loss of HLA class I expression in prostate cancer: implications for immunotherapy
-
COI: 1:STN:280:DyaK28%2FmvF2qsg%3D%3D, PID: 7495121, (discussion 686–7)
-
Blades RA, Keating PJ, McWilliam LJ et al (1995) Loss of HLA class I expression in prostate cancer: implications for immunotherapy. Urology 46:681–686. doi:10.1016/S0090-4295(99)80301-X (discussion 686–7)
-
(1995)
Urology
, vol.46
, pp. 681-686
-
-
Blades, R.A.1
Keating, P.J.2
McWilliam, L.J.3
-
5
-
-
4644237613
-
Specific recruitment of regulatory T cells in ovarian carcinoma fosters immune privilege and predicts reduced survival
-
COI: 1:CAS:528:DC%2BD2cXntFSkt7g%3D, PID: 15322536
-
Curiel TJ, Coukos G, Zou L et al (2004) Specific recruitment of regulatory T cells in ovarian carcinoma fosters immune privilege and predicts reduced survival. Nat Med 10:942–949. doi:10.1038/nm1093
-
(2004)
Nat Med
, vol.10
, pp. 942-949
-
-
Curiel, T.J.1
Coukos, G.2
Zou, L.3
-
6
-
-
61349100687
-
Myeloid-derived suppressor cells as regulators of the immune system
-
COI: 1:CAS:528:DC%2BD1MXhsFeqsbw%3D, PID: 19197294
-
Gabrilovich DI, Nagaraj S (2009) Myeloid-derived suppressor cells as regulators of the immune system. Nat Rev Immunol 9:162–174. doi:10.1038/nri2506
-
(2009)
Nat Rev Immunol
, vol.9
, pp. 162-174
-
-
Gabrilovich, D.I.1
Nagaraj, S.2
-
7
-
-
46249124461
-
Immune escape as a fundamental trait of cancer: focus on IDO
-
COI: 1:CAS:528:DC%2BD1cXns1OnsrY%3D, PID: 18317452
-
Prendergast GC (2008) Immune escape as a fundamental trait of cancer: focus on IDO. Oncogene 27:3889–3900. doi:10.1038/onc.2008.35
-
(2008)
Oncogene
, vol.27
, pp. 3889-3900
-
-
Prendergast, G.C.1
-
8
-
-
0037223170
-
IL-4-induced arginase 1 suppresses alloreactive T cells in tumor-bearing mice
-
COI: 1:CAS:528:DC%2BD3sXhtFGqsA%3D%3D, PID: 12496409
-
Bronte V, Serafini P, De Santo C et al (2003) IL-4-induced arginase 1 suppresses alloreactive T cells in tumor-bearing mice. J Immunol 170:270–278
-
(2003)
J Immunol
, vol.170
, pp. 270-278
-
-
Bronte, V.1
Serafini, P.2
De Santo, C.3
-
9
-
-
31344442461
-
Inflammation-associated immune suppression in cancer: the roles played by cytokines, chemokines and additional mediators
-
COI: 1:CAS:528:DC%2BD28XotVCmug%3D%3D, PID: 16139507
-
Ben-Baruch A (2006) Inflammation-associated immune suppression in cancer: the roles played by cytokines, chemokines and additional mediators. Semin Cancer Biol 16:38–52
-
(2006)
Semin Cancer Biol
, vol.16
, pp. 38-52
-
-
Ben-Baruch, A.1
-
10
-
-
11144357779
-
Regulation of the innate and adaptive immune responses by Stat-3 signaling in tumor cells
-
PID: 14702634
-
Wang T, Niu G, Kortylewski M et al (2004) Regulation of the innate and adaptive immune responses by Stat-3 signaling in tumor cells. Nat Med 10:48–54. doi:10.1038/nm976
-
(2004)
Nat Med
, vol.10
, pp. 48-54
-
-
Wang, T.1
Niu, G.2
Kortylewski, M.3
-
11
-
-
5844264920
-
PD-L2 is a second ligand for PD-1 and inhibits T cell activation
-
COI: 1:CAS:528:DC%2BD3MXhvVaksrc%3D, PID: 11224527
-
Latchman Y, Wood CR, Chernova T et al (2001) PD-L2 is a second ligand for PD-1 and inhibits T cell activation. Nat Immunol 2:261–268. doi:10.1038/85330
-
(2001)
Nat Immunol
, vol.2
, pp. 261-268
-
-
Latchman, Y.1
Wood, C.R.2
Chernova, T.3
-
12
-
-
0025855156
-
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
-
COI: 1:CAS:528:DyaK3MXkt1Ogs78%3D, PID: 1709722
-
Falk K, Rötzschke O, Stevanović S et al (1991) Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules. Nature 351:290–296. doi:10.1038/351290a0
-
(1991)
Nature
, vol.351
, pp. 290-296
-
-
Falk, K.1
Rötzschke, O.2
Stevanović, S.3
-
13
-
-
0033520962
-
The crystal structure of a T cell receptor in complex with peptide and MHC class II
-
COI: 1:STN:280:DC%2BD3c%2FltV2ntw%3D%3D, PID: 10583947
-
Reinherz EL, Tan K, Tang L et al (1999) The crystal structure of a T cell receptor in complex with peptide and MHC class II. Science 286:1913–1921
-
(1999)
Science
, vol.286
, pp. 1913-1921
-
-
Reinherz, E.L.1
Tan, K.2
Tang, L.3
-
14
-
-
0027980319
-
Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules
-
COI: 1:CAS:528:DyaK2cXmtVarsb8%3D, PID: 8087844
-
Rock KL, Gramm C, Rothstein L et al (1994) Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules. Cell 78:761–771
-
(1994)
Cell
, vol.78
, pp. 761-771
-
-
Rock, K.L.1
Gramm, C.2
Rothstein, L.3
-
15
-
-
0027424659
-
Evidence that transporters associated with antigen processing translocate a major histocompatibility complex class I-binding peptide into the endoplasmic reticulum in an ATP-dependent manner
-
COI: 1:CAS:528:DyaK3sXmsVOmtr8%3D, PID: 8415666
-
Androlewicz MJ, Anderson KS, Cresswell P (1993) Evidence that transporters associated with antigen processing translocate a major histocompatibility complex class I-binding peptide into the endoplasmic reticulum in an ATP-dependent manner. Proc Natl Acad Sci USA 90:9130–9134
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 9130-9134
-
-
Androlewicz, M.J.1
Anderson, K.S.2
Cresswell, P.3
-
16
-
-
0016301253
-
On the relation of products of activated lymphocytes to cell-mediated cytolysis
-
COI: 1:CAS:528:DyaE2MXlsFyrsw%3D%3D, PID: 4370241
-
Henney CS, Gaffney J, Bloom BR (1974) On the relation of products of activated lymphocytes to cell-mediated cytolysis. J Exp Med 140:837–852
-
(1974)
J Exp Med
, vol.140
, pp. 837-852
-
-
Henney, C.S.1
Gaffney, J.2
Bloom, B.R.3
-
17
-
-
0026322151
-
A gene encoding an antigen recognized by cytolytic T lymphocytes on a human melanoma
-
PID: 1840703
-
Van der Bruggen P, Traversari C, Chomez P et al (1991) A gene encoding an antigen recognized by cytolytic T lymphocytes on a human melanoma. Science 254:1643–1647. doi:10.1126/science.1840703
-
(1991)
Science
, vol.254
, pp. 1643-1647
-
-
Van der Bruggen, P.1
Traversari, C.2
Chomez, P.3
-
18
-
-
0029924107
-
Human tumor antigens recognized by T lymphocytes
-
COI: 1:CAS:528:DyaK28XhvV2rur8%3D, PID: 8642276
-
Boon T, van der Bruggen P (1996) Human tumor antigens recognized by T lymphocytes. J Exp Med 183:725–729
-
(1996)
J Exp Med
, vol.183
, pp. 725-729
-
-
Boon, T.1
van der Bruggen, P.2
-
20
-
-
69049089548
-
The prioritization of cancer antigens: a national cancer institute pilot project for the acceleration of translational research
-
PID: 19723653
-
Cheever MA, Allison JP, Ferris AS et al (2009) The prioritization of cancer antigens: a national cancer institute pilot project for the acceleration of translational research. Clin Cancer Res 15:5323–5337. doi:10.1158/1078-0432.CCR-09-0737
-
(2009)
Clin Cancer Res
, vol.15
, pp. 5323-5337
-
-
Cheever, M.A.1
Allison, J.P.2
