메뉴 건너뛰기




Volumn 19, Issue PB, 2014, Pages 191-197

RNA editing in plant mitochondria -Connecting RNA target sequences and acting proteins

Author keywords

MORF proteins; Plant mitochondria; PPR proteins; Protein RNA code; RNA editing

Indexed keywords

CYTIDINE; MESSENGER RNA; MITOCHONDRIAL PROTEIN; RNA; RNA, MITOCHONDRIAL; URIDINE; VEGETABLE PROTEIN;

EID: 84914161609     PISSN: 15677249     EISSN: 18728278     Source Type: Journal    
DOI: 10.1016/j.mito.2014.04.005     Document Type: Article
Times cited : (36)

References (94)
  • 1
    • 84887026856 scopus 로고    scopus 로고
    • Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition
    • Ban T., et al. Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition. J. Biol. Chem. 2013, 288:31540-31548.
    • (2013) J. Biol. Chem. , vol.288 , pp. 31540-31548
    • Ban, T.1
  • 2
    • 79956309501 scopus 로고    scopus 로고
    • The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
    • Banks J.A., et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 2011, 332:960-963.
    • (2011) Science , vol.332 , pp. 960-963
    • Banks, J.A.1
  • 3
    • 84899745039 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins in plants
    • Barkan A., Small I. Pentatricopeptide repeat proteins in plants. Ann. Rev. Plant Biol. 2014, 65:1.
    • (2014) Ann. Rev. Plant Biol. , vol.65 , pp. 1
    • Barkan, A.1    Small, I.2
  • 4
    • 84866145891 scopus 로고    scopus 로고
    • A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins
    • Barkan A., et al. A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. PLoS Genet. 2012, 8:e1002910.
    • (2012) PLoS Genet. , vol.8 , pp. e1002910
    • Barkan, A.1
  • 5
    • 84861873504 scopus 로고    scopus 로고
    • RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing
    • Bentolila S., Heller W.P., Sun T., Babina A.M., Friso G., et al. RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:E1453-E1461.
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. E1453-E1461
    • Bentolila, S.1    Heller, W.P.2    Sun, T.3    Babina, A.M.4    Friso, G.5
  • 6
    • 84879678855 scopus 로고    scopus 로고
    • Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing
    • Bentolila S., Oh J., Hanson M.R., Bukowski R. Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing. PLoS Genet. 2013, 9:e1003584.
    • (2013) PLoS Genet. , vol.9 , pp. e1003584
    • Bentolila, S.1    Oh, J.2    Hanson, M.R.3    Bukowski, R.4
  • 7
    • 0028179105 scopus 로고
    • RNA editing of tRNAPhe and tRNACys in mitochondria of Oenothera berteriana is initiated in precursor molecules
    • Binder S., Marchfelder A., Brennicke A. RNA editing of tRNAPhe and tRNACys in mitochondria of Oenothera berteriana is initiated in precursor molecules. Mol. Gen. Genet. 1994, 244:67-74.
    • (1994) Mol. Gen. Genet. , vol.244 , pp. 67-74
    • Binder, S.1    Marchfelder, A.2    Brennicke, A.3
  • 9
    • 0029813034 scopus 로고    scopus 로고
    • In vivo dissection of cis-acting determinants for plastid RNA editing
    • Bock R., Hermann M., Kössel H. In vivo dissection of cis-acting determinants for plastid RNA editing. EMBO J. 1996, 15:5052-5059.
    • (1996) EMBO J. , vol.15 , pp. 5052-5059
    • Bock, R.1    Hermann, M.2    Kössel, H.3
  • 10
    • 37249020936 scopus 로고    scopus 로고
    • Cis- and trans-splicing of group II introns in plant mitochondria
    • Bonen L. Cis- and trans-splicing of group II introns in plant mitochondria. Mitochondrion 2008, 8:26-34.
    • (2008) Mitochondrion , vol.8 , pp. 26-34
    • Bonen, L.1
  • 12
    • 84868139176 scopus 로고    scopus 로고
    • Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids
    • Boussardon C., Salone V., Avon A., Berthomé R., Hammani K., et al. Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids. Plant Cell 2012, 24:3684-3694.
