SCOPUS 정보 검색 플랫폼

Protein Engineering

Volumn 15, Issue 4, 2002, Pages 287-296

Prediction of proteasome cleavage motifs by neural networks

(5) Keşmir, Can a,b Nussbaum, Alexander K c Schild, Hansjörg c Detours, Vincent d,e Brunak, Søren a

a TECHNICAL UNIVERSITY OF DENMARK (Denmark)

b UTRECHT UNIVERSITY (Netherlands)

c UNIVERSITY OF TÜBINGEN (Germany)

d SANTA FE INSTITUTE (United States)

e LOS ALAMOS NATIONAL LABORATORY (United States)

Author keywords

Artificial neural networks; Cleavage site prediction; MHC Class I epitopes; Proteasome; Protein degradation

Indexed keywords

GAMMA INTERFERON; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; NEF PROTEIN; POLYPEPTIDE; PROTEASOME;

ALGORITHM; ANTIGEN BINDING; ANTIGEN PRESENTATION; ARTICLE; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; NERVE CELL NETWORK; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN MOTIF; SIMULATION;

VERTEBRATA;

EID: 0036096708 PISSN: 02692139 EISSN: None Source Type: Journal
DOI: 10.1093/protein/15.4.287 Document Type: Article

Times cited : (247)

References (56)

1
- 0034723134
- (2000) J. Mol. Biol. , vol.295 , pp. 879-890
- Altuvia, Y.¹ Margalit, H.²

2
- 0033957834
- (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
- Bairoch, A.¹ Apweiler, R.²

3
- 0003396310
- MIT Press, Cambridge, MA
- (2001) Bioinformatics: The Machine Learning Approach, 2nd edn.
- Baldi, P.¹ Brunak, S.²

4
- 0030575777
- (1996) J. Mol. Biol. , vol.263 , pp. 503-510
- Baldi, P.¹ Brunak, S.² Chauvin, Y.³ Krogh, A.⁴

5
- 0014942114
- (1970) Phil. Trans. R. Soc. Lond. B Biol. Sci. , vol.257 , pp. 249-264
- Berger, A.¹ Schechter, I.²

6
- 17344371397
- (1998) Nat. Genet. , vol.18 , pp. 164-167
- Brais, B.¹ Bouchard, J.P.² Xie, Y.G.³ Rochefort, D.L.⁴ Chretien, N.⁵ Tome, F.M.⁶ Lafreniere, R.G.⁷ Rommens, J.M.⁸ Uyama, E.⁹ Nohira, O.¹⁰

7
- 0029902243
- (1996) Proteins , vol.25 , pp. 237-252
- Brunak, S.¹ Engelbrecht, J.²

8
- 0025744474
- (1991) J. Mol. Biol. , vol.220 , pp. 49-65
- Brunak, S.¹ Engelbrecht, J.² Knudsen, S.³

9
- 0031811850
- (1998) Nucleic Acids Res. , vol.26 , pp. 368-371
- Brusic, V.¹ Rudy, G.² Harrison, L.C.³

10
- 0032479162
- (1998) J. Biol. Chem. , vol.273 , pp. 16764-16770
- Cardozo, C.¹ Kohanski, R.A.²

11
- 0028244341
- (1994) Biochemistry , vol.33 , pp. 6483-6489
- Cardozo, C.¹ Vinitsky, A.² Michaud, C.³ Orlowski, M.⁴

12
- 0035806246
- (2001) J. Exp. Med. , vol.193 , pp. 1319-1326
- Chen, W.¹ Norbury, C.C.² Cho, Y.³ Yewdell, J.W.⁴ Bennink, J.R.⁵

13
- 0030886208
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10850-10855
- Craiu, A.¹ Akopian, T.² Goldberg, A.³ Rock, K.L.⁴

14
- 0025900181
- (1991) Cell , vol.66 , pp. 1145-1153
- Del Val, M.¹ Schlicht, H.J.² Ruppert, T.³ Reddehase, M.J.⁴ Koszinowski, U.H.⁵

15
- 0027223877
- (1993) Nature , vol.365 , pp. 262-264
- Driscoll, J.¹ Brown, M.G.² Finley, D.³ Monaco, J.J.⁴

16
- 0034647551
- (2000) J. Biol. Chem. , vol.275 , pp. 21140-21148
- Emmerich, N.P.¹ Nussbaum, A.K.² Stevanovic, S.³ Priemer, M.⁴ Toes, R.E.⁵ Rammensee, H.G.⁶ Schild, H.⁷

17
- 0027214605
- (1993) Nature , vol.365 , pp. 264-267
- Gaczynska, M.¹ Rock, K.L.² Goldberg, A.L.³

18
- 12644284524
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7458-7463
- Goodman, F.R.¹ Mundlos, S.² Muragaki, Y.³ Donnai, D.⁴ Giovannucci-Uzielli, M.L.⁵ Lapi, E.⁶ Majewski, F.⁷ McGaughran, J.⁸ McKeown, C.⁹ Reardon, W.¹⁰