Ferris, A.S.3
-
21
-
-
12944325331
-
A listing of human tumor antigens recognized by T cells: March 2004 update
-
COI: 1:CAS:528:DC%2BD2MXjs1ahug%3D%3D, PID: 15309328
-
Novellino L, Castelli C, Parmiani G (2005) A listing of human tumor antigens recognized by T cells: March 2004 update. Cancer Immunol Immunother 54:187–207. doi:10.1007/s00262-004-0560-6
-
(2005)
Cancer Immunol Immunother
, vol.54
, pp. 187-207
-
-
Novellino, L.1
Castelli, C.2
Parmiani, G.3
-
22
-
-
80053343071
-
Tumor-specific antigens and immunologic adjuvants in cancer immunotherapy
-
COI: 1:CAS:528:DC%2BC3MXhsVWjsL%2FN, PID: 21952282
-
Seremet T, Brasseur F, Coulie PG (2011) Tumor-specific antigens and immunologic adjuvants in cancer immunotherapy. Cancer J 17:325–330. doi:10.1097/PPO.0b013e3182326004
-
(2011)
Cancer J
, vol.17
, pp. 325-330
-
-
Seremet, T.1
Brasseur, F.2
Coulie, P.G.3
-
23
-
-
0024316157
-
Structure of the gene of tum- transplantation antigen P91A: the mutated exon encodes a peptide recognized with Ld by cytolytic T cells
-
COI: 1:CAS:528:DyaK3cXitlSmtrw%3D, PID: 2568889
-
Lurquin C, Van Pel A, Mariamé B et al (1989) Structure of the gene of tum- transplantation antigen P91A: the mutated exon encodes a peptide recognized with Ld by cytolytic T cells. Cell 58:293–303
-
(1989)
Cell
, vol.58
, pp. 293-303
-
-
Lurquin, C.1
Van Pel, A.2
Mariamé, B.3
-
24
-
-
0023068367
-
The structural basis of antigen-antibody recognition
-
COI: 1:CAS:528:DyaL2sXkslGltLg%3D, PID: 2439094
-
Mariuzza RA, Phillips SE, Poljak RJ (1987) The structural basis of antigen-antibody recognition. Annu Rev Biophys Biophys Chem 16:139–159. doi:10.1146/annurev.bb.16.060187.001035
-
(1987)
Annu Rev Biophys Biophys Chem
, vol.16
, pp. 139-159
-
-
Mariuzza, R.A.1
Phillips, S.E.2
Poljak, R.J.3
-
25
-
-
0036852241
-
Cancer immunoediting: from immunosurveillance to tumor escape
-
COI: 1:CAS:528:DC%2BD38Xot1Chs70%3D, PID: 12407406
-
Dunn GP, Bruce AT, Ikeda H et al (2002) Cancer immunoediting: from immunosurveillance to tumor escape. Nat Immunol 3:991–998. doi:10.1038/ni1102-991
-
(2002)
Nat Immunol
, vol.3
, pp. 991-998
-
-
Dunn, G.P.1
Bruce, A.T.2
Ikeda, H.3
-
26
-
-
0033787577
-
Reverse vaccinology
-
COI: 1:CAS:528:DC%2BD3cXotVOit70%3D, PID: 11050440
-
Rappuoli R (2000) Reverse vaccinology. Curr Opin Microbiol 3:445–450
-
(2000)
Curr Opin Microbiol
, vol.3
, pp. 445-450
-
-
Rappuoli, R.1
-
27
-
-
84862152481
-
Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity
-
COI: 1:CAS:528:DC%2BC38Xot1Kgsbc%3D, PID: 22678897
-
Harndahl M, Rasmussen M, Roder G et al (2012) Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. Eur J Immunol 42:1405–1416. doi:10.1002/eji.201141774
-
(2012)
Eur J Immunol
, vol.42
, pp. 1405-1416
-
-
Harndahl, M.1
Rasmussen, M.2
Roder, G.3
-
28
-
-
33646181088
-
How TCRs bind MHCs, peptides, and coreceptors
-
COI: 1:CAS:528:DC%2BD28XkvFSqtLw%3D, PID: 16551255
-
Rudolph MG, Stanfield RL, Wilson IA (2006) How TCRs bind MHCs, peptides, and coreceptors. Annu Rev Immunol 24:419–466. doi:10.1146/annurev.immunol.23.021704.115658
-
(2006)
Annu Rev Immunol
, vol.24
, pp. 419-466
-
-
Rudolph, M.G.1
Stanfield, R.L.2
Wilson, I.A.3
-
29
-
-
0035939903
-
Delineation of prognostic biomarkers in prostate cancer
-
COI: 1:CAS:528:DC%2BD3MXms1arur0%3D, PID: 11518967
-
Dhanasekaran SM, Barrette TR, Ghosh D et al (2001) Delineation of prognostic biomarkers in prostate cancer. Nature 412:822–826. doi:10.1038/35090585
-
(2001)
Nature
, vol.412
, pp. 822-826
-
-
Dhanasekaran, S.M.1
Barrette, T.R.2
Ghosh, D.3
-
30
-
-
12344267687
-
Gene expression signature with independent prognostic significance in epithelial ovarian cancer
-
PID: 15505275
-
Spentzos D, Levine DA, Ramoni MF et al (2004) Gene expression signature with independent prognostic significance in epithelial ovarian cancer. J Clin Oncol 22:4700–4710. doi:10.1200/JCO.2004.04.070
-
(2004)
J Clin Oncol
, vol.22
, pp. 4700-4710
-
-
Spentzos, D.1
Levine, D.A.2
Ramoni, M.F.3
-
31
-
-
33748693297
-
Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer
-
COI: 1:CAS:528:DC%2BD28Xps1yjtLw%3D, PID: 16954471
-
Buyse M, Loi S, van’t Veer L et al (2006) Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer. J Natl Cancer Inst 98:1183–1192. doi:10.1093/jnci/djj329
-
(2006)
J Natl Cancer Inst
, vol.98
, pp. 1183-1192
-
-
Buyse, M.1
Loi, S.2
van’t Veer, L.3
-
32
-
-
73649123907
-
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
-
COI: 1:CAS:528:DC%2BC3cXkvFKgsL4%3D, PID: 20129251
-
Verhaak RGW, Hoadley KA, Purdom E et al (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17:98–110. doi:10.1016/j.ccr.2009.12.020
-
(2010)
Cancer Cell
, vol.17
, pp. 98-110
-
-
Verhaak, R.G.W.1
Hoadley, K.A.2
Purdom, E.3
-
33
-
-
83455176258
-
Mosaic amplification of multiple receptor tyrosine kinase genes in glioblastoma
-
COI: 1:CAS:528:DC%2BC3MXhs1Cit7%2FN, PID: 22137795
-
Snuderl M, Fazlollahi L, Le LP et al (2011) Mosaic amplification of multiple receptor tyrosine kinase genes in glioblastoma. Cancer Cell 20:810–817. doi:10.1016/j.ccr.2011.11.005
-
(2011)
Cancer Cell
, vol.20
, pp. 810-817
-
-
Snuderl, M.1
Fazlollahi, L.2
Le, L.P.3
-
34
-
-
84874598318
-
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
-
COI: 1:CAS:528:DC%2BC3sXltVWms7c%3D, PID: 23412337
-
Sottoriva A, Spiteri I, Piccirillo SGM et al (2013) Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics. Proc Natl Acad Sci USA 110:4009–4014. doi:10.1073/pnas.1219747110
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 4009-4014
-
-
Sottoriva, A.1
Spiteri, I.2
Piccirillo, S.G.M.3
-
35
-
-
0037137510
-
HLA class I antigen loss, tumor immune escape and immune selection
-
COI: 1:CAS:528:DC%2BD38XptlSqu78%3D, PID: 12477427
-
Campoli M, Chang C-C, Ferrone S (2002) HLA class I antigen loss, tumor immune escape and immune selection. Vaccine 20(Suppl 4):A40–A45
-
(2002)
Vaccine
, vol.20
, pp. A40-A45
-
-
Campoli, M.1
Chang, C.-C.2
Ferrone, S.3
-
36
-
-
12444262173
-
Immune selection of hot-spot beta 2-microglobulin gene mutations, HLA-A2 allospecificity loss, and antigen-processing machinery component down-regulation in melanoma cells derived from recurrent metastases following immunotherapy
-
COI: 1:CAS:528:DC%2BD2MXlsFyntQ%3D%3D, PID: 15661905
-
Chang C-C, Campoli M, Restifo NP et al (2005) Immune selection of hot-spot beta 2-microglobulin gene mutations, HLA-A2 allospecificity loss, and antigen-processing machinery component down-regulation in melanoma cells derived from recurrent metastases following immunotherapy. J Immunol 174:1462–1471
-
(2005)
J Immunol
, vol.174
, pp. 1462-1471
-
-
Chang, C.-C.1