    • (2012) Plant Cell , vol.24 , pp. 3684-3694
    • Boussardon, C.1    Salone, V.2    Avon, A.3    Berthomé, R.4    Hammani, K.5
  • 13
    • 84855899752 scopus 로고    scopus 로고
    • The nucleocytoplasmic conflict, a driving force for the emergence of plant organellar RNA editing
    • Castandet B., Araya A. The nucleocytoplasmic conflict, a driving force for the emergence of plant organellar RNA editing. IUBMB Life 2012, 64:120-125.
    • (2012) IUBMB Life , vol.64 , pp. 120-125
    • Castandet, B.1    Araya, A.2
  • 15
    • 84878781216 scopus 로고    scopus 로고
    • The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing
    • Chateigner-Boutin A.L., Colas des Francs-Small C., Fujii S., Okuda K., Tanz S., Small I. The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing. Plant J. 2013, 74:935-945.
    • (2013) Plant J. , vol.74 , pp. 935-945
    • Chateigner-Boutin, A.L.1    Colas des Francs-Small, C.2    Fujii, S.3    Okuda, K.4    Tanz, S.5    Small, I.6
  • 16
    • 39749142161 scopus 로고    scopus 로고
    • The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    • Chaw S.M., Shih A.C.C., Wang D., Wu Y.W., Liu S.M. The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites. Mol. Biol. Evol. 2008, 25:603-615.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 603-615
    • Chaw, S.M.1    Shih, A.C.C.2    Wang, D.3    Wu, Y.W.4    Liu, S.M.5
  • 17
    • 84897035815 scopus 로고    scopus 로고
    • Surrogate mutants for studying mitochondrially encoded functions
    • Colas des Francs-Small C., Small I. Surrogate mutants for studying mitochondrially encoded functions. Biochimie 2013, 10.1016/j.biochi.2013.08.019.
    • (2013) Biochimie
    • Colas des Francs-Small, C.1    Small, I.2
  • 18
    • 84876572100 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Butomus umbellatus-a member of an early branching lineage of monocotyledons
    • Cuenca A., Petersen G., Seberg O. The complete sequence of the mitochondrial genome of Butomus umbellatus-a member of an early branching lineage of monocotyledons. PLoS One 2013, 8:e61552.
    • (2013) PLoS One , vol.8 , pp. e61552
    • Cuenca, A.1    Petersen, G.2    Seberg, O.3
  • 19
    • 84861392531 scopus 로고    scopus 로고
    • A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome
    • Fang Y., et al. A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome. PLoS One 2012, 7:e37164.
    • (2012) PLoS One , vol.7 , pp. e37164
    • Fang, Y.1
  • 20
    • 0034802513 scopus 로고    scopus 로고
    • Cis recognition elements in plant mitochondrion RNA editing
    • Farré J.-C., Leon G., Jordana X., Araya A. Cis recognition elements in plant mitochondrion RNA editing. Mol. Cell. Biol. 2001, 21:6731-6737.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6731-6737
    • Farré, J.-C.1    Leon, G.2    Jordana, X.3    Araya, A.4
  • 21
    • 84876220942 scopus 로고    scopus 로고
    • Land plant RNA editing or: don't be fooled by plant organellar DNA sequences
    • Springer, Dordrecht, R. Bock, V. Knoop (Eds.)
    • Finster S., Legen J., Qu Y., Schmitz-Linneweber C. Land plant RNA editing or: don't be fooled by plant organellar DNA sequences. Genomics of Chloroplasts and Mitochondria 2012, 293-321. Springer, Dordrecht. R. Bock, V. Knoop (Eds.).
    • (2012) Genomics of Chloroplasts and Mitochondria , pp. 293-321
    • Finster, S.1    Legen, J.2    Qu, Y.3    Schmitz-Linneweber, C.4
  • 22
    • 84891781801 scopus 로고    scopus 로고
    • RBF1, a plant homologue of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S rRNA
    • Fristedt R., Scharff L.B., Clarke C.A., Wang Q., Lin C., Merchant S.S., Bock R. RBF1, a plant homologue of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S rRNA. Plant Physiol. 2014, 164:1-15.
    • (2014) Plant Physiol. , vol.164 , pp. 1-15
    • Fristedt, R.1    Scharff, L.B.2    Clarke, C.A.3    Wang, Q.4    Lin, C.5    Merchant, S.S.6    Bock, R.7
  • 23
    • 79957886185 scopus 로고    scopus 로고
    • The evolution of RNA editing and pentatricopeptide repeat genes
    • Fujii S., Small I. The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol. 2011, 191:37-47.
