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Volumn 9, Issue 11, 2014, Pages

Variability among the most rapidly evolving plastid genomic regions is lineage-specific: Implications of pairwise genome comparisons in Pyrus (Rosaceae) and other angiosperms for marker choice

Author keywords

[No Author keywords available]

Indexed keywords

ANGIOSPERM; ARTICLE; CELL LINEAGE; CHROMOSOME INVERSION; CHROMOSOME SUBSTITUTION; CONTROLLED STUDY; CYMBIDIUM; CYMBIDIUM SINENSE; CYMBIDIUM TORTISEPALUM; EVENING PRIMROSE; GENE MUTATION; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; INDEL MUTATION; INTRON; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OENOTHERA ARGILLICOLA; OENOTHERA PARVIFLORA; OLEA WOODIANA; OLIVE TREE; PLASTID GENOME; PROMOTER REGION; PYRUS; PYRUS PYRIFOLIA; PYRUS SPINOSA; SPECIES COMPARISON; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; MOLECULAR GENETICS; PHYLOGENY; PLANT GENOME; PLASTID; SPECIES DIFFERENCE;

EID: 84912544103     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0112998     Document Type: Article
Times cited : (37)

References (68)
  • 1
    • 0029104627 scopus 로고
    • The use of chloroplast DNA polymorphism in studies of gene flow in plants
    • McCauley DE (1995) The use of chloroplast DNA polymorphism in studies of gene flow in plants. Trends Ecol Evol 10: 198-202.
    • (1995) Trends Ecol Evol , vol.10 , pp. 198-202
    • McCauley, D.E.1
  • 2
    • 0031406079 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
    • Sang T, Crawford DJ, Stuessy TF (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot 84: 1120- 1136.
    • (1997) Am J Bot , vol.84 , pp. 1120-1136
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 3
    • 0030966299 scopus 로고    scopus 로고
    • Evolution of alcohol dehydrogenase genes in peonies (Paeonia): Phylogenetic relationships of putative nonhybrid species
    • Sang T, Donoghue MJ, Zhang DM (1997) Evolution of alcohol dehydrogenase genes in peonies (Paeonia): Phylogenetic relationships of putative nonhybrid species. Mol Biol Evol 14: 994-1007.
    • (1997) Mol Biol Evol , vol.14 , pp. 994-1007
    • Sang, T.1    Donoghue, M.J.2    Zhang, D.M.3
  • 5
    • 84912560022 scopus 로고    scopus 로고
    • Flora of China:, (2008). Published on the Internet, Missouri Botanical Garden, St. Louis, MO & Harvard University Herbaria, Cambridge, MA
    • Cuizhi G, Spongberg SA (2003) Pyrus. Flora of China: eFloras (2008). Published on the Internet http://www.efloras.org, Missouri Botanical Garden, St. Louis, MO & Harvard University Herbaria, Cambridge, MA. pp. 173-179.
    • (2003) Pyrus , pp. 173-179
    • Cuizhi, G.1    Spongberg, S.A.2
  • 6
    • 79957462294 scopus 로고    scopus 로고
    • O vidakh roda Pyrus L. (Rosaceae) v Armenii
    • Akopian JA (2007) O vidakh roda Pyrus L. (Rosaceae) v Armenii [On the Pyrus L. (Rosaceae) species in Armenia]. Fl Rast Rastitel Resurs Armenii 16: 15-26.
    • (2007) Fl Rast Rastitel Resurs Armenii , vol.16 , pp. 15-26
    • Akopian, J.A.1
  • 7
    • 9544226364 scopus 로고
    • Rod grusha Pyrus L
    • Sokolov SJ, editor. [The trees and shrubs of the USSR]. Moskva, Leningrad: Izdatel'stvo Akademii Nauk SSSR [National Science Academy of the U.S.S.R. publishing]
    • Fedorov AA (1954) Rod grusha Pyrus L. [The genus pear Pyrus L.]. In: Sokolov SJ, editor. Derev'a i kustarniki SSSR [The trees and shrubs of the USSR]. Moskva, Leningrad: Izdatel'stvo Akademii Nauk SSSR [National Science Academy of the U.S.S.R. publishing]. pp. 378-414.
    • (1954) Derev'a I Kustarniki SSSR , pp. 378-414
    • Fedorov, A.A.1
  • 8
    • 19944430021 scopus 로고    scopus 로고
    • The tortoise and the hare II: Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
    • Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, et al. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92: 142-166.
    • (2005) Am J Bot , vol.92 , pp. 142-166
    • Shaw, J.1    Lickey, E.B.2    Beck, J.T.3    Farmer, S.B.4    Liu, W.5
  • 9
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III
    • Shaw J, Lickey EB, Schilling EE, Small RL (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. Am J Bot 94: 275-288.
    • (2007) Am J Bot , vol.94 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 10
    • 0036800826 scopus 로고    scopus 로고
    • Group II introns as phylogenetic tools: Structure, function, and evolutionary constraints