Campoli, M.2
Restifo, N.P.3
-
37
-
-
0034242314
-
Profiling the immune responses in patient sera with peptide and cDNA display libraries
-
COI: 1:CAS:528:DC%2BD3cXlsV2ks70%3D, PID: 10891554
-
Sioud M, Hansen M, Dybwad A (2000) Profiling the immune responses in patient sera with peptide and cDNA display libraries. Int J Mol Med 6:123–128
-
(2000)
Int J Mol Med
, vol.6
, pp. 123-128
-
-
Sioud, M.1
Hansen, M.2
Dybwad, A.3
-
38
-
-
0037434981
-
Disease proteomics
-
COI: 1:CAS:528:DC%2BD3sXhvFKgs7Y%3D, PID: 12634796
-
Hanash S (2003) Disease proteomics. Nature 422:226–232. doi:10.1038/nature01514
-
(2003)
Nature
, vol.422
, pp. 226-232
-
-
Hanash, S.1
-
39
-
-
0033794854
-
Identifying potential tumor markers and antigens by database mining and rapid expression screening
-
COI: 1:CAS:528:DC%2BD3cXms1yjurk%3D, PID: 10984457
-
Loging WT, Lal A, Siu IM et al (2000) Identifying potential tumor markers and antigens by database mining and rapid expression screening. Genome Res 10:1393–1402
-
(2000)
Genome Res
, vol.10
, pp. 1393-1402
-
-
Loging, W.T.1
Lal, A.2
Siu, I.M.3
-
40
-
-
0036533610
-
Identification of cancer/testis genes by database mining and mRNA expression analysis
-
COI: 1:CAS:528:DC%2BD38XitlSrtbY%3D, PID: 11920606
-
Scanlan MJ, Gordon CM, Williamson B et al (2002) Identification of cancer/testis genes by database mining and mRNA expression analysis. Int J Cancer 98:485–492
-
(2002)
Int J Cancer
, vol.98
, pp. 485-492
-
-
Scanlan, M.J.1
Gordon, C.M.2
Williamson, B.3
-
41
-
-
0031963203
-
DNA chips: state-of-the art
-
COI: 1:CAS:528:DyaK1cXjsVygug%3D%3D, PID: 9447591
-
Ramsay G (1998) DNA chips: state-of-the art. Nat Biotechnol 16:40–44. doi:10.1038/nbt0198-40
-
(1998)
Nat Biotechnol
, vol.16
, pp. 40-44
-
-
Ramsay, G.1
-
42
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
COI: 1:CAS:528:DC%2BD1cXhsFWis7bL, PID: 19015660
-
Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57–63. doi:10.1038/nrg2484
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
43
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
PID: 15461798
-
Gentleman RC, Carey VJ, Bates DM et al (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5:R80. doi:10.1186/gb-2004-5-10-r80
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
-
44
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
PID: 12925520
-
Irizarry RA, Hobbs B, Collin F et al (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249–264. doi:10.1093/biostatistics/4.2.249
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
-
45
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3:Article3
-
Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3:Article3. doi: 10.2202/1544-6115.1027
-
(2004)
doi: 10.2202/1544-6115.1027
-
-
Smyth, G.K.1
-
46
-
-
79955934629
-
Gitools: analysis and visualisation of genomic data using interactive heat-maps
-
COI: 1:CAS:528:DC%2BC3MXmsV2is7s%3D, PID: 21602921
-
Perez-Llamas C, Lopez-Bigas N (2011) Gitools: analysis and visualisation of genomic data using interactive heat-maps. PLoS ONE 6:e19541. doi:10.1371/journal.pone.0019541
-
(2011)
PLoS ONE
, vol.6
, pp. e19541
-
-
Perez-Llamas, C.1
Lopez-Bigas, N.2
-
47
-
-
33646852824
-
Immunotheranostics: breaking tolerance in immunotherapy using tumor autoantigens identified on protein microarrays
-
COI: 1:CAS:528:DC%2BD28XltVantbs%3D
-
Chatterjee M, Draghici S, Tainsky MA (2006) Immunotheranostics: breaking tolerance in immunotherapy using tumor autoantigens identified on protein microarrays. Curr Opin Drug Discov Dev 9:380–385
-
(2006)
Curr Opin Drug Discov Dev
, vol.9
, pp. 380-385
-
-
Chatterjee, M.1
Draghici, S.2
Tainsky, M.A.3
-
48
-
-
0037250740
-
Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers
-
COI: 1:CAS:528:DC%2BD3sXpvFSmug%3D%3D, PID: 12548634
-
Miller JC, Zhou H, Kwekel J et al (2003) Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers. Proteomics 3:56–63. doi:10.1002/pmic.200390009
-
(2003)
Proteomics
, vol.3
, pp. 56-63
-
-
Miller, J.C.1
Zhou, H.2
Kwekel, J.3
-
49
-
-
41649100689
-
Mining the plasma proteome for cancer biomarkers
-
COI: 1:CAS:528:DC%2BD1cXktFCgt7g%3D, PID: 18385731
-
Hanash SM, Pitteri SJ, Faca VM (2008) Mining the plasma proteome for cancer biomarkers. Nature 452:571–579. doi:10.1038/nature06916
-
(2008)
Nature
, vol.452
, pp. 571-579
-
-
Hanash, S.M.1
Pitteri, S.J.2
Faca, V.M.3
-
50
-
-
79955750055
-
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
-
COI: 1:CAS:528:DC%2BC3MXlsVKrsrk%3D, PID: 21551058
-
Bendall SC, Simonds EF, Qiu P et al (2011) Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 332:687–696. doi:10.1126/science.1198704
-
(2011)
Science
, vol.332
, pp. 687-696
-
-
Bendall, S.C.1
Simonds, E.F.2
Qiu, P.3
-
51
-
-
84862333922
-
Integrated proteomic, transcriptomic, and biological network analysis of breast carcinoma reveals molecular features of tumorigenesis and clinical relapse
-
014910,PID: 22240506
-
Imielinski M, Cha S, Rejtar T et al (2012) Integrated proteomic, transcriptomic, and biological network analysis of breast carcinoma reveals molecular features of tumorigenesis and clinical relapse. Mol Cell Proteomics 11(M111):014910. doi:10.1074/mcp.M111.014910
-
(2012)
Mol Cell Proteomics
, vol.11
, Issue.M111
-
-
Imielinski, M.1
Cha, S.2
Rejtar, T.3
-
52
-
-
77956304093
-
Mass spectrometry in high-throughput proteomics: ready for the big time
-
COI: 1:CAS:528:DC%2BC3cXhtV2hsb3E, PID: 20805795
-
Nilsson T, Mann M, Aebersold R et al (2010) Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods 7:681–685. doi:10.1038/nmeth0910-681
-
(2010)
Nat Methods
, vol.7
, pp. 681-685
-
-
Nilsson, T.1
Mann, M.2
Aebersold, R.3
-
53
-
-
84874271270
-
NCBI GEO: archive for functional genomics data sets—update
-
COI: 1:CAS:528:DC%2BC38XhvV2ksb%2FL, PID: 23193258
-
Barrett T, Wilhite SE, Ledoux P et al (2013) NCBI GEO: archive for functional genomics data sets—update. Nucleic Acids Res 41:D991–D995. doi:10.1093/nar/gks1193
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D991-D995
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
-
54
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
COI: 1:CAS:528:DC%2BD3MXovFamurw%3D, PID: 11726920
-
Brazma A, Hingamp P, Quackenbush J et al (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29:365–371. doi:10.1038/ng1201-365
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
-
55
-
-
33847246805
-
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
-
COI: 1:CAS:528:DC%2BD2sXktVaru74%3D, PID: 17356713
-
Rhodes DR, Kalyana-Sundaram S, Mahavisno V et al (2007) Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia 9:166–180
