메뉴 건너뛰기




Volumn 11, Issue 5, 2011, Pages 996-999

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches

Author keywords

Bioinformatics; OMSSA; Protein identification; Search engines; X!Tandem

Indexed keywords

ALGORITHM; ANALYTIC METHOD; ARTICLE; BIOINFORMATICS; INTERNET; MASS SPECTROMETRY; PRIORITY JOURNAL;

EID: 79951750784     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000595     Document Type: Article
Times cited : (306)

References (14)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R., Mann, M., Mass spectrometry-based proteomics. Nature 2003, 422, 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 3
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J., McCormack, A. L., Yates, J. R., III, An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.1    McCormack, A.L.2    Yates III, J.R.3
  • 5
    • 39049184740 scopus 로고    scopus 로고
    • Virtual Expert Mass Spectrometrist v3.0: an integrated tool for proteome analysis
    • Matthiesen, R., Virtual Expert Mass Spectrometrist v3.0: an integrated tool for proteome analysis. Methods Mol. Biol. 2007, 367, 121-138.
    • (2007) Methods Mol. Biol. , vol.367 , pp. 121-138
    • Matthiesen, R.1
  • 6
    • 0037442649 scopus 로고    scopus 로고
    • A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
    • Fenyo, D., Beavis, R. C., A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 2003, 75, 768-774.
    • (2003) Anal. Chem. , vol.75 , pp. 768-774
    • Fenyo, D.1    Beavis, R.C.2
  • 7
    • 34848819400 scopus 로고    scopus 로고
    • Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy
    • Balgley, B. M., Laudeman, T., Yang, L., Song, T., Lee, C. S., Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy. Mol. Cell. Proteomics 2007, 6, 1599-1608.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1599-1608
    • Balgley, B.M.1    Laudeman, T.2    Yang, L.3    Song, T.4    Lee, C.S.5
  • 8
    • 38649114671 scopus 로고    scopus 로고
    • Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies
    • Searle, B. C., Turner, M., Nesvizhskii, A. I., Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies. J. Proteome Res. 2008, 7, 245-253.
    • (2008) J. Proteome Res. , vol.7 , pp. 245-253
    • Searle, B.C.1    Turner, M.2    Nesvizhskii, A.I.3
  • 9
    • 53049093468 scopus 로고    scopus 로고
    • Enhancing peptide identification confidence by combining search methods
    • Alves, G., Wu, W. W., Wang, G., Shen, R. F., Yu, Y. K., Enhancing peptide identification confidence by combining search methods. J. Proteome Res. 2008, 7, 3102-3113.
    • (2008) J. Proteome Res. , vol.7 , pp. 3102-3113
    • Alves, G.1    Wu, W.W.2    Wang, G.3    Shen, R.F.4    Yu, Y.K.5
  • 10
    • 48249129089 scopus 로고    scopus 로고
    • OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine
    • Tharakan, R., Martens, L., Van Eyk, J. E., Graham, D. R., OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. Proteomics 2008, 8, 2376-2378.
    • (2008) Proteomics , vol.8 , pp. 2376-2378
    • Tharakan, R.1    Martens, L.2    Van Eyk, J.E.3    Graham, D.R.4
  • 11
    • 68049100378 scopus 로고    scopus 로고
    • OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results
    • Barsnes, H., Huber, S., Sickmann, A., Eidhammer, I., Martens, L., OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results. Proteomics 2009, 9, 3772-3774.
    • (2009) Proteomics , vol.9 , pp. 3772-3774
    • Barsnes, H.1    Huber, S.2    Sickmann, A.3    Eidhammer, I.4    Martens, L.5
  • 12
    • 77950650434 scopus 로고    scopus 로고
    • XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results
    • Muth, T., Vaudel, M., Barsnes, H., Martens, L., Sickmann, A., XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results. Proteomics 2010, 10, 1522-1524.
    • (2010) Proteomics , vol.10 , pp. 1522-1524
    • Muth, T.1    Vaudel, M.2    Barsnes, H.3    Martens, L.4    Sickmann, A.5
  • 13
    • 23944526367 scopus 로고    scopus 로고
    • PRIDE: the proteomics identifications database
    • Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: the proteomics identifications database. Proteomics 2005, 5, 3537-3545.
    • (2005) Proteomics , vol.5 , pp. 3537-3545
    • Martens, L.1    Hermjakob, H.2    Jones, P.3    Adamski, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.