    • Kelchner SA (2002) Group II introns as phylogenetic tools: Structure, function, and evolutionary constraints. Am J Bot 89: 1651-1669.
    • (2002) Am J Bot , vol.89 , pp. 1651-1669
    • Kelchner, S.A.1
  • 11
    • 70350411170 scopus 로고    scopus 로고
    • Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA
    • Borsch T, Quandt D (2009) Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA. Plant Syst Evol 282: 169-199.
    • (2009) Plant Syst Evol , vol.282 , pp. 169-199
    • Borsch, T.1    Quandt, D.2
  • 12
    • 70350398788 scopus 로고    scopus 로고
    • Phylogeny of the eudicot order Malpighiales: Analysis of a recalcitrant clade with sequences of the petD group II intron
    • Korotkova N, Schneider J, Quandt D, Worberg A, Zizka G, et al. (2009) Phylogeny of the eudicot order Malpighiales: Analysis of a recalcitrant clade with sequences of the petD group II intron. Plant Syst Evol 282: 201-228.
    • (2009) Plant Syst Evol , vol.282 , pp. 201-228
    • Korotkova, N.1    Schneider, J.2    Quandt, D.3    Worberg, A.4    Zizka, G.5
  • 13
    • 84869094459 scopus 로고    scopus 로고
    • Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding
    • Dong W, Liu J, Yu J, Wang L, Zhou S (2012) Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. PLoS ONE 7: e35071.
    • (2012) PLoS ONE , vol.7 , pp. e35071
    • Dong, W.1    Liu, J.2    Yu, J.3    Wang, L.4    Zhou, S.5
  • 14
    • 84896726478 scopus 로고    scopus 로고
    • Predicting plastid marker variation: Can complete plastid genomes from closely related species help?
    • Särkinen T, George M (2013) Predicting plastid marker variation: Can complete plastid genomes from closely related species help? PLoS ONE 8: e82266.
    • (2013) PLoS ONE , vol.8 , pp. e82266
    • Särkinen, T.1    George, M.2
  • 15
    • 37649007931 scopus 로고    scopus 로고
    • Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
    • Jansen RK, Cai Z, Raubeson LA, Daniell H, dePamphilis CW, et al. (2007) Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci USA 104: 19369-19374.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19369-19374
    • Jansen, R.K.1    Cai, Z.2    Raubeson, L.A.3    Daniell, H.4    DePamphilis, C.W.5
  • 17
    • 56149096455 scopus 로고    scopus 로고
    • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    • Cronn R, Liston A, Parks M, Gernandt DS, Shen R, et al. (2008) Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res 36.
    • (2008) Nucleic Acids Res , vol.36
    • Cronn, R.1    Liston, A.2    Parks, M.3    Gernandt, D.S.4    Shen, R.5
  • 18
    • 72549096467 scopus 로고    scopus 로고
    • Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    • Parks M, Cronn R, Liston A (2009) Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol 7.
    • (2009) BMC Biol , vol.7
    • Parks, M.1    Cronn, R.2    Liston, A.3
  • 19
    • 84864455784 scopus 로고    scopus 로고
    • Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: Origin and evolution of allotetraploids
    • Xu Q, Xiong G, Li P, He F, Huang Y, et al. (2012) Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: Origin and evolution of allotetraploids. PLoS ONE 7.
    • (2012) PLoS ONE , vol.7
    • Xu, Q.1    Xiong, G.2    Li, P.3    He, F.4    Huang, Y.5
  • 20
    • 84870237757 scopus 로고    scopus 로고
    • Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
    • Njuguna W, Liston A, Cronn R, Ashman TL, Bassil N (2013) Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing. Mol Phylogenet Evol 66: 17-29.
    • (2013) Mol Phylogenet Evol , vol.66 , pp. 17-29
    • Njuguna, W.1    Liston, A.2    Cronn, R.3    Ashman, T.L.4    Bassil, N.5
  • 21
    • 77956920110 scopus 로고    scopus 로고
    • Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison
    • Mariotti R, Cultrera NG, Diez CM, Baldoni L, Rubini A (2010) Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison. BMC Plant Biol 10: 211.
    • (2010) BMC Plant Biol , vol.10 , pp. 211
    • Mariotti, R.1    Cultrera, N.G.2    Diez, C.M.3    Baldoni, L.4    Rubini, A.5
  • 22
    • 84881593390 scopus 로고    scopus 로고
    • Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa
    • Ahmed I, Matthews PJ, Biggs PJ, Naeem M, McLenachan PA, et al. (2013) Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa. Mol Ecol Resour: 929-937.
    • (2013) Mol Ecol Resour , pp. 929-937
    • Ahmed, I.1    Matthews, P.J.2    Biggs, P.J.3    Naeem, M.4    McLenachan, P.A.5
  • 23
    • 84860137960 scopus 로고    scopus 로고
