-
1
-
-
77957237701
-
Proteogenomics to discover the full coding content of genomes: A computational perspective
-
Castellana N, Bafna V, (2010) Proteogenomics to discover the full coding content of genomes: A computational perspective. Journal of Proteomics 73: 2124-2135.
-
(2010)
Journal of Proteomics
, vol.73
, pp. 2124-2135
-
-
Castellana, N.1
Bafna, V.2
-
3
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Research 12: 996-1006.
-
(2002)
Genome Research
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
4
-
-
18444402182
-
The ensembl genome database project
-
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, et al. (2002) The ensembl genome database project. Nucleic Acids Research 30: 38-41.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
-
5
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, et al. (2002) The generic genome browser: A building block for a model organism system database. Genome Research 12: 1599-1610.
-
(2002)
Genome Research
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
-
6
-
-
70349739736
-
The integrated genome browser: free software for distribution and exploration of genome-scale datasets
-
Nicol JW, Helt GA, Blanchard SG, Raja A, Loraine AE, (2009) The integrated genome browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25: 2730-2731.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard, S.G.3
Raja, A.4
Loraine, A.E.5
-
7
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, et al. (2011) Integrative genomics viewer. Nature Biotechnology 29: 24-26.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
-
8
-
-
84863507534
-
Geneious basic: An in-tegrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, et al. (2012) Geneious basic: An in-tegrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-1649.
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
-
9
-
-
25444475024
-
Genome annotation of anopheles gambiae using mass spectrometry-derived data
-
Kalume D, Peri S, Reddy R, Zhong J, Okulate M, et al. (2005) Genome annotation of anopheles gambiae using mass spectrometry-derived data. BMC Genomics 6: 128.
-
(2005)
BMC Genomics
, vol.6
, pp. 128
-
-
Kalume, D.1
Peri, S.2
Reddy, R.3
Zhong, J.4
Okulate, M.5
-
10
-
-
2942547885
-
The distributed annotation system
-
Dowell R, Jokerst R, Day A, Eddy S, Stein L, (2001) The distributed annotation system. BMC Bioinformatics 2: 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.1
Jokerst, R.2
Day, A.3
Eddy, S.4
Stein, L.5
-
11
-
-
79955002352
-
The proteogenomic mapping tool
-
Sanders W, Wang N, Bridges S, Malone B, Dandass Y, et al. (2011) The proteogenomic mapping tool. BMC Bioinformatics 12: 115.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 115
-
-
Sanders, W.1
Wang, N.2
Bridges, S.3
Malone, B.4
Dandass, Y.5
-
12
-
-
84870721324
-
File formats commonly used in mass spectrometry proteomics
-
doi:10.1074/mcp.R112.019695
-
Deutsch EW (2012) File formats commonly used in mass spectrometry proteomics. Molecular & Cellular Proteomics doi:10.1074/mcp.R112.019695.
-
(2012)
Molecular & Cellular Proteomics
-
-
Deutsch, E.W.1
-
13
-
-
54949129419
-
ProteoWizard: open source software for rapid proteomics tools development
-
Kessner D, Chambers M, Burke R, Agus D, Mallick P, (2008) ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics 24: 2534-2536.
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
14
-
-
33646907086
-
Reporting protein identification data - the next generation of guidelines
-
Bradshaw RA, Burlingame AL, Carr S, Aebersold R, (2006) Reporting protein identification data - the next generation of guidelines. Molecular & Cellular Proteomics 5: 787-788.
-
(2006)
Molecular & Cellular Proteomics
, vol.5
, pp. 787-788
-
-
Bradshaw, R.A.1
Burlingame, A.L.2
Carr, S.3
Aebersold, R.4
-
15
-
-
77953016667
-
Estimating the confidence of peptide identifications without decoy databases
-
Renard BY, Timm W, Kirchner M, Steen JAJ, Hamprecht FA, et al. (2010) Estimating the confidence of peptide identifications without decoy databases. Analytical Chemistry 82: 4314-4318.
-
(2010)
Analytical Chemistry
, vol.82
, pp. 4314-4318
-
-
Renard, B.Y.1
Timm, W.2
Kirchner, M.3
Steen, J.A.J.4
Hamprecht, F.A.5
-
16
-
-
0012405865
-
-
Technical Report TR94-17, Department of Computer Science, The University of Arizona
-
Wu S, Manber U (1994) A fast algorithm for multi-pattern searching. Technical Report TR94-17, Department of Computer Science, The University of Arizona.
-
(1994)
A fast algorithm for multi-pattern searching
-
-
Wu, S.1
Manber, U.2
-
17
-
-
70350449457
-
When less can yield more - computational preprocessing of MS/MS spectra for peptide identification
-
Renard BY, Kirchner M, Monigatti F, Ivanov AR, Rappsilber J, et al. (2009) When less can yield more - computational preprocessing of MS/MS spectra for peptide identification. PROTEOMICS 9: 4978-4984.
-
(2009)
PROTEOMICS
, vol.9
, pp. 4978-4984
-
-
Renard, B.Y.1
Kirchner, M.2
Monigatti, F.3
Ivanov, A.R.4
Rappsilber, J.5
|