    • (2011) New Phytol. , vol.191 , pp. 37-47
    • Fujii, S.1    Small, I.2
  • 24
    • 0033592907 scopus 로고    scopus 로고
    • RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
    • Giegé P., Brennicke A. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:15324-15329.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 15324-15329
    • Giegé, P.1    Brennicke, A.2
  • 25
    • 84863513494 scopus 로고    scopus 로고
    • Evolutionary origin of RNA editing
    • Gray M.W. Evolutionary origin of RNA editing. Biochemistry 2012, 51:5235-5242.
    • (2012) Biochemistry , vol.51 , pp. 5235-5242
    • Gray, M.W.1
  • 26
    • 69849093397 scopus 로고    scopus 로고
    • A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii
    • Grewe F., Viehoever P., Weisshaar B., Knoop V. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Res. 2009, 37:5093-5104.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 5093-5104
    • Grewe, F.1    Viehoever, P.2    Weisshaar, B.3    Knoop, V.4
  • 27
    • 79954584259 scopus 로고    scopus 로고
    • A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii
    • Grewe F., Herres S., Viehover P., Polsakiewicz M., Weisshaar B., Knoop V. A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii. Nucleic Acids Res. 2011, 39:2890-2902.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2890-2902
    • Grewe, F.1    Herres, S.2    Viehover, P.3    Polsakiewicz, M.4    Weisshaar, B.5    Knoop, V.6
  • 28
    • 84892473974 scopus 로고    scopus 로고
    • Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions
    • Grimes B.T., et al. Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions. BMC Genomics 2014, 15:31.
    • (2014) BMC Genomics , vol.15 , pp. 31
    • Grimes, B.T.1
  • 29
    • 34047228910 scopus 로고    scopus 로고
    • Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae
    • Groth-Malonek M., Wahrmund U., Polsakiewicz M., Knoop V. Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae. Mol. Biol. Evol. 2007, 24:1068-1074.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1068-1074
    • Groth-Malonek, M.1    Wahrmund, U.2    Polsakiewicz, M.3    Knoop, V.4
  • 30
    • 84914161640 scopus 로고    scopus 로고
    • DNA-binding proteins in plant mitochondria: Implications for transcription
    • Gualberto J.M., Kühn K. DNA-binding proteins in plant mitochondria: Implications for transcription. Mitochondrion 2014, 19:323-328.
    • (2014) Mitochondrion , vol.19 , pp. 323-328
    • Gualberto, J.M.1    Kühn, K.2
  • 31
    • 84901608356 scopus 로고    scopus 로고
    • RNA metabolism in plant mitochondria
    • Hammani K., Giegé P. RNA metabolism in plant mitochondria. Trends Plant Sci 2014, 10.1016/j.tplants.2013.12.008.
    • (2014) Trends Plant Sci
    • Hammani, K.1    Giegé, P.2
  • 32
    • 84885119838 scopus 로고    scopus 로고
    • The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain
    • Härtel B., Zehrmann A., Verbitskiy D., Takenaka M. The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain. RNA Biol. 2013, 10:1543-1548.
    • (2013) RNA Biol. , vol.10 , pp. 1543-1548
    • Härtel, B.1    Zehrmann, A.2    Verbitskiy, D.3    Takenaka, M.4
  • 33
    • 84890952588 scopus 로고    scopus 로고
    • Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains
    • Hayes M.L., Giang K., Berhane B., Mulligan R.M. Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains. J. Biol. Chem 2013, 10.1074/jbc.M113.485755.
    • (2013) J. Biol. Chem
    • Hayes, M.L.1    Giang, K.2    Berhane, B.3    Mulligan, R.M.4
  • 34
    • 79960100341 scopus 로고    scopus 로고
    • Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes
    • Hecht J., Grewe F., Knoop V. Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes. Genome Biol. Evol. 2011, 3:344-358.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 344-358
    • Hecht, J.1    Grewe, F.2    Knoop, V.3
  • 35
    • 17044412539 scopus 로고    scopus 로고
    • Substrate and cofactor requirements for RNA editing of chloroplast transcripts in Arabidopsis in vitro
    • Hegeman C.E., Hayes M.L., Hanson M.R. Substrate and cofactor requirements for RNA editing of chloroplast transcripts in Arabidopsis in vitro. Plant J. 2005, 42:124-132.
