-
1
-
-
0033367329
-
Mitochondrial genome evolution and the origin of eukaryotes
-
Lang BF, Gray MW, Burger G, (1999) Mitochondrial genome evolution and the origin of eukaryotes. Annu Rev Genet 33: 351-397.
-
(1999)
Annu Rev Genet
, vol.33
, pp. 351-397
-
-
Lang, B.F.1
Gray, M.W.2
Burger, G.3
-
2
-
-
67349286953
-
The complete mitochondrial genome sequence of the hornwort Megaceros aenigmaticus shows a mixed mode of conservative yet dynamic evolution in early land plant mitochondrial genomes
-
Li L, Wang B, Liu Y, Qiu YL, (2009) The complete mitochondrial genome sequence of the hornwort Megaceros aenigmaticus shows a mixed mode of conservative yet dynamic evolution in early land plant mitochondrial genomes. J Mol Evol 68: 665-678.
-
(2009)
J Mol Evol
, vol.68
, pp. 665-678
-
-
Li, L.1
Wang, B.2
Liu, Y.3
Qiu, Y.L.4
-
3
-
-
71149092653
-
The complete mitochondrial genome sequence of the liverwort Pleurozia purpurea reveals extremely conservative mitochondrial genome evolution in liverworts
-
Wang B, Xue J, Li L, Liu Y, Qiu YL, (2009) The complete mitochondrial genome sequence of the liverwort Pleurozia purpurea reveals extremely conservative mitochondrial genome evolution in liverworts. Curr Genet 55: 601-609.
-
(2009)
Curr Genet
, vol.55
, pp. 601-609
-
-
Wang, B.1
Xue, J.2
Li, L.3
Liu, Y.4
Qiu, Y.L.5
-
4
-
-
0027213389
-
The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants
-
Brennicke A, Grohmann L, Hiesel R, Knoop V, Schuster W, (1993) The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants. FEBS Lett 325: 140-145.
-
(1993)
FEBS Lett
, vol.325
, pp. 140-145
-
-
Brennicke, A.1
Grohmann, L.2
Hiesel, R.3
Knoop, V.4
Schuster, W.5
-
5
-
-
0038000616
-
Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms
-
Cummings MP, Nugent JM, Olmstead RG, Palmer JD, (2003) Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms. Curr Genet 43: 131-138.
-
(2003)
Curr Genet
, vol.43
, pp. 131-138
-
-
Cummings, M.P.1
Nugent, J.M.2
Olmstead, R.G.3
Palmer, J.D.4
-
6
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe KH, Li WH, Sharp PM, (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A 84: 9054-9058.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
7
-
-
37249058160
-
Angiosperm mitochondrial genomes and mutations
-
Kubo T, Newton KJ, (2008) Angiosperm mitochondrial genomes and mutations. Mitochondrion 8: 5-14.
-
(2008)
Mitochondrion
, vol.8
, pp. 5-14
-
-
Kubo, T.1
Newton, K.J.2
-
8
-
-
43049083397
-
Do recent findings in plant mitochondrial molecular and population genetics have implications for the study of gynodioecy and cytonuclear conflict?
-
McCauley DE, Olson MS, (2008) Do recent findings in plant mitochondrial molecular and population genetics have implications for the study of gynodioecy and cytonuclear conflict? Evolution 62: 1013-1025.
-
(2008)
Evolution
, vol.62
, pp. 1013-1025
-
-
McCauley, D.E.1
Olson, M.S.2
-
9
-
-
0025932759
-
The group IIB intron from the green alga Scenedesmus obliquus mitochondrion: molecular characterization of the in vitro splicing products
-
Winkler M, Kuck U, (1991) The group IIB intron from the green alga Scenedesmus obliquus mitochondrion: molecular characterization of the in vitro splicing products. Curr Genet 20: 495-502.