-
(2007)
Neoplasia
, vol.9
, pp. 166-180
-
-
Rhodes, D.R.1
Kalyana-Sundaram, S.2
Mahavisno, V.3
-
56
-
-
84876569352
-
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
-
COI: 1:CAS:528:DC%2BC38XhvV2ksbrF, PID: 23143109
-
Bagger FO, Rapin N, Theilgaard-Mönch K et al (2013) HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis. Nucleic Acids Res 41:D1034–D1039. doi:10.1093/nar/gks1021
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1034-D1039
-
-
Bagger, F.O.1
Rapin, N.2
Theilgaard-Mönch, K.3
-
57
-
-
84863502981
-
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis
-
COI: 1:CAS:528:DC%2BC38XhtFSgtLzE, PID: 22745298
-
Bagger FO, Rapin N, Theilgaard-Mönch K et al (2012) HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis. Blood 119:6394–6395. doi:10.1182/blood-2012-05-427310
-
(2012)
Blood
, vol.119
, pp. 6394-6395
-
-
Bagger, F.O.1
Rapin, N.2
Theilgaard-Mönch, K.3
-
58
-
-
68949205722
-
Correlations between RNA and protein expression profiles in 23 human cell lines
-
Gry M, Rimini R, Strömberg S et al (2009) Correlations between RNA and protein expression profiles in 23 human cell lines. BMC Genom 10:365. doi:10.1186/1471-2164-10-365
-
(2009)
BMC Genom
, vol.10
, pp. 365
-
-
Gry, M.1
Rimini, R.2
Strömberg, S.3
-
59
-
-
78650034777
-
Towards a knowledge-based human protein atlas
-
COI: 1:CAS:528:DC%2BC3cXhsFals7nO, PID: 21139605
-
Uhlen M, Oksvold P, Fagerberg L et al (2010) Towards a knowledge-based human protein atlas. Nat Biotechnol 28:1248–1250. doi:10.1038/nbt1210-1248
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
-
60
-
-
84874229740
-
The 2013 nucleic acids research database issue and the online molecular biology database collection
-
PID: 23203983
-
Fernández-Suárez XM, Galperin MY (2013) The 2013 nucleic acids research database issue and the online molecular biology database collection. Nucleic Acids Res 41:D1–D7. doi:10.1093/nar/gks1297
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1-D7
-
-
Fernández-Suárez, X.M.1
Galperin, M.Y.2
-
62
-
-
58149186474
-
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens
-
COI: 1:CAS:528:DC%2BD1cXhsFejtLnI, PID: 18838390
-
Almeida LG, Sakabe NJ, deOliveira AR et al (2009) CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res 37:D816–D819. doi:10.1093/nar/gkn673
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D816-D819
-
-
Almeida, L.G.1
Sakabe, N.J.2
deOliveira, A.R.3
-
63
-
-
37049183697
-
Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene
-
COI: 1:CAS:528:DyaL2sXhtVSht7s%3D, PID: 3798106
-
Slamon DJ, Clark GM, Wong SG et al (1987) Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science 235:177–182
-
(1987)
Science
, vol.235
, pp. 177-182
-
-
Slamon, D.J.1
Clark, G.M.2
Wong, S.G.3
-
64
-
-
0026793986
-
Overexpression of HER-2/neu and its relationship with other prognostic factors change during the progression of in situ to invasive breast cancer
-
COI: 1:STN:280:DyaK38zoslOjtA%3D%3D, PID: 1355464
-
Allred DC, Clark GM, Molina R et al (1992) Overexpression of HER-2/neu and its relationship with other prognostic factors change during the progression of in situ to invasive breast cancer. Hum Pathol 23:974–979
-
(1992)
Hum Pathol
, vol.23
, pp. 974-979
-
-
Allred, D.C.1
Clark, G.M.2
Molina, R.3
-
65
-
-
0029053749
-
Identification of an immunodominant peptide of HER-2/neu protooncogene recognized by ovarian tumor-specific cytotoxic T lymphocyte lines
-
COI: 1:CAS:528:DyaK2MXlvFSjtLY%3D, PID: 7539040
-
Fisk B, Blevins TL, Wharton JT, Ioannides CG (1995) Identification of an immunodominant peptide of HER-2/neu protooncogene recognized by ovarian tumor-specific cytotoxic T lymphocyte lines. J Exp Med 181:2109–2117
-
(1995)
J Exp Med
, vol.181
, pp. 2109-2117
-
-
Fisk, B.1
Blevins, T.L.2
Wharton, J.T.3
Ioannides, C.G.4
-
66
-
-
0026610881
-
Humanization of an anti-p185HER2 antibody for human cancer therapy
-
COI: 1:CAS:528:DyaK3sXitFSqtb0%3D, PID: 1350088
-
Carter P, Presta L, Gorman CM et al (1992) Humanization of an anti-p185HER2 antibody for human cancer therapy. Proc Natl Acad Sci USA 89:4285–4289
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 4285-4289
-
-
Carter, P.1
Presta, L.2
Gorman, C.M.3
-
67
-
-
84876097557
-
ArrayExpress update—trends in database growth and links to data analysis tools
-
COI: 1:CAS:528:DC%2BC38XhvV2ksbjP, PID: 23193272
-
Rustici G, Kolesnikov N, Brandizi M et al (2013) ArrayExpress update—trends in database growth and links to data analysis tools. Nucleic Acids Res 41:D987–D990. doi:10.1093/nar/gks1174
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D987-D990
-
-
Rustici, G.1
Kolesnikov, N.2
Brandizi, M.3
-
68
-
-
58149189856
-
McKusick’s online Mendelian inheritance in man (OMIM)
-
COI: 1:CAS:528:DC%2BD1cXhsFejtb%2FM, PID: 18842627
-
Amberger J, Bocchini CA, Scott AF, Hamosh A (2009) McKusick’s online Mendelian inheritance in man (OMIM). Nucleic Acids Res 37:D793–D796. doi:10.1093/nar/gkn665
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D793-D796
-
-
Amberger, J.1
Bocchini, C.A.2
Scott, A.F.3
Hamosh, A.4
-
69
-
-
84875391572
-
Ensembl 2013
-
COI: 1:CAS:528:DC%2BC38XhvV2ktrbO, PID: 23203987
-
Flicek P, Ahmed I, Amode MR et al (2013) Ensembl 2013. Nucleic Acids Res 41:D48–D55. doi:10.1093/nar/gks1236
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
-
72
-
-
84874724662
-
Update on activities at the Universal Protein Resource (UniProt) in 2013
-
The UniProt Consortium (2013) Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res 41:D43–D47. doi:10.1093/nar/gks1068
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D43-D47
-
-
The UniProt Consortium1
-
73
-
-
78651330430
-
COSMIC: mining complete cancer genomes in the catalogue of somatic mutations in cancer
-
COI: 1:CAS:528:DC%2BC3sXivF2msbo%3D, PID: 20952405
-
Forbes SA, Bindal N, Bamford S et al (2011) COSMIC: mining complete cancer genomes in the catalogue of somatic mutations in cancer. Nucleic Acids Res 39:D945–D950. doi:10.1093/nar/gkq929
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D945-D950
-
-
Forbes, S.A.1
Bindal, N.2
Bamford, S.3
-
74
-
-
0033849945
-
A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates
-
PID: 10968984
-
Holzhütter HG, Kloetzel PM (2000) A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates. Biophys J 79:1196–1205. doi:10.1016/S0006-3495(00)76374-0
-
(2000)
Biophys J
, vol.79
, pp. 1196-1205
-
-
Holzhütter, H.G.1
Kloetzel, P.M.2
-
75
-
-
0034607546
-
An algorithm for the prediction of proteasomal cleavages
-
COI: 1:CAS:528:DC%2BD3cXisFeks7g%3D, PID: 10772860
-