    • (2005) Plant J. , vol.42 , pp. 124-132
    • Hegeman, C.E.1    Hayes, M.L.2    Hanson, M.R.3
  • 36
    • 84887919741 scopus 로고    scopus 로고
    • Two DYW subclass PPR proteins are involved in RNA editing of ccmFc and atp9 transcripts in the moss Physcomitrella patens: first complete set of PPR editing factors in plant mitochondria
    • Ichinose M., Sugita C., Yagi Y., Nakamura T., Sugita M. Two DYW subclass PPR proteins are involved in RNA editing of ccmFc and atp9 transcripts in the moss Physcomitrella patens: first complete set of PPR editing factors in plant mitochondria. Plant Cell Physiol. 2013, 54:1907-1916.
    • (2013) Plant Cell Physiol. , vol.54 , pp. 1907-1916
    • Ichinose, M.1    Sugita, C.2    Yagi, Y.3    Nakamura, T.4    Sugita, M.5
  • 37
    • 84890148110 scopus 로고    scopus 로고
    • Structural basis for RNA recognition by a dimeric PPR-protein complex
    • Ke J., Chen R.-Z., Ban T., Zhou X.E., Gu X., et al. Structural basis for RNA recognition by a dimeric PPR-protein complex. Nat. Struct. Mol. Biol. 2013, 20:1377-1382.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 1377-1382
    • Ke, J.1    Chen, R.-Z.2    Ban, T.3    Zhou, X.E.4    Gu, X.5
  • 38
    • 4744343662 scopus 로고    scopus 로고
    • The mitochondrial DNA of plants: peculiarities in phylogenetic perspective
    • Knoop V. The mitochondrial DNA of plants: peculiarities in phylogenetic perspective. Curr. Genet. 2004, 46:123-139.
    • (2004) Curr. Genet. , vol.46 , pp. 123-139
    • Knoop, V.1
  • 39
    • 79951578730 scopus 로고    scopus 로고
    • When you can't trust the DNA: RNA editing changes transcript sequences
    • Knoop V. When you can't trust the DNA: RNA editing changes transcript sequences. Cell. Mol. Life Sci. 2011, 68:567-586.
    • (2011) Cell. Mol. Life Sci. , vol.68 , pp. 567-586
    • Knoop, V.1
  • 40
    • 84876257763 scopus 로고    scopus 로고
    • Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages
    • Knoop V. Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages. J. Syst. Evol. 2013, 51:1-12.
    • (2013) J. Syst. Evol. , vol.51 , pp. 1-12
    • Knoop, V.1
  • 41
    • 77957774121 scopus 로고    scopus 로고
    • DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?
    • Knoop V., Rüdinger M. DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?. FEBS Lett. 2010, 584:4287-4291.
    • (2010) FEBS Lett. , vol.584 , pp. 4287-4291
    • Knoop, V.1    Rüdinger, M.2
  • 42
    • 0034089637 scopus 로고    scopus 로고
    • Molecular and functional properties of highly purified transcriptionally active chromosomes from spinach chloroplasts
    • Krause K., Krupinska K. Molecular and functional properties of highly purified transcriptionally active chromosomes from spinach chloroplasts. Physiol. Plant. 2000, 109:188-195.
    • (2000) Physiol. Plant. , vol.109 , pp. 188-195
    • Krause, K.1    Krupinska, K.2
  • 43
    • 84874293117 scopus 로고    scopus 로고
    • New insights into plastid nucleoid structure and functionality
    • Krupinska K., Melonek J., Krause K. New insights into plastid nucleoid structure and functionality. Planta 2013, 237:653-664.
    • (2013) Planta , vol.237 , pp. 653-664
    • Krupinska, K.1    Melonek, J.2    Krause, K.3
  • 44
    • 84870679344 scopus 로고    scopus 로고
    • Arabidopsis chloroplast RNA binding proteins CP31A and CP29A define large, overlapping transcript pools and confer cold stress tolerance by influencing multiple RNA processing steps in chloroplast
    • Kupsch C., Ruwe H., Gusewski S., Tillich M., Small I., Schmitz-Linneweber C. Arabidopsis chloroplast RNA binding proteins CP31A and CP29A define large, overlapping transcript pools and confer cold stress tolerance by influencing multiple RNA processing steps in chloroplast. Plant Cell 2012, 40:4266-4280.