-
(1991)
Curr Genet
, vol.20
, pp. 495-502
-
-
Winkler, M.1
Kuck, U.2
-
10
-
-
0027972519
-
Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta
-
Hiesel R, Combettes B, Brennicke A, (1994) Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta. Proc Natl Acad Sci U S A 91: 629-633.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 629-633
-
-
Hiesel, R.1
Combettes, B.2
Brennicke, A.3
-
11
-
-
0033592907
-
RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
-
Giege P, Brennicke A, (1999) RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc Natl Acad Sci U S A 96: 15324-15329.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 15324-15329
-
-
Giege, P.1
Brennicke, A.2
-
12
-
-
0034691074
-
Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates
-
Palmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, et al. (2000) Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. Proc Natl Acad Sci U S A 97: 6960-6966.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6960-6966
-
-
Palmer, J.D.1
Adams, K.L.2
Cho, Y.3
Parkinson, C.L.4
Qiu, Y.L.5
-
13
-
-
0032740766
-
The mitochondrial genome of Arabidopsis is composed of both native and immigrant information
-
Marienfeld J, Unseld M, Brennicke A, (1999) The mitochondrial genome of Arabidopsis is composed of both native and immigrant information. Trends Plant Sci 4: 495-502.
-
(1999)
Trends Plant Sci
, vol.4
, pp. 495-502
-
-
Marienfeld, J.1
Unseld, M.2
Brennicke, A.3
-
14
-
-
0019441235
-
The mitochondrial genome is large and variable in a family of plants (cucurbitaceae)
-
Ward BL, Anderson RS, Bendich AJ, (1981) The mitochondrial genome is large and variable in a family of plants (cucurbitaceae). Cell 25: 793-803.
-
(1981)
Cell
, vol.25
, pp. 793-803
-
-
Ward, B.L.1
Anderson, R.S.2
Bendich, A.J.3
-
15
-
-
66249138826
-
Proteomic analysis of the development and germination of date palm (Phoenix dactylifera L.) zygotic embryos
-
Sghaier-Hammami B, Valledor L, Drira N, Jorrin-Novo JV, (2009) Proteomic analysis of the development and germination of date palm (Phoenix dactylifera L.) zygotic embryos. Proteomics 9: 2543-2554.
-
(2009)
Proteomics
, vol.9
, pp. 2543-2554
-
-
Sghaier-Hammami, B.1
Valledor, L.2
Drira, N.3
Jorrin-Novo, J.V.4
-
16
-
-
77958535422
-
Date palm
-
IS A.-M
-
IS A-M, (1996) Date palm. Arabian Global Encyclopedia 7: 182-187.
-
(1996)
Arabian Global Encyclopedia
, vol.7
, pp. 182-187
-
-
-
17
-
-
79958165589
-
De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
-
Al-Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, et al. (2011) De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nat Biotechnol 29: 521-527.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 521-527
-
-
Al-Dous, E.K.1
George, B.2
Al-Mahmoud, M.E.3
Al-Jaber, M.Y.4
Wang, H.5
-
18
-
-
77958527485
-
The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.)
-
Yang M, Zhang X, Liu G, Yin Y, Chen K, et al. (2010) The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.). PLoS One 5: e12762.
-
(2010)
PLoS One
, vol.5
-
-
Yang, M.1
Zhang, X.2
Liu, G.3
Yin, Y.4
Chen, K.5
-
19
-
-
80051930449
-
Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber
-
Alverson AJ, Rice DW, Dickinson S, Barry K, Palmer JD, (2011) Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber. Plant Cell 23: 2499-2513.
-
(2011)
Plant Cell
, vol.23
, pp. 2499-2513
-
-
Alverson, A.J.1
Rice, D.W.2
Dickinson, S.3
Barry, K.4
Palmer, J.D.5
-
20
-
-
34548410837
-
Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
-
Wang D, Wu YW, Shih AC, Wu CS, Wang YN, et al. (2007) Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA. Mol Biol Evol 24: 2040-2048.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2040-2048
-
-
Wang, D.1
Wu, Y.W.2
Shih, A.C.3
Wu, C.S.4
Wang, Y.N.5
-
21
-
-
0030266747
-
Regulation of gene expression in plant mitochondria
-
Binder S, Marchfelder A, Brennicke A, (1996) Regulation of gene expression in plant mitochondria. Plant Mol Biol 32: 303-314.