19
- 0030897031
- (1997) Nature , vol.386 , pp. 463-471
- Groll, M.¹ Ditzel, L.² Lowe, J.³ Stock, D.⁴ Bochtler, M.⁵ Bartunik, H.D.⁶ Huber, R.⁷

20
- 0030774890
- (1997) J. Biol. Chem. , vol.272 , pp. 25200-25209
- Heinemeyer, W.¹ Fischer, M.² Krimmer, T.³ Stachon, U.⁴ Wolf, D.H.⁵

21
- 0003979924
- Addison-Wesley, Santa Fe Institute
- (1991) Introduction to the Theory of Neural Computation. Studies in the Sciences of Complexity
- Hertz, J.¹ Krogh, A.² Palmer, R.³

22
- 0033849945
- (2000) Biophys. J. , vol.79 , pp. 1196-1205
- Holzhutter, H.G.¹ Kloetzel, P.M.²

23
- 0345291184
- (1999) J. Mol. Biol. , vol.286 , pp. 1251-1265
- Holzhutter, H.G.¹ Frommel, C.² Kloetzel, P.M.³

24
- 0033525086
- (1999) J. Biol. Chem. , vol.274 , pp. 3363-3371
- Kisselev, A.F.¹ Akopian, T.N.² Woo, K.M.³ Goldberg, A.L.⁴

25
- 0000162341
- (1941) Ann. Math. Stat. , vol.12 , pp. 461-463
- Kolmogorov, A.¹

26
- 0030795968
- (1997) Brain Pathol. , vol.7 , pp. 927-942
- Koshy, B.T.¹ Zoghbi, H.Y.²

27
- 0342545936
- (1999) Eur. Arch. Psychiatry Clin. Neurosci. , vol.249 , pp. 56-63
- Kretzschmar, H.A.¹

28
- 0029162601
- (1995) Eur. J. Immunol. , vol.25 , pp. 2605-2611
- Kuckelkorn, U.¹ Frentzel, S.² Kraft, R.³ Kostka, S.⁴ Groettrup, M.⁵ Kloetzel, P.M.⁶

29
- 0034607546
- (2000) J. Mol. Biol. , vol.298 , pp. 417-429
- Kuttler, C.¹ Nussbaum, A.K.² Dick, T.P.³ Rammensee, H.G.⁴ Schild, H.⁵ Hadeler, K.P.⁶

30
- 0034677151
- (2000) J. Exp. Med. , vol.191 , pp. 239-252
- Lucchiari-Hartz, M.¹ Van Endert, P.M.² Lauvau, G.³ Maier, R.⁴ Meyerhans, A.⁵ Mann, D.⁶ Eichmann, K.⁷ Niedermann, G.⁸

31
- 0016772212
- (1975) Biochim. Biophys. Acta , vol.405 , pp. 442-451
- Matthews, B.W.¹

32
- 0033486008
- (1999) J. Immunol. , vol.163 , pp. 5851-5859
- Mo, X.Y.¹ Cascio, P.² Lemerise, K.³ Goldberg, A.L.⁴ Rock, K.⁵

33
- 0033980648
- (2000) Immunity , vol.12 , pp. 107-117
- Morel, S.¹ Levy, F.² Burlet-Schiltz, O.³ Brasseur, F.⁴ Probst-Kepper, M.⁵ Peitrequin, A.L.⁶ Monsarrat, B.⁷ Van Velthoven, R.⁸ Cerottini, J.C.⁹ Boon, T.¹⁰

34
- 15444351110
- (1997) Cell , vol.89 , pp. 773-779
- Mundlos, S.¹ Otto, F.² Mundlos, C.³ Mulliken, J.B.⁴ Aylsworth, A.S.⁵ Albright, S.⁶ Lindhout, D.⁷ Cole, W.G.⁸ Henn, W.⁹ Knoll, J.H.¹⁰

35
- 0024046665
- (1988) Protein Eng. , vol.2 , pp. 93-100
- Nakai, K.¹ Kidera, A.² Kanehisa, M.³

36
- 0029781734
- (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8572-8577
- Niedermann, G.¹ King, G.² Butz, S.³ Birsner, U.⁴ Grimm, R.⁵ Shabanowitz, J.⁶ Hunt, D.F.⁷ Eichmann, K.⁸

37
- 0030852963
- (1997) J. Exp. Med. , vol.186 , pp. 209-220
- Niedermann, G.¹ Grimm, R.² Geier, E.³ Maurer, M.⁴ Realini, C.⁵ Gartmann, C.⁶ Soll, J.⁷ Omura, S.⁸ Rechsteiner, M.C.⁹ Baumeister, W.¹⁰