    • (2012) Plant Cell , vol.40 , pp. 4266-4280
    • Kupsch, C.1    Ruwe, H.2    Gusewski, S.3    Tillich, M.4    Small, I.5    Schmitz-Linneweber, C.6
  • 45
    • 84872537549 scopus 로고    scopus 로고
    • PREPACT 2.0: predicting C-to-U and U-to-CRNA editing in organelle genome sequences with multiple references and curated RNA editing annotation
    • Lenz H., Knoop V. PREPACT 2.0: predicting C-to-U and U-to-CRNA editing in organelle genome sequences with multiple references and curated RNA editing annotation. Bioinf. Biol. Insights 2013, 7:1-19.
    • (2013) Bioinf. Biol. Insights , vol.7 , pp. 1-19
    • Lenz, H.1    Knoop, V.2
  • 46
    • 4043172772 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
    • Lurin C., Andrés C., Aubourg S., Bellaoui M., Bitton F., et al. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 2004, 16:2089-2103.
    • (2004) Plant Cell , vol.16 , pp. 2089-2103
    • Lurin, C.1    Andrés, C.2    Aubourg, S.3    Bellaoui, M.4    Bitton, F.5
  • 47
    • 0030043061 scopus 로고    scopus 로고
    • RNA editing is required for efficient excision of tRNAPhe from precursors in plant mitochondria
    • Marchfelder A., Brennicke A., Binder S. RNA editing is required for efficient excision of tRNAPhe from precursors in plant mitochondria. J. Biol. Chem. 1996, 271:1898-1903.
    • (1996) J. Biol. Chem. , vol.271 , pp. 1898-1903
    • Marchfelder, A.1    Brennicke, A.2    Binder, S.3
  • 48
    • 67849095411 scopus 로고    scopus 로고
    • The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and userdefined alignments
    • Mower J.P. The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and userdefined alignments. Nucleic Acids Res. 2009, 37:253-259.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 253-259
    • Mower, J.P.1
  • 49
    • 25844481583 scopus 로고    scopus 로고
    • An in vitro RNA editing system from cauliflower mitochondria: editing site recognition can vary between different plant species
    • Neuwirt J., Takenaka M., van der Merwe J.A., Brennicke A. An in vitro RNA editing system from cauliflower mitochondria: editing site recognition can vary between different plant species. RNA 2005, 11:1563-1570.
    • (2005) RNA , vol.11 , pp. 1563-1570
    • Neuwirt, J.1    Takenaka, M.2    van der Merwe, J.A.3    Brennicke, A.4
  • 50
    • 84878420758 scopus 로고    scopus 로고
    • The Norway spruce genome sequence and conifer genome evolution
    • Nystedt B., et al. The Norway spruce genome sequence and conifer genome evolution. Nature 2013, 497:579-584.
    • (2013) Nature , vol.497 , pp. 579-584
    • Nystedt, B.1
  • 51
    • 44649133995 scopus 로고    scopus 로고
    • On the expansion of the pentatricopeptide repeat gene family in plants
    • O'Toole N., et al. On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 2008, 25:1120-1128.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1120-1128
    • O'Toole, N.1
  • 52
    • 34249938871 scopus 로고    scopus 로고
    • Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing
    • Okuda K., Myouga F., Motohashi R., Shinozaki K., Shikanai T. Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:8178-8183.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 8178-8183
    • Okuda, K.1    Myouga, F.2    Motohashi, R.3    Shinozaki, K.4    Shikanai, T.5
  • 53
    • 62549149035 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts
    • Okuda K., et al. Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell 2009, 21:146-156.
    • (2009) Plant Cell , vol.21 , pp. 146-156
    • Okuda, K.1
  • 54
    • 77955812141 scopus 로고    scopus 로고
    • Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing
    • Picardi E., Horner D.S., Chiara M., Schiavon R., Valle G., Pesole G. Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing. Nucleic Acids Res. 2010, 38:4755-4767.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4755-4767
    • Picardi, E.1    Horner, D.S.2    Chiara, M.3    Schiavon, R.4    Valle, G.5    Pesole, G.6
  • 55
    • 84890824581 scopus 로고    scopus 로고
    • Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
    • Rice D.W., et al. Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella. Science 2013, 342:1468-1473.
    • (2013) Science , vol.342 , pp. 1468-1473
    • Rice, D.W.1
  • 56
    • 84876144707 scopus 로고    scopus 로고
    • The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
    • Richardson A.O., Rice D.W., Young G.J., Alverson A.J., Palmer J.D. The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. BMC Biol. 2013, 11:29.