-
(1996)
Plant Mol Biol
, vol.32
, pp. 303-314
-
-
Binder, S.1
Marchfelder, A.2
Brennicke, A.3
-
22
-
-
0028206048
-
Function and structure relationships in DNA polymerases
-
Joyce CM, Steitz TA, (1994) Function and structure relationships in DNA polymerases. Annu Rev Biochem 63: 777-822.
-
(1994)
Annu Rev Biochem
, vol.63
, pp. 777-822
-
-
Joyce, C.M.1
Steitz, T.A.2
-
23
-
-
85003342377
-
Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus
-
Ong HC, Palmer JD, (2006) Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus. BMC Evol Biol 6: 55.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 55
-
-
Ong, H.C.1
Palmer, J.D.2
-
24
-
-
0029822746
-
Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals
-
Kadowaki K, Kubo N, Ozawa K, Hirai A, (1996) Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals. EMBO J 15: 6652-6661.
-
(1996)
EMBO J
, vol.15
, pp. 6652-6661
-
-
Kadowaki, K.1
Kubo, N.2
Ozawa, K.3
Hirai, A.4
-
25
-
-
73449119982
-
Ribosomal protein L10 is encoded in the mitochondrial genome of many land plants and green algae
-
Mower JP, Bonen L, (2009) Ribosomal protein L10 is encoded in the mitochondrial genome of many land plants and green algae. BMC Evol Biol 9: 265.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 265
-
-
Mower, J.P.1
Bonen, L.2
-
26
-
-
77951922008
-
Discovery of the rpl10 gene in diverse plant mitochondrial genomes and its probable replacement by the nuclear gene for chloroplast RPL10 in two lineages of angiosperms
-
Kubo N, Arimura S, (2010) Discovery of the rpl10 gene in diverse plant mitochondrial genomes and its probable replacement by the nuclear gene for chloroplast RPL10 in two lineages of angiosperms. DNA Res 17: 1-9.
-
(2010)
DNA Res
, vol.17
, pp. 1-9
-
-
Kubo, N.1
Arimura, S.2
-
27
-
-
0000678077
-
Conservation of ribosomal RNA gene arrangement in the mitochondrial DNA of angiosperms
-
Huh TY, Gray MW, (1982) Conservation of ribosomal RNA gene arrangement in the mitochondrial DNA of angiosperms. Plant Molecular Biology 1: 245-249.
-
(1982)
Plant Molecular Biology
, vol.1
, pp. 245-249
-
-
Huh, T.Y.1
Gray, M.W.2
-
28
-
-
33847650857
-
The discriminatory transfer routes of tRNA genes among organellar and nuclear genomes in flowering plants: a genome-wide investigation of indica rice
-
Tian X, Zheng J, Hu S, Yu J, (2007) The discriminatory transfer routes of tRNA genes among organellar and nuclear genomes in flowering plants: a genome-wide investigation of indica rice. J Mol Evol 64: 299-307.
-
(2007)
J Mol Evol
, vol.64
, pp. 299-307
-
-
Tian, X.1
Zheng, J.2
Hu, S.3
Yu, J.4
-
29
-
-
0019984101
-
Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common
-
Stern DB, Lonsdale DM, (1982) Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common. Nature 299: 698-702.
-
(1982)
Nature
, vol.299
, pp. 698-702
-
-
Stern, D.B.1
Lonsdale, D.M.2
-
30
-
-
0021362098
-
Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants
-
Stern DB, Palmer JD, (1984) Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants. Proc Natl Acad Sci U S A 81: 1946-1950.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 1946-1950
-
-
Stern, D.B.1
Palmer, J.D.2
-
31
-
-
77952837838
-
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
-
Alverson AJ, Wei X, Rice DW, Stern DB, Barry K, et al. (2010) Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae). Mol Biol Evol 27: 1436-1448.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1436-1448
-
-
Alverson, A.J.1
Wei, X.2
Rice, D.W.3
Stern, D.B.4
Barry, K.5
-
32
-
-
0024419064
-
RNA editing in plant mitochondria
-
Covello PS, Gray MW, (1989) RNA editing in plant mitochondria. Nature 341: 662-666.