Kuttler C, Nussbaum AK, Dick TP et al (2000) An algorithm for the prediction of proteasomal cleavages. J Mol Biol 298:417–429. doi:10.1006/jmbi.2000.3683
-
(2000)
J Mol Biol
, vol.298
, pp. 417-429
-
-
Kuttler, C.1
Nussbaum, A.K.2
Dick, T.P.3
-
76
-
-
0036096708
-
Prediction of proteasome cleavage motifs by neural networks
-
PID: 11983929
-
Keşmir C, Nussbaum AK, Schild H et al (2002) Prediction of proteasome cleavage motifs by neural networks. Protein Eng 15:287–296
-
(2002)
Protein Eng
, vol.15
, pp. 287-296
-
-
Keşmir, C.1
Nussbaum, A.K.2
Schild, H.3
-
77
-
-
0041589474
-
Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors
-
COI: 1:CAS:528:DC%2BD3sXmtVWntrY%3D, PID: 12902473
-
Peters B, Bulik S, Tampe R et al (2003) Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors. J Immunol 171:1741–1749
-
(2003)
J Immunol
, vol.171
, pp. 1741-1749
-
-
Peters, B.1
Bulik, S.2
Tampe, R.3
-
78
-
-
33845798193
-
PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing
-
PID: 16719926
-
Zhang GL, Petrovsky N, Kwoh CK et al (2006) PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing. Immunome Res 2:3. doi:10.1186/1745-7580-2-3
-
(2006)
Immunome Res
, vol.2
, pp. 3
-
-
Zhang, G.L.1
Petrovsky, N.2
Kwoh, C.K.3
-
79
-
-
44649132068
-
TAPPred prediction of TAP-binding peptides in antigens
-
COI: 1:CAS:528:DC%2BD2sXovFWlsb8%3D, PID: 18450016
-
Bhasin M, Lata S, Raghava GPS (2007) TAPPred prediction of TAP-binding peptides in antigens. Methods Mol Biol 409:381–386. doi:10.1007/978-1-60327-118-9_28
-
(2007)
Methods Mol Biol
, vol.409
, pp. 381-386
-
-
Bhasin, M.1
Lata, S.2
Raghava, G.P.S.3
-
80
-
-
0038350948
-
Predicting proteasomal cleavage sites: a comparison of available methods
-
PID: 12807816
-
Saxová P, Buus S, Brunak S, Keşmir C (2003) Predicting proteasomal cleavage sites: a comparison of available methods. Int Immunol 15:781–787
-
(2003)
Int Immunol
, vol.15
, pp. 781-787
-
-
Saxová, P.1
Buus, S.2
Brunak, S.3
Keşmir, C.4
-
81
-
-
81255157774
-
Machine learning competition in immunology—prediction of HLA class I binding peptides
-
COI: 1:CAS:528:DC%2BC3MXhsV2msLnP, PID: 21986107
-
Zhang GL, Ansari HR, Bradley P et al (2011) Machine learning competition in immunology—prediction of HLA class I binding peptides. J Immunol Methods 374:1–4. doi:10.1016/j.jim.2011.09.010
-
(2011)
J Immunol Methods
, vol.374
, pp. 1-4
-
-
Zhang, G.L.1
Ansari, H.R.2
Bradley, P.3
-
82
-
-
42549105195
-
Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research
-
PID: 18366636
-
Lin HH, Ray S, Tongchusak S et al (2008) Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunol 9:8. doi:10.1186/1471-2172-9-8
-
(2008)
BMC Immunol
, vol.9
, pp. 8
-
-
Lin, H.H.1
Ray, S.2
Tongchusak, S.3
-
83
-
-
57649174707
-
Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research
-
Lin HH, Zhang GL, Tongchusak S et al (2008) Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinform 9(Suppl 12):S22. doi:10.1186/1471-2105-9-S12-S22
-
(2008)
BMC Bioinform
, vol.9
, pp. S22
-
-
Lin, H.H.1
Zhang, G.L.2
Tongchusak, S.3
-
84
-
-
44349146151
-
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
-
COI: 1:CAS:528:DC%2BD1cXmtVaisL0%3D, PID: 18413329
-
Lundegaard C, Lund O, Nielsen M (2008) Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinformatics 24:1397–1398. doi:10.1093/bioinformatics/btn128
-
(2008)
Bioinformatics
, vol.24
, pp. 1397-1398
-
-
Lundegaard, C.1
Lund, O.2
Nielsen, M.3
-
85
-
-
70449359806
-
NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
-
Nielsen M, Lund O (2009) NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. BMC Bioinform 10:296. doi:10.1186/1471-2105-10-296
-
(2009)
BMC Bioinform
, vol.10
, pp. 296
-
-
Nielsen, M.1
Lund, O.2
-
86
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
COI: 1:CAS:528:DyaK2cXhtlWlsLY%3D, PID: 8254189
-
Parker KC, Bednarek MA, Coligan JE (1994) Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 152:163–175
-
(1994)
J Immunol
, vol.152
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
87
-
-
44649153892
-
SYFPEITHI: database for searching and T-cell epitope prediction
-
COI: 1:CAS:528:DC%2BD2sXovFWlsrk%3D, PID: 18449993
-
Schuler MM, Nastke M-D, Stevanovikć S (2007) SYFPEITHI: database for searching and T-cell epitope prediction. Methods Mol Biol 409:75–93
-
(2007)
Methods Mol Biol
, vol.409
, pp. 75-93
-
-
Schuler, M.M.1
Nastke, M.-D.2
Stevanovikć, S.3
-
88
-
-
81255197618
-
Ensemble approaches for improving HLA class I-peptide binding prediction
-
COI: 1:CAS:528:DC%2BC3MXhsV2msLnF, PID: 20849860
-
Hu X, Mamitsuka H, Zhu S (2011) Ensemble approaches for improving HLA class I-peptide binding prediction. J Immunol Methods 374:47–52. doi:10.1016/j.jim.2010.09.007
-
(2011)
J Immunol Methods
, vol.374
, pp. 47-52
-
-
Hu, X.1
Mamitsuka, H.2
Zhu, S.3
-
89
-
-
81255152491
-
Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodings
-
COI: 1:CAS:528:DC%2BC3MXhsV2msLnL, PID: 20934429
-
Huang JC, Jojic N (2011) Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodings. J Immunol Methods 374:35–42. doi:10.1016/j.jim.2010.10.001
-
(2011)
J Immunol Methods
, vol.374
, pp. 35-42
-
-
Huang, J.C.1
Jojic, N.2
-
90
-
-
39549084433
-
NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence
-
PID: 17726526
-
Nielsen M, Lundegaard C, Blicher T et al (2007) NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence. PLoS ONE 2:e796. doi:10.1371/journal.pone.0000796
-
(2007)
PLoS ONE
, vol.2
, pp. e796
-
-
Nielsen, M.1
Lundegaard, C.2
Blicher, T.3
-
91
-
-
38049169092
-
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
-
Larsen MV, Lundegaard C, Lamberth K et al (2007) Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinform 8:424. doi:10.1186/1471-2105-8-424
-
(2007)
BMC Bioinform
, vol.8
, pp. 424
-
-
Larsen, M.V.1
Lundegaard, C.2
Lamberth, K.3
-
92
-
-
46649086131
-
Amino acid similarity accounts for T cell cross-reactivity and for “holes” in the T cell repertoire
-
PID: 18350167
-
Frankild S, de Boer RJ, Lund O et al (2008) Amino acid similarity accounts for T cell cross-reactivity and for “holes” in the T cell repertoire. PLoS ONE 3:e1831. doi:10.1371/journal.pone.0001831
-
(2008)
PLoS ONE
, vol.3
, pp. e1831
-
-
Frankild, S.1
de Boer, R.J.2
Lund, O.3
-
93
-
-
84873019458
-
A flexible docking approach for prediction of T cell receptor–peptide–MHC complexes
-
COI: 1:CAS:528:DC%2BC38XhvVeksrjE, PID: 23109003
-
Pierce BG, Weng Z (2013) A flexible docking approach for prediction of T cell receptor–peptide–MHC complexes. Protein Sci 22:35–46. doi:10.1002/pro.2181
-
(2013)
Protein Sci
, vol.22
, pp. 35-46
-
-
Pierce, B.G.1
Weng, Z.2
-
94
-
-