    • (2013) BMC Biol. , vol.11 , pp. 29
    • Richardson, A.O.1    Rice, D.W.2    Young, G.J.3    Alverson, A.J.4    Palmer, J.D.5
  • 57
    • 65349120245 scopus 로고    scopus 로고
    • RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal
    • Rüdinger M., Funk H.T., Rensing S.A., Maier U.G., Knoop V. RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol. Gen. Genomics. 2009, 281:473-481.
    • (2009) Mol. Gen. Genomics. , vol.281 , pp. 473-481
    • Rüdinger, M.1    Funk, H.T.2    Rensing, S.A.3    Maier, U.G.4    Knoop, V.5
  • 58
    • 79960242987 scopus 로고    scopus 로고
    • Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica
    • Rüdinger M., Szövényi P., Rensing S.A., Knoop V. Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica. Plant J. 2011, 67:370-380.
    • (2011) Plant J. , vol.67 , pp. 370-380
    • Rüdinger, M.1    Szövényi, P.2    Rensing, S.A.3    Knoop, V.4
  • 59
    • 84860147226 scopus 로고    scopus 로고
    • Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?
    • Ruwe H., Schmitz-Linneweber C. Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?. Nucleic Acids Res. 2012, 40:3106-3116.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3106-3116
    • Ruwe, H.1    Schmitz-Linneweber, C.2
  • 60
    • 77957692936 scopus 로고    scopus 로고
    • Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes
    • Salmans M.L., Chaw S.M., Lin C.P., Shih A.C.C., Wu Y.W., Mulligan R.M. Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes. Curr. Genet. 2010, 56:439-446.
    • (2010) Curr. Genet. , vol.56 , pp. 439-446
    • Salmans, M.L.1    Chaw, S.M.2    Lin, C.P.3    Shih, A.C.C.4    Wu, Y.W.5    Mulligan, R.M.6
  • 61
    • 34548133226 scopus 로고    scopus 로고
    • A hypothesis on the identification of the editing enzyme in plant organelles
    • Salone V., Rüdinger M., Polsakiewicz M., Hoffmann B., Groth-Malonek M., et al. A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Lett. 2007, 581:4132-4138.
    • (2007) FEBS Lett. , vol.581 , pp. 4132-4138
    • Salone, V.1    Rüdinger, M.2    Polsakiewicz, M.3    Hoffmann, B.4    Groth-Malonek, M.5
  • 62
    • 84929517488 scopus 로고    scopus 로고
    • A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes
    • Schallenberg-Rüdinger M., Lenz H., Polsakiewicz M., Gott J.M., Knoop V. A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes. RNA Biol. 2013, 10:1549-1556.
    • (2013) RNA Biol. , vol.10 , pp. 1549-1556
    • Schallenberg-Rüdinger, M.1    Lenz, H.2    Polsakiewicz, M.3    Gott, J.M.4    Knoop, V.5
  • 63
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: a socket set for organelle gene expression
    • Schmitz-Linneweber C., Small I. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 2008, 13:663-670.
    • (2008) Trends Plant Sci. , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 64
    • 0026334338 scopus 로고
    • RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxI and rps3 mRNAs of Oenothera
    • Schuster W., Brennicke A. RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxI and rps3 mRNAs of Oenothera. Nucleic Acids Res. 1991, 19:6923-6928.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6923-6928
    • Schuster, W.1    Brennicke, A.2
  • 66
    • 33645074681 scopus 로고    scopus 로고
    • RNA editing in plant organelles: machinery, physiological function and evolution
    • Shikanai T. RNA editing in plant organelles: machinery, physiological function and evolution. Cell. Mol. Life Sci. 2006, 63:689-708.
    • (2006) Cell. Mol. Life Sci. , vol.63 , pp. 689-708
    • Shikanai, T.1
  • 67
    • 84885171267 scopus 로고    scopus 로고
    • Why do plants edit RNA in plant organelles?
    • Springer, Verlag Berlin Heidelberg, C.E. Bullerwell (Ed.)
    • Shikanai T. Why do plants edit RNA in plant organelles?. Organelle Genetics: Evolution of Organelle Genomes and Gene Expression 2012, 381-397. Springer, Verlag Berlin Heidelberg. C.E. Bullerwell (Ed.).
    • (2012) Organelle Genetics: Evolution of Organelle Genomes and Gene Expression , pp. 381-397
    • Shikanai, T.1
  • 68
    • 84885171179 scopus 로고    scopus 로고
    • Function of PPR proteins in plastid gene expression
    • Shikanai T., Fujii S. Function of PPR proteins in plastid gene expression. RNA Biol. 2013, 10:1263-1273.