-
(1989)
Nature
, vol.341
, pp. 662-666
-
-
Covello, P.S.1
Gray, M.W.2
-
33
-
-
0024414676
-
RNA editing in wheat mitochondria results in the conservation of protein sequences
-
Gualberto JM, Lamattina L, Bonnard G, Weil JH, Grienenberger JM, (1989) RNA editing in wheat mitochondria results in the conservation of protein sequences. Nature 341: 660-662.
-
(1989)
Nature
, vol.341
, pp. 660-662
-
-
Gualberto, J.M.1
Lamattina, L.2
Bonnard, G.3
Weil, J.H.4
Grienenberger, J.M.5
-
34
-
-
0024804414
-
RNA editing in plant mitochondria
-
Hiesel R, Wissinger B, Schuster W, Brennicke A, (1989) RNA editing in plant mitochondria. Science 246: 1632-1634.
-
(1989)
Science
, vol.246
, pp. 1632-1634
-
-
Hiesel, R.1
Wissinger, B.2
Schuster, W.3
Brennicke, A.4
-
35
-
-
0025910413
-
Editing of a chloroplast mRNA by creation of an initiation codon
-
Hoch B, Maier RM, Appel K, Igloi GL, Kossel H, (1991) Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353: 178-180.
-
(1991)
Nature
, vol.353
, pp. 178-180
-
-
Hoch, B.1
Maier, R.M.2
Appel, K.3
Igloi, G.L.4
Kossel, H.5
-
36
-
-
0026029987
-
A termination codon is created by RNA editing in the petunia atp9 transcript
-
Wintz H, Hanson MR, (1991) A termination codon is created by RNA editing in the petunia atp9 transcript. Curr Genet 19: 61-64.
-
(1991)
Curr Genet
, vol.19
, pp. 61-64
-
-
Wintz, H.1
Hanson, M.R.2
-
37
-
-
33645074681
-
RNA editing in plant organelles: machinery, physiological function and evolution
-
Shikanai T, (2006) RNA editing in plant organelles: machinery, physiological function and evolution. Cell Mol Life Sci 63: 698-708.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 698-708
-
-
Shikanai, T.1
-
38
-
-
0026703040
-
Regenerating good sense: RNA editing and trans splicing in plant mitochondria
-
Wissinger B, Brennicke A, Schuster W, (1992) Regenerating good sense: RNA editing and trans splicing in plant mitochondria. Trends Genet 8: 322-328.
-
(1992)
Trends Genet
, vol.8
, pp. 322-328
-
-
Wissinger, B.1
Brennicke, A.2
Schuster, W.3
-
39
-
-
0027571255
-
RNA editing gives a new meaning to the genetic information in mitochondria and chloroplasts
-
Pring D, Brennicke A, Schuster W, (1993) RNA editing gives a new meaning to the genetic information in mitochondria and chloroplasts. Plant Mol Biol 21: 1163-1170.
-
(1993)
Plant Mol Biol
, vol.21
, pp. 1163-1170
-
-
Pring, D.1
Brennicke, A.2
Schuster, W.3
-
40
-
-
25444502084
-
PREP-Mt: predictive RNA editor for plant mitochondrial genes
-
Mower JP, (2005) PREP-Mt: predictive RNA editor for plant mitochondrial genes. BMC Bioinformatics 6: 96.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 96
-
-
Mower, J.P.1
-
41
-
-
0030963751
-
Cell type-specific loss of atp6 RNA editing in cytoplasmic male sterile Sorghum bicolor
-
Howad W, Kempken F, (1997) Cell type-specific loss of atp6 RNA editing in cytoplasmic male sterile Sorghum bicolor. Proc Natl Acad Sci U S A 94: 11090-11095.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 11090-11095
-
-
Howad, W.1
Kempken, F.2
-
42
-
-
0029902648
-
Developmental- and tissue-specificity of RNA editing in mitochondria of suspension-cultured maize cells and seedlings
-
Grosskopf D, Mulligan RM, (1996) Developmental- and tissue-specificity of RNA editing in mitochondria of suspension-cultured maize cells and seedlings. Curr Genet 29: 556-563.