38
- 0032514684
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12504-12509
- Nussbaum, A.K.¹ Dick, T.P.² Keilholz, W.³ Schirle, M.⁴ Stevanovic, S.⁵ Dietz, K.⁶ Heinemeyer, W.⁷ Groll, M.⁸ Wolf, D.H.⁹ Huber, R.¹⁰

39
- 0035074032
- (2001) Immunogenetics , vol.53 , pp. 87-94
- Nussbaum, A.K.¹ Kuttler, C.² Hadeler, K.P.³ Rammensee, H.G.⁴ Schild, H.⁵

40
- 0033179885
- (1999) Immunity , vol.11 , pp. 241-251
- Paz, P.¹ Brouwenstijn, N.² Perry, R.³ Shastri, N.⁴

41
- 0023803244
- (1988) J. Mol. Biol. , vol.202 , pp. 865-884
- Qian, N.¹ Sejnowski, T.J.²

42
- 0033388725
- (1999) Immunogenetics , vol.50 , pp. 213-219
- Rammensee, H.¹ Bachmann, J.² Emmerich, N.P.³ Bachor, O.A.⁴ Stevanovic, S.⁵

43
- 0032971227
- (1999) Annu. Rev. Immunol. , vol.17 , pp. 739-779
- Rock, K.L.¹ Goldberg, A.L.²

44
- 0025008168
- (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
- Schneider, T.D.¹ Stephens, R.M.²

45
- 0032483376
- (1998) J. Biol. Chem. , vol.273 , pp. 23062-23071
- Shimbara, N.¹ Ogawa, K.² Hidaka, Y.³ Nakajima, H.⁴ Yamasaki, N.⁵ Niwa, S.⁶ Tanahashi, N.⁷ Tanaka, K.⁸

46
- 0031771008
- (1998) Eur. J. Immunol. , vol.28 , pp. 4029-4036
- Stoltze, L.¹ Dick, T.P.² Deeg, M.³ Pommerl, B.⁴ Rammensee, H.G.⁵ Schild, H.⁶

47
- 5944236047
- (2000) Nat. Immunol. , vol.1 , pp. 413-418
- Stoltze, L.¹ Schirle, M.² Schwarz, G.³ Schroter, C.⁴ Thompson, M.W.⁵ Hersh, L.B.⁶ Kalbacher, H.⁷ Stevanovic, S.⁸ Rammensee, H.G.⁹ Schild, H.¹⁰

48
- 0032555911
- (1998) J. Exp. Med. , vol.188 , pp. 1017-1028
- Theobald, M.¹ Ruppert, T.² Kuckelkorn, U.³ Hernandez, J.⁴ Haussler, A.⁵ Ferreira, E.A.⁶ Liewer, U.⁷ Biggs, J.⁸ Levine, A.J.⁹ Huber, C.¹⁰

49
- 0035796461
- (2001) J. Exp. Med. , vol.194 , pp. 1-12
- Toes, R.E.¹ Nussbaum, A.K.² Degermann, S.³ Schirle, M.⁴ Emmerich, N.P.⁵ Kraft, M.⁶ Laplace, C.⁷ Zwinderman, A.⁸ Dick, T.E.⁹ Muller, J.¹⁰

50
- 0035314002
- (2001) Curr. Opin. Immunol. , vol.13 , pp. 147-153
- Van den Eynde, B.J.¹ Morel, S.²

51
- 0032484298
- (1998) Virology , vol.240 , pp. 158-167
- Van der Most, R.G.¹ Murali-Krishna, K.² Whitton, J.L.³ Oseroff, C.⁴ Alexander, J.⁵ Southwood, S.⁶ Sidney, J.⁷ Chesnut, R.W.⁸ Sette, A.⁹ Ahmed, R.¹⁰

52
- 0034698738
- (2000) J. Exp. Med. , vol.192 , pp. 483-494
- Van Hall, T.¹ Sijts, A.² Camps, M.³ Offringa, R.⁴ Melief, C.⁵ Kloetzel, P.M.⁶ Ossendorp, F.⁷

53
- 0033046472
- (1999) Annu. Rev. Immunol. , vol.17 , pp. 51-88
- Yewdell, J.W.¹ Bennink, J.R.²

54
- 0033456192
- (1999) Immunol. Rev. , vol.172 , pp. 97-108
- Yewdell, J.¹ Anton, L.C.² Bacik, I.³ Schubert, U.⁴ Snyder, H.L.⁵ Bennink, J.R.⁶

55
- 0033551776
- (1999) J. Biol. Chem. , vol.274 , pp. 23396-23404
- Zanusso, G.¹ Petersen, R.B.² Jin, T.³ Jing, Y.⁴ Kanoush, R.⁵ Ferrari, S.⁶ Gambetti, P.⁷ Singh, N.⁸

56
- 0033597852
- (1999) J. Biol. Chem. , vol.274 , pp. 20745-20748
- Zhou, A.¹ Webb, G.² Zhu, X.³ Steiner, D.F.⁴

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.