    • (2013) RNA Biol. , vol.10 , pp. 1263-1273
    • Shikanai, T.1    Fujii, S.2
  • 69
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif-a TPR-related motif prevalent in plant organellar proteins
    • Small I., Peeters N. The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci. 2000, 25:46-47.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 46-47
    • Small, I.1    Peeters, N.2
  • 70
    • 84885110105 scopus 로고    scopus 로고
    • Architecture of the PPR gene family in the moss Physcomitrella patens
    • Sugita M., et al. Architecture of the PPR gene family in the moss Physcomitrella patens. RNA Biol. 2013, 10:1439-1445.
    • (2013) RNA Biol. , vol.10 , pp. 1439-1445
    • Sugita, M.1
  • 71
    • 84875265277 scopus 로고    scopus 로고
    • An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize
    • Sun T., Germain A., Giloteaux L., Hammani K., Barkan A., et al. An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:E1169-E1178.
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. E1169-E1178
    • Sun, T.1    Germain, A.2    Giloteaux, L.3    Hammani, K.4    Barkan, A.5
  • 72
    • 84898761685 scopus 로고    scopus 로고
    • How complex are the editosomes in plant organelles?
    • (in press)
    • Takenaka M. How complex are the editosomes in plant organelles?. Mol. Plant 2014, (in press).
    • (2014) Mol. Plant
    • Takenaka, M.1
  • 73
    • 0346850864 scopus 로고    scopus 로고
    • In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase
    • Takenaka M., Brennicke A. In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase. J. Biol. Chem. 2003, 278:47526-47533.
    • (2003) J. Biol. Chem. , vol.278 , pp. 47526-47533
    • Takenaka, M.1    Brennicke, A.2
  • 74
    • 3442882802 scopus 로고    scopus 로고
    • Complex cis-elements determine an RNA editing site in pea mitochondria
    • Takenaka M., Neuwirt J., Brennicke A. Complex cis-elements determine an RNA editing site in pea mitochondria. Nucleic Acids Res. 2004, 32:4137-4144.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4137-4144
    • Takenaka, M.1    Neuwirt, J.2    Brennicke, A.3
  • 77
    • 84878784240 scopus 로고    scopus 로고
    • Improved computational target site prediction for pentatricopeptide repeat RNA editing factors
    • Takenaka M., Zehrmann A., Brennicke A., Graichen K. Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS One 2013, 8:e65343.
    • (2013) PLoS One , vol.8 , pp. e65343
    • Takenaka, M.1    Zehrmann, A.2    Brennicke, A.3    Graichen, K.4
  • 79
    • 65249117747 scopus 로고    scopus 로고
    • Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs
    • Tillich M., Hardel S.L., Kupsch C., Armbruster U., Delannoy E., et al. Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs. Proc. Natl. Acad. Sci. U. S. A. 2009, 10:6002-6007.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.10 , pp. 6002-6007
    • Tillich, M.1    Hardel, S.L.2    Kupsch, C.3    Armbruster, U.4    Delannoy, E.5
  • 82
    • 77954893228 scopus 로고    scopus 로고
    • The DYW domain in the MEF11 RNA editing protein seems to be involved in specific RNA binding rather than in the enzymatic reaction
    • Verbitskiy D., Zehrmann A., Brennicke A., Takenaka M. The DYW domain in the MEF11 RNA editing protein seems to be involved in specific RNA binding rather than in the enzymatic reaction. Plant Signal. Behav. 2010, 5:558-560.
    • (2010) Plant Signal. Behav. , vol.5 , pp. 558-560
    • Verbitskiy, D.1    Zehrmann, A.2    Brennicke, A.3    Takenaka, M.4
  • 83
    • 84868323065 scopus 로고    scopus 로고
    • Two related RNA editing proteins target the same sites in mitochondria of Arabidopsis thaliana
    • Verbitskiy D., Zehrmann A., Härtel B., Brennicke A., Takenaka M. Two related RNA editing proteins target the same sites in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 2012, 287:38064-38072.
    • (2012) J. Biol. Chem. , vol.287 , pp. 38064-38072
    • Verbitskiy, D.1    Zehrmann, A.2    Härtel, B.3    Brennicke, A.4    Takenaka, M.5
  • 85
    • 84867137384 scopus 로고    scopus 로고
    • The mitochondrial genome of an aquatic plant, Spirodela polyrhiza
    • Wang W., Wu Y., Messing J. The mitochondrial genome of an aquatic plant, Spirodela polyrhiza. PLoS One 2012, 7:e46747.