-
(1996)
Curr Genet
, vol.29
, pp. 556-563
-
-
Grosskopf, D.1
Mulligan, R.M.2
-
43
-
-
33646850768
-
The Rice Mitochondrial Genomes and Their Variations
-
Tian X, Zheng J, Hu S, Yu J, (2006) The Rice Mitochondrial Genomes and Their Variations. Plant Physiology 140: 401-410.
-
(2006)
Plant Physiology
, vol.140
, pp. 401-410
-
-
Tian, X.1
Zheng, J.2
Hu, S.3
Yu, J.4
-
44
-
-
0034815350
-
Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber
-
Lilly JW, Havey MJ, (2001) Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber. Genetics 159: 317-328.
-
(2001)
Genetics
, vol.159
, pp. 317-328
-
-
Lilly, J.W.1
Havey, M.J.2
-
45
-
-
79251638682
-
The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats
-
Alverson AJ, Zhuo S, Rice DW, Sloan DB, Palmer JD, (2011) The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats. PLoS One 6: e16404.
-
(2011)
PLoS One
, vol.6
-
-
Alverson, A.J.1
Zhuo, S.2
Rice, D.W.3
Sloan, D.B.4
Palmer, J.D.5
-
46
-
-
11144234440
-
Sequence and comparative analysis of the maize NB mitochondrial genome
-
Clifton SW, Minx P, Fauron CM, Gibson M, Allen JO, et al. (2004) Sequence and comparative analysis of the maize NB mitochondrial genome. Plant Physiol 136: 3486-3503.
-
(2004)
Plant Physiol
, vol.136
, pp. 3486-3503
-
-
Clifton, S.W.1
Minx, P.2
Fauron, C.M.3
Gibson, M.4
Allen, J.O.5
-
47
-
-
0036017866
-
Six active phage-type RNA polymerase genes in Nicotiana tabacum
-
Hedtke B, Legen J, Weihe A, Herrmann RG, Borner T, (2002) Six active phage-type RNA polymerase genes in Nicotiana tabacum. Plant J 30: 625-637.
-
(2002)
Plant J
, vol.30
, pp. 625-637
-
-
Hedtke, B.1
Legen, J.2
Weihe, A.3
Herrmann, R.G.4
Borner, T.5
-
48
-
-
13744249250
-
Multiple promoters are a common feature of mitochondrial genes in Arabidopsis
-
Kuhn K, Weihe A, Borner T, (2005) Multiple promoters are a common feature of mitochondrial genes in Arabidopsis. Nucleic Acids Res 33: 337-346.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 337-346
-
-
Kuhn, K.1
Weihe, A.2
Borner, T.3
-
49
-
-
0029859194
-
A cytoplasmic male sterility-associated mitochondrial protein causes pollen disruption in transgenic tobacco
-
He S, Abad AR, Gelvin SB, Mackenzie SA, (1996) A cytoplasmic male sterility-associated mitochondrial protein causes pollen disruption in transgenic tobacco. Proc Natl Acad Sci U S A 93: 11763-11768.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 11763-11768
-
-
He, S.1
Abad, A.R.2
Gelvin, S.B.3
Mackenzie, S.A.4
-
50
-
-
79957658849
-
Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions
-
Fujii S, Toda T, Kikuchi S, Suzuki R, Yokoyama K, et al. (2011) Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions. BMC Genomics 12: 279.
-
(2011)
BMC Genomics
, vol.12
, pp. 279
-
-
Fujii, S.1
Toda, T.2
Kikuchi, S.3
Suzuki, R.4
Yokoyama, K.5
-
51
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
52
-
-
37349131062
-
Mitochondrial regulation of flower development
-
Carlsson J, Leino M, Sohlberg J, Sundstrom JF, Glimelius K, (2008) Mitochondrial regulation of flower development. Mitochondrion 8: 74-86.