81055124275
-
POPISK: T-cell reactivity prediction using support vector machines and string kernels
-
COI: 1:CAS:528:DC%2BC38XltFWqtQ%3D%3D
-
Tung C-W, Ziehm M, Kämper A et al (2011) POPISK: T-cell reactivity prediction using support vector machines and string kernels. BMC Bioinform 12:446. doi:10.1186/1471-2105-12-446
-
(2011)
BMC Bioinform
, vol.12
, pp. 446
-
-
Tung, C.-W.1
Ziehm, M.2
Kämper, A.3
-
95
-
-
84871434208
-
PAAQD: predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors
-
COI: 1:CAS:528:DC%2BC38Xhs1agtrfN, PID: 23058674
-
Saethang T, Hirose O, Kimkong I et al (2013) PAAQD: predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors. J Immunol Methods 387:293–302. doi:10.1016/j.jim.2012.09.016
-
(2013)
J Immunol Methods
, vol.387
, pp. 293-302
-
-
Saethang, T.1
Hirose, O.2
Kimkong, I.3
-
96
-
-
84867636845
-
Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using peptide block entropy
-
PID: 22566858
-
Olsen LR, Zhang GL, Keskin DB et al (2011) Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using peptide block entropy. Front Immunol 2:69. doi:10.3389/fimmu.2011.00069
-
(2011)
Front Immunol
, vol.2
, pp. 69
-
-
Olsen, L.R.1
Zhang, G.L.2
Keskin, D.B.3
-
97
-
-
0033565301
-
Identification of new HER2/neu-derived peptide epitopes that can elicit specific CTL against autologous and allogeneic carcinomas and melanomas
-
COI: 1:CAS:528:DyaK1MXksVens7g%3D, PID: 10395702
-
Rongcun Y, Salazar-Onfray F, Charo J et al (1999) Identification of new HER2/neu-derived peptide epitopes that can elicit specific CTL against autologous and allogeneic carcinomas and melanomas. J Immunol 163:1037–1044
-
(1999)
J Immunol
, vol.163
, pp. 1037-1044
-
-
Rongcun, Y.1
Salazar-Onfray, F.2
Charo, J.3
-
98
-
-
78049489760
-
Molecular detection of targeted major histocompatibility complex I-bound peptides using a probabilistic measure and nanospray MS(3) on a hybrid quadrupole-linear ion trap
-
COI: 1:CAS:528:DC%2BC3cXht1KhsbbM, PID: 20932029
-
Reinhold B, Keskin DB, Reinherz EL (2010) Molecular detection of targeted major histocompatibility complex I-bound peptides using a probabilistic measure and nanospray MS(3) on a hybrid quadrupole-linear ion trap. Anal Chem 82:9090–9099. doi:10.1021/ac102387t
-
(2010)
Anal Chem
, vol.82
, pp. 9090-9099
-
-
Reinhold, B.1
Keskin, D.B.2
Reinherz, E.L.3
-
99
-
-
84871482694
-
Parallel detection of antigen-specific T cell responses by combinatorial encoding of MHC multimers
-
COI: 1:CAS:528:DC%2BC38XlsVSgsLY%3D, PID: 22498709
-
Andersen RS, Kvistborg P, Frøsig TM et al (2012) Parallel detection of antigen-specific T cell responses by combinatorial encoding of MHC multimers. Nat Protoc 7:891–902. doi:10.1038/nprot.2012.037
-
(2012)
Nat Protoc
, vol.7
, pp. 891-902
-
-
Andersen, R.S.1
Kvistborg, P.2
Frøsig, T.M.3
-
100
-
-
84861660542
-
HLA DNA typing: past, present, and future
-
COI: 1:CAS:528:DC%2BC38XhtlyntrnM, PID: 22651253
-
Erlich H (2012) HLA DNA typing: past, present, and future. Tissue Antigens 80:1–11. doi:10.1111/j.1399-0039.2012.01881.x
-
(2012)
Tissue Antigens
, vol.80
, pp. 1-11
-
-
Erlich, H.1
-
101
-
-
0032146234
-
HLA supertypes and supermotifs: a functional perspective on HLA polymorphism
-
COI: 1:CAS:528:DyaK1cXlsFemtb8%3D, PID: 9722926
-
Sette A, Sidney J (1998) HLA supertypes and supermotifs: a functional perspective on HLA polymorphism. Curr Opin Immunol 10:478–482
-
(1998)
Curr Opin Immunol
, vol.10
, pp. 478-482
-
-
Sette, A.1
Sidney, J.2
-
102
-
-
0033388724
-
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
-
COI: 1:CAS:528:DyaK1MXntlalsbo%3D, PID: 10602880
-
Sette A, Sidney J (1999) Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 50:201–212
-
(1999)
Immunogenetics
, vol.50
, pp. 201-212
-
-
Sette, A.1
Sidney, J.2
-
103
-
-
84873593975
-
The IMGT/HLA database
-
COI: 1:CAS:528:DC%2BC38XhvV2ktrzL, PID: 23080122
-
Robinson J, Halliwell JA, McWilliam H et al (2013) The IMGT/HLA database. Nucleic Acids Res 41:D1222–D1227. doi:10.1093/nar/gks949
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1222-D1227
-
-
Robinson, J.1
Halliwell, J.A.2
McWilliam, H.3
-
104
-
-
3242886601
-
The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences
-
COI: 1:CAS:528:DC%2BD2cXlvFKntr4%3D, PID: 15215374
-
Helmberg W, Dunivin R, Feolo M (2004) The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences. Nucleic Acids Res 32:W173–W175. doi:10.1093/nar/gkh424
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W173-W175
-
-
Helmberg, W.1
Dunivin, R.2
Feolo, M.3
-
105
-
-
78651292217
-
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations
-
COI: 1:CAS:528:DC%2BC3sXivF2ls7k%3D, PID: 21062830
-
Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR (2011) Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res 39:D913–D919. doi:10.1093/nar/gkq1128
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D913-D919
-
-
Gonzalez-Galarza, F.F.1
Christmas, S.2
Middleton, D.3
Jones, A.R.4
-
106
-
-
84866601621
-
Bioinformatic databases and resources in the public domain to aid HLA research
-
COI: 1:CAS:528:DC%2BC38XhslSku7zI, PID: 22994154
-
Helmberg W (2012) Bioinformatic databases and resources in the public domain to aid HLA research. Tissue Antigens 80:295–304. doi:10.1111/tan.12000
-
(2012)
Tissue Antigens
, vol.80
, pp. 295-304
-
-
Helmberg, W.1
-
107
-
-
0037021662
-
Association of HLA class I and II alleles and extended haplotypes with nasopharyngeal carcinoma in Taiwan
-
COI: 1:CAS:528:DC%2BD38XptlOitLs%3D, PID: 12464650
-
Hildesheim A, Apple RJ, Chen C-J et al (2002) Association of HLA class I and II alleles and extended haplotypes with nasopharyngeal carcinoma in Taiwan. J Natl Cancer Inst 94:1780–1789
-
(2002)
J Natl Cancer Inst
, vol.94
, pp. 1780-1789
-
-
Hildesheim, A.1
Apple, R.J.2
Chen, C.-J.3
-
108
-
-
84861865679
-
High-throughput, high-fidelity HLA genotyping with deep sequencing
-
COI: 1:CAS:528:DC%2BC38Xosleqtbo%3D, PID: 22589303
-
Wang C, Krishnakumar S, Wilhelmy J et al (2012) High-throughput, high-fidelity HLA genotyping with deep sequencing. Proc Natl Acad Sci USA 109:8676–8681. doi:10.1073/pnas.1206614109
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 8676-8681
-
-
Wang, C.1
Krishnakumar, S.2
Wilhelmy, J.3
-
109
-
-
84871400212
-
HLA typing from RNA-Seq sequence reads
-
Boegel S, Löwer M, Schäfer M et al (2013) HLA typing from RNA-Seq sequence reads. Genome Med 4:102. doi:10.1186/gm403
-
(2013)
Genome Med
, vol.4
, pp. 102
-
-
Boegel, S.1
Löwer, M.2
Schäfer, M.3
-
110
-
-
84862964626
-
A cDNA microarray for rapid and economical identification of HLA profiles of individuals. In: IEEE international conference on bioinformatics and biomedical work