    • (2012) PLoS One , vol.7 , pp. e46747
    • Wang, W.1    Wu, Y.2    Messing, J.3
  • 86
    • 0025864763 scopus 로고
    • Trans-splicing in Oenothera mitochondria: nad1 mRNAs are edited in exon and trans splicing group II intron sequences
    • Wissinger B., Schuster W., Brennicke A. Trans-splicing in Oenothera mitochondria: nad1 mRNAs are edited in exon and trans splicing group II intron sequences. Cell 1991, 65:473-482.
    • (1991) Cell , vol.65 , pp. 473-482
    • Wissinger, B.1    Schuster, W.2    Brennicke, A.3
  • 87
    • 84874588115 scopus 로고    scopus 로고
    • Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants
    • Yagi Y., Hayashi S., Kobayashi K., Hirayama T., Nakamura T. Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants. PLoS One 2013, 8:e57286.
    • (2013) PLoS One , vol.8 , pp. e57286
    • Yagi, Y.1    Hayashi, S.2    Kobayashi, K.3    Hirayama, T.4    Nakamura, T.5
  • 88
    • 84929517201 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins involved in plant organellar RNA editing
    • Yagi Y., et al. Pentatricopeptide repeat proteins involved in plant organellar RNA editing. RNA Biol. 2013, 10:1419-1425.
    • (2013) RNA Biol. , vol.10 , pp. 1419-1425
    • Yagi, Y.1
  • 89
    • 84901620558 scopus 로고    scopus 로고
    • The potential for manipulating RNA with pentatricopeptide repeat proteins
    • Yagi Y., Nakamura T., Small I. The potential for manipulating RNA with pentatricopeptide repeat proteins. Plant J. 2014, 10.1111/tpj.12377.
    • (2014) Plant J.
    • Yagi, Y.1    Nakamura, T.2    Small, I.3
  • 90
    • 84889567382 scopus 로고    scopus 로고
    • Javascript:;Structural basis for the modular recognition of single-stranded RNA by PPR proteins
    • Yin P., Li Q., Yan C., Liu Y., Liu J., et al. javascript:;Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature 2013, 504:168-171.
    • (2013) Nature , vol.504 , pp. 168-171
    • Yin, P.1    Li, Q.2    Yan, C.3    Liu, Y.4    Liu, J.5
  • 91
    • 77957167782 scopus 로고    scopus 로고
    • RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain
    • Zehrmann A., Verbitskiy D., Härtel B., Brennicke A., Takenaka M. RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain. FEBS Lett. 2010, 584:4181-4186.
    • (2010) FEBS Lett. , vol.584 , pp. 4181-4186
    • Zehrmann, A.1    Verbitskiy, D.2    Härtel, B.3    Brennicke, A.4    Takenaka, M.5
  • 92
    • 85011940618 scopus 로고    scopus 로고
    • PPR proteins network as site-specific RNA editing factors in plant organelles
    • Zehrmann A., Verbitskiy D., Härtel B., Brennicke A., Takenaka M. PPR proteins network as site-specific RNA editing factors in plant organelles. RNA Biol. 2011, 8:67-70.
    • (2011) RNA Biol. , vol.8 , pp. 67-70
    • Zehrmann, A.1    Verbitskiy, D.2    Härtel, B.3    Brennicke, A.4    Takenaka, M.5
  • 93
    • 84856082699 scopus 로고    scopus 로고
    • The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes
    • Zhang T., Fang Y., Wang X., Deng X., Zhang X., Hu S., Yu J. The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes. PLoS One 2012, 7:e30531.
    • (2012) PLoS One , vol.7 , pp. e30531
    • Zhang, T.1    Fang, Y.2    Wang, X.3    Deng, X.4    Zhang, X.5    Hu, S.6    Yu, J.7
  • 94
    • 84893451205 scopus 로고    scopus 로고
    • Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing
    • Zhang F., Tang W., Hedtke B., Zhong L., Liu L., et al. Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing. Proc. Natl. Acad. Sci. U. S. A 2014, 10.1073/pnas.1316183111.
    • (2014) Proc. Natl. Acad. Sci. U. S. A
    • Zhang, F.1    Tang, W.2    Hedtke, B.3    Zhong, L.4    Liu, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.