-
(2008)
Mitochondrion
, vol.8
, pp. 74-86
-
-
Carlsson, J.1
Leino, M.2
Sohlberg, J.3
Sundstrom, J.F.4
Glimelius, K.5
-
53
-
-
0028384731
-
Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number
-
Huang J, Struck F, Matzinger DF, Levings CS III, (1994) Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number. Plant Cell 6: 439-448.
-
(1994)
Plant Cell
, vol.6
, pp. 439-448
-
-
Huang, J.1
Struck, F.2
Matzinger, D.F.3
Levings III, C.S.4
-
54
-
-
78650118924
-
Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells
-
Preuten T, Cincu E, Fuchs J, Zoschke R, Liere K, et al. (2010) Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells. Plant J 64: 948-959.
-
(2010)
Plant J
, vol.64
, pp. 948-959
-
-
Preuten, T.1
Cincu, E.2
Fuchs, J.3
Zoschke, R.4
Liere, K.5
-
55
-
-
0035698690
-
Mitochondrial gene expression in stamens is differentially regulated during male gametogenesis in Arabidopsis
-
Kalantidis K, Wilson Z, Mulligan B, (2002) Mitochondrial gene expression in stamens is differentially regulated during male gametogenesis in Arabidopsis. Sexual Plant Reproduction 14: 299-304.
-
(2002)
Sexual Plant Reproduction
, vol.14
, pp. 299-304
-
-
Kalantidis, K.1
Wilson, Z.2
Mulligan, B.3
-
56
-
-
0028556821
-
RNA editing of mat-r transcripts in maize and soybean increases similarity of the encoded protein to fungal and bryophyte group II intron maturases: evidence that mat-r encodes a functional protein
-
Thomson MC, Macfarlane JL, Beagley CT, Wolstenholme DR, (1994) RNA editing of mat-r transcripts in maize and soybean increases similarity of the encoded protein to fungal and bryophyte group II intron maturases: evidence that mat-r encodes a functional protein. Nucleic Acids Res 22: 5745-5752.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5745-5752
-
-
Thomson, M.C.1
Macfarlane, J.L.2
Beagley, C.T.3
Wolstenholme, D.R.4
-
57
-
-
0002516932
-
Transcriptional and Post-Transcriptional Regulation of RNA Levels in Maize Mitochondria
-
Finnegan PM, Brown GG, (1990) Transcriptional and Post-Transcriptional Regulation of RNA Levels in Maize Mitochondria. Plant Cell 2: 71-83.
-
(1990)
Plant Cell
, vol.2
, pp. 71-83
-
-
Finnegan, P.M.1
Brown, G.G.2
-
58
-
-
70450177746
-
BFAST: an alignment tool for large scale genome resequencing
-
Homer N, Merriman B, Nelson SF, (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS One 4: e7767.
-
(2009)
PLoS One
, vol.4
-
-
Homer, N.1
Merriman, B.2
Nelson, S.F.3
-
59
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
60
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
61
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
62
-
-
58149191274
-
Rfam: updates to the RNA families database
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, et al. (2009) Rfam: updates to the RNA families database. Nucleic Acids Res 37: D136-140.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
-
63
-
-
0035890910
-
REPuter: the manifold applications of repeat analysis on a genomic scale
-
Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, et al. (2001) REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res 29: 4633-4642.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4633-4642
-
-
Kurtz, S.1
Choudhuri, J.V.2
Ohlebusch, E.3
Schleiermacher, C.4
Stoye, J.5
-
64
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G, (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
65
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
66
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
67
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
68
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
-
69
-
-
39749142161
-
The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
-
Chaw SM, Shih AC, Wang D, Wu YW, Liu SM, et al. (2008) The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites. Mol Biol Evol 25: 603-615.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 603-615
-
-
Chaw, S.M.1
Shih, A.C.2
Wang, D.3
Wu, Y.W.4
Liu, S.M.5
|