-
Zhang GL, Keskin DB, Reinherz EL, Brusic V (2011) A cDNA microarray for rapid and economical identification of HLA profiles of individuals. In: IEEE international conference on bioinformatics and biomedical work, pp 677–679
-
(2011)
pp 677–679
-
-
Zhang, G.L.1
Keskin, D.B.2
Reinherz, E.L.3
Brusic, V.4
-
111
-
-
84896448861
-
A survey of tools for variant analysis of next-generation genome sequencing data
-
PID: 23341494
-
Pabinger S, Dander A, Fischer M et al (2014) A survey of tools for variant analysis of next-generation genome sequencing data. Brief Bioinform 15:256–278. doi:10.1093/bib/bbs086
-
(2014)
Brief Bioinform
, vol.15
, pp. 256-278
-
-
Pabinger, S.1
Dander, A.2
Fischer, M.3
-
112
-
-
84863615191
-
Characterization of HIV-specific CD4+ T cell responses against peptides selected with broad population and pathogen coverage
-
COI: 1:CAS:528:DC%2BC38XhtVarsLvI, PID: 22792193
-
Buggert M, Norström MM, Czarnecki C et al (2012) Characterization of HIV-specific CD4+ T cell responses against peptides selected with broad population and pathogen coverage. PLoS ONE 7:e39874. doi:10.1371/journal.pone.0039874
-
(2012)
PLoS ONE
, vol.7
, pp. e39874
-
-
Buggert, M.1
Norström, M.M.2
Czarnecki, C.3
-
113
-
-
33746166392
-
Predicting population coverage of T-cell epitope-based diagnostics and vaccines
-
Bui H-H, Sidney J, Dinh K et al (2006) Predicting population coverage of T-cell epitope-based diagnostics and vaccines. BMC Bioinform 7:153. doi:10.1186/1471-2105-7-153
-
(2006)
BMC Bioinform
, vol.7
, pp. 153
-
-
Bui, H.-H.1
Sidney, J.2
Dinh, K.3
-
114
-
-
84872769379
-
Derivation of HLA types from shotgun sequence datasets
-
COI: 1:CAS:528:DC%2BC3sXitlSnurw%3D, PID: 23228053
-
Warren RL, Choe G, Freeman DJ et al (2012) Derivation of HLA types from shotgun sequence datasets. Genome Med 4:95. doi:10.1186/gm396
-
(2012)
Genome Med
, vol.4
, pp. 95
-
-
Warren, R.L.1
Choe, G.2
Freeman, D.J.3
-
115
-
-
84879547558
-
HLA haplotyping from RNA-seq data using hierarchical read weighting
-
COI: 1:CAS:528:DC%2BC3sXhtFaku7bL, PID: 23840783
-
Kim HJ, Pourmand N (2013) HLA haplotyping from RNA-seq data using hierarchical read weighting. PLoS ONE 8:e67885. doi:10.1371/journal.pone.0067885
-
(2013)
PLoS ONE
, vol.8
, pp. e67885
-
-
Kim, H.J.1
Pourmand, N.2
-
116
-
-
48449106045
-
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11
-
COI: 1:CAS:528:DC%2BD1cXptlKksL0%3D, PID: 18463140
-
Lundegaard C, Lamberth K, Harndahl M et al (2008) NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res 36:W509–W512. doi:10.1093/nar/gkn202
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W509-W512
-
-
Lundegaard, C.1
Lamberth, K.2
Harndahl, M.3
-
118
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
COI: 1:CAS:528:DC%2BC3sXksFWisLc%3D, PID: 23329690
-
Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. doi:10.1093/molbev/mst010
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
119
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform 5:113. doi:10.1186/1471-2105-5-113
-
(2004)
BMC Bioinform
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
120
-
-
39549095936
-
Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
-
Bui H-H, Sidney J, Li W et al (2007) Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines. BMC Bioinform 8:361. doi:10.1186/1471-2105-8-361
-
(2007)
BMC Bioinform
, vol.8
, pp. 361
-
-
Bui, H.-H.1
Sidney, J.2
Li, W.3
-
121
-
-
84888429223
-
BlockLogo: visualization of peptide and sequence motif conservation
-
PID: 24001880
-
Olsen LR, Kudahl UJ, Simon C et al (2013) BlockLogo: visualization of peptide and sequence motif conservation. J Immunol Methods 400–401:37–44. doi:10.1016/j.jim.2013.08.014
-
(2013)
J Immunol Methods
, vol.400-401
, pp. 37-44
-
-
Olsen, L.R.1
Kudahl, U.J.2
Simon, C.3
-
122
-
-
0031937298
-
The multi-epitope approach for immunotherapy for cancer: identification of several CTL epitopes from various tumor-associated antigens expressed on solid epithelial tumors
-
COI: 1:CAS:528:DyaK1cXhvVyhsLo%3D, PID: 9544234
-
Kawashima I, Hudson SJ, Tsai V et al (1998) The multi-epitope approach for immunotherapy for cancer: identification of several CTL epitopes from various tumor-associated antigens expressed on solid epithelial tumors. Hum Immunol 59:1–14
-
(1998)
Hum Immunol
, vol.59
, pp. 1-14
-
-
Kawashima, I.1
Hudson, S.J.2
Tsai, V.3
-
124
-
-
64149099583
-
DECIPHER: database of chromosomal imbalance and phenotype in humans using ensembl resources
-
COI: 1:CAS:528:DC%2BD1MXmvVahsLk%3D, PID: 19344873
-
Firth HV, Richards SM, Bevan AP et al (2009) DECIPHER: database of chromosomal imbalance and phenotype in humans using ensembl resources. Am J Hum Genet 84:524–533. doi:10.1016/j.ajhg.2009.03.010
-
(2009)
Am J Hum Genet
, vol.84
, pp. 524-533
-
-
Firth, H.V.1
Richards, S.M.2
Bevan, A.P.3
-
125
-
-
79960976768
-
UniProt knowledgebase: a hub of integrated protein data. Database (Oxford) bar009
-
Magrane M (2011) UniProt knowledgebase: a hub of integrated protein data. Database (Oxford) bar009. doi: 10.1093/database/bar009
-
(2011)
doi: 10.1093/database/bar009
-
-
Magrane, M.1
-
126
-
-
18944390491
-
Regulators of apoptosis: suitable targets for immune therapy of cancer
-
COI: 1:CAS:528:DC%2BD2MXjs1OktL4%3D, PID: 15864269
-
Andersen MH, Becker JC, Thor Straten P (2005) Regulators of apoptosis: suitable targets for immune therapy of cancer. Nat Rev Drug Discov 4:399–409. doi:10.1038/nrd1717
-
(2005)
Nat Rev Drug Discov
, vol.4
, pp. 399-409
-
-
Andersen, M.H.1
Becker, J.C.2
Thor Straten, P.3
-
127
-
-
84860851412
-
Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks
-
COI: 1:CAS:528:DC%2BC38XntFaiu70%3D, PID: 22579283
-
Lee MJ, Ye AS, Gardino AK et al (2012) Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks. Cell 149:780–794. doi:10.1016/j.cell.2012.03.031
-
(2012)
Cell
, vol.149
, pp. 780-794
-
-
Lee, M.J.1
Ye, A.S.2
Gardino, A.K.3
-
128
-
-
33845391214
-
Modulation of DNA vaccine-elicited CD8+ T-lymphocyte epitope immunodominance hierarchies
-
COI: 1:CAS:528:DC%2BD28XhtlWksLbO, PID: 17005652
-
Liu J, Ewald BA, Lynch DM et al (2006) Modulation of DNA vaccine-elicited CD8+ T-lymphocyte epitope immunodominance hierarchies. J Virol 80:11991–11997. doi:10.1128/JVI.01348-06
-
(2006)
J Virol
, vol.80
, pp. 11991-11997
-
-
Liu, J.1
Ewald, B.A.2
Lynch, D.M.3
-
129
-
-
0034067122
-
Dendritic cell/peptide cancer vaccines: clinical responsiveness and epitope spreading
-
COI: 1:CAS:528:DC%2BD3cXjvVaqsL4%3D
-
Ranieri E, Kierstead LS, Zarour H et al (2000) Dendritic cell/peptide cancer vaccines: clinical responsiveness and epitope spreading. Immunol Investig 29:121–125
-
(2000)
Immunol Investig
, vol.29
, pp. 121-125
-
-
Ranieri, E.1
Kierstead, L.S.2
Zarour, H.3
-
130
-
-
0029892793
-
Human tumor antigens are ready to fly
-
COI: 1:CAS:528:DyaK28XlsFyht7c%3D, PID: 8781270
-
Henderson RA, Finn OJ (1996) Human tumor antigens are ready to fly. Adv Immunol 62:217–256
-
(1996)
Adv Immunol
, vol.62
, pp. 217-256
-
-
Henderson, R.A.1
Finn, O.J.2
-
131
-
-
33846566408
-
Dual inhibition of ErbB1 (EGFR/HER1) and ErbB2 (HER2/neu)
-
COI: 1:CAS:528:DC%2BD2sXhsVSjsLc%3D, PID: 17208435
-
Reid A, Vidal L, Shaw H, de Bono J (2007) Dual inhibition of ErbB1 (EGFR/HER1) and ErbB2 (HER2/neu). Eur J Cancer 43:481–489. doi:10.1016/j.ejca.2006.11.007
-
(2007)
Eur J Cancer
, vol.43
, pp. 481-489
-
-
Reid, A.1
Vidal, L.2
Shaw, H.3
de Bono, J.4
-
132
-
-
84876515907
-
STRING v9.1: protein–protein interaction networks, with increased coverage and integration
-
COI: 1:CAS:528:DC%2BC38XhvV2ksb3I, PID: 23203871
-
Franceschini A, Szklarczyk D, Frankild S et al (2013) STRING v9.1: protein–protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41:D808–D815. doi:10.1093/nar/gks1094
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
-
133
-
-
34547866682
-
Targeting EGFR and HER-2 with cetuximab- and trastuzumab-mediated immunotherapy in oesophageal squamous cell carcinoma
-
COI: 1:CAS:528:DC%2BD2sXptVWju74%3D, PID: 17622245
-
Kawaguchi Y, Kono K, Mimura K et al (2007) Targeting EGFR and HER-2 with cetuximab- and trastuzumab-mediated immunotherapy in oesophageal squamous cell carcinoma. Br J Cancer 97:494–501. doi:10.1038/sj.bjc.6603885
-
(2007)
Br J Cancer
, vol.97
, pp. 494-501
-
-
Kawaguchi, Y.1
Kono, K.2
Mimura, K.3
-
134
-
-
79251644460
-
HER2: biology, detection, and clinical implications
-
PID: 21204711
-
Gutierrez C, Schiff R (2011) HER2: biology, detection, and clinical implications. Arch Pathol Lab Med 135:55–62. doi:10.1043/2010-0454-RAR.1
-
(2011)
Arch Pathol Lab Med
, vol.135
, pp. 55-62
-
-
Gutierrez, C.1
Schiff, R.2
-
135
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
COI: 1:CAS:528:DC%2BD2MXht1ShtrnO, PID: 16199517
-
Subramanian A, Tamayo P, Mootha VK et al (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102:15545–15550. doi:10.1073/pnas.0506580102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
136
-
-
84874947727
-
The BioGRID interaction database: 2013 update
-
COI: 1:CAS:528:DC%2BC38XhvV2ktrbJ, PID: 23203989
-
Chatr-Aryamontri A, Breitkreutz B-J, Heinicke S et al (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res 41:D816–D823. doi:10.1093/nar/gks1158
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D816-D823
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.-J.2
Heinicke, S.3
-
137
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
COI: 1:CAS:528:DC%2BD3cXhvVGqu74%3D, PID: 10592173
-
Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27–30
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
138
-
-
78651275182
-
Reactome: a database of reactions, pathways and biological processes
-
COI: 1:CAS:528:DC%2BC3sXivF2ltLw%3D, PID: 21067998
-
Croft D, O’Kelly G, Wu G et al (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res 39:D691–D697. doi:10.1093/nar/gkq1018
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D691-D697
-
-
Croft, D.1
O’Kelly, G.2
Wu, G.3
-
139
-
-
77951682769
-
Benchmarking B-cell epitope prediction for the design of peptide-based vaccines: problems and prospects
-
910524,PID: 20368996
-
Caoili SEC (2010) Benchmarking B-cell epitope prediction for the design of peptide-based vaccines: problems and prospects. J Biomed Biotechnol 2010:910524. doi:10.1155/2010/910524
-
(2010)
J Biomed Biotechnol
, vol.2010
-
-
Caoili, S.E.C.1
-
140
-
-
27144449009
-
Monoclonal antibody therapy of cancer
-
COI: 1:CAS:528:DC%2BD2MXpvVyrtr0%3D, PID: 16151408
-
Adams GP, Weiner LM (2005) Monoclonal antibody therapy of cancer. Nat Biotechnol 23:1147–1157. doi:10.1038/nbt1137
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1147-1157
-
-
Adams, G.P.1
Weiner, L.M.2
-
141
-
-
80051720194
-
Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia
-
COI: 1:CAS:528:DC%2BC3MXhtV2lu7nP, PID: 21830940
-
Porter DL, Levine BL, Kalos M et al (2011) Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia. N Engl J Med 365:725–733. doi:10.1056/NEJMoa1103849
-
(2011)
N Engl J Med
, vol.365
, pp. 725-733
-
-
Porter, D.L.1
Levine, B.L.2
Kalos, M.3
-
142
-
-
78149293634
-
Recent advances in B-cell epitope prediction methods
-
PID: 21067544
-
El-Manzalawy Y, Honavar V (2010) Recent advances in B-cell epitope prediction methods. Immunome Res 6(Suppl 2):S2. doi:10.1186/1745-7580-6-S2-S2
-
(2010)
Immunome Res
, vol.6
, pp. S2
-
-
El-Manzalawy, Y.1
Honavar, V.2
-
143
-
-
0034899781
-
Evaluation of methods for the prediction of membrane spanning regions
-
PID: 11448883
-
Möller S, Croning MD, Apweiler R (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17:646–653
-
(2001)
Bioinformatics
, vol.17
, pp. 646-653
-
-
Möller, S.1
Croning, M.D.2
Apweiler, R.3
-
144
-
-
79952980159
-
Molecular profiling of melanoma and the evolution of patient-specific therapy
-
COI: 1:CAS:528:DC%2BC3MXjs1yqsbY%3D, PID: 21421113
-
Gajewski TF (2011) Molecular profiling of melanoma and the evolution of patient-specific therapy. Semin Oncol 38:236–242. doi:10.1053/j.seminoncol.2011.01.004
-
(2011)
Semin Oncol
, vol.38
, pp. 236-242
-
-
Gajewski, T.F.1
-
145
-
-
84866852663
-
Cancer classification using the Immunoscore: a worldwide task force
-
PID: 23034130
-
Galon J, Franck P, Marincola FM et al (2012) Cancer classification using the Immunoscore: a worldwide task force. J Transl Med 10:205. doi:10.1186/1479-5876-10-205
-
(2012)
J Transl Med
, vol.10
, pp. 205
-
-
Galon, J.1
Franck, P.2
Marincola, F.M.3
-
146
-
-
84855225492
-
The immune score as a new possible approach for the classification of cancer
-
PID: 22214470
-
Galon J, Pagès F, Marincola FM et al (2012) The immune score as a new possible approach for the classification of cancer. J Transl Med 10:1. doi:10.1186/1479-5876-10-1
-
(2012)
J Transl Med
, vol.10
, pp. 1
-
-
Galon, J.1
Pagès, F.2
Marincola, F.M.3
-
147
-
-
73349142719
-
In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer
-
PID: 19858404
-
Pagès F, Kirilovsky A, Mlecnik B et al (2009) In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer. J Clin Oncol 27:5944–5951. doi:10.1200/JCO.2008.19.6147
-
(2009)
J Clin Oncol
, vol.27
, pp. 5944-5951
-
-
Pagès, F.1
Kirilovsky, A.2
Mlecnik, B.3
|