    • The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
    • Jheng CF, Chen TC, Lin JY, Wu WL, Chang CC (2012) The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids. Plant Sci 190: 62-73.
    • (2012) Plant Sci , vol.190 , pp. 62-73
    • Jheng, C.F.1    Chen, T.C.2    Lin, J.Y.3    Wu, W.L.4    Chang, C.C.5
  • 24
    • 84876165796 scopus 로고    scopus 로고
    • Complete chloroplast genome of the genus Cymbidium: Lights into the species identification, phylogenetic implications and population genetic analyses
    • Yang J-B, Tang M, Li H-T, Zhang Z-R, Li D-Z (2013) Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses. BMC Evol Biol 13: 84.
    • (2013) BMC Evol Biol , vol.13 , pp. 84
    • Yang, J.-B.1    Tang, M.2    Li, H.-T.3    Zhang, Z.-R.4    Li, D.-Z.5
  • 25
    • 84876965512 scopus 로고    scopus 로고
    • Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. And comparative analyses of asterid plastid genomes
    • Ku C, Hu J-M, Kuo C-H (2013) Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. and comparative analyses of asterid plastid genomes. PLoS ONE 8: e62548.
    • (2013) PLoS ONE , vol.8 , pp. e62548
    • Ku, C.1    Hu, J.-M.2    Kuo, C.-H.3
  • 26
    • 84879170708 scopus 로고    scopus 로고
    • The complete plastid genome sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid genome evolution, molecular marker identification, and phylogenetic implications in Asterids
    • Ku C, Chung W-C, Chen L-L, Kuo C-H (2013) The complete plastid genome sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid genome evolution, molecular marker identification, and phylogenetic implications in Asterids. PLoS ONE 8: e68518.
    • (2013) PLoS ONE , vol.8 , pp. e68518
    • Ku, C.1    Chung, W.-C.2    Chen, L.-L.3    Kuo, C.-H.4
  • 27
    • 84865573364 scopus 로고    scopus 로고
    • Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): Genome structure and comparative analysis
    • Terakami S, Matsumura Y, Kurita K, Kanamori H, Katayose Y, et al. (2012) Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): genome structure and comparative analysis. Tree Genet Genomes 8: 841-854.
    • (2012) Tree Genet Genomes , vol.8 , pp. 841-854
    • Terakami, S.1    Matsumura, Y.2    Kurita, K.3    Kanamori, H.4    Katayose, Y.5
  • 29
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 32
    • 0034491886 scopus 로고    scopus 로고
    • The evolution of non-coding chloroplast DNA and its application in plant systematics
    • Kelchner SA (2000) The evolution of non-coding chloroplast DNA and its application in plant systematics. Ann Missouri Bot Gard 87: 482-498.
    • (2000) Ann Missouri Bot Gard , vol.87 , pp. 482-498
    • Kelchner, S.A.1
  • 33
    • 12344325917 scopus 로고    scopus 로고
    • Molecular evolution and phylogenetic utility of the petD group II intron: A case study in basal angiosperms
    • Löhne C, Borsch T (2005) Molecular evolution and phylogenetic utility of the petD group II intron: A case study in basal angiosperms. Mol Biol Evol 22: 317- 332.
    • (2005) Mol Biol Evol , vol.22 , pp. 317-332
    • Löhne, C.1    Borsch, T.2
  • 34
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol Biol Evol 30: 772- 780.
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 37
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - A review
    • Michel F, Umesono K, Ozeki H (1989) Comparative and functional anatomy of group II catalytic introns - A review. Gene 82: 5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 38
    • 2442626706 scopus 로고    scopus 로고
    • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
    • Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101: 7287-7292.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7287-7292
    • Mathews, D.H.1    Disney, M.D.2    Childs, J.L.3    Schroeder, S.J.4    Zuker, M.5
  • 39
    • 0037268447 scopus 로고    scopus 로고
    • Comparative analysis of chloroplast DNA in Pyrus species: Physical map and gene localization
    • Katayama H, Uematsu C (2003) Comparative analysis of chloroplast DNA in Pyrus species: physical map and gene localization. Theor Appl Genet 106: 303- 310.
    • (2003) Theor Appl Genet , vol.106 , pp. 303-310
    • Katayama, H.1    Uematsu, C.2
  • 40
    • 84858074915 scopus 로고    scopus 로고
    • Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae)
    • Lo EYY, Donoghue MJ (2012) Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae). Mol Phylogenet Evol 63: 230- 243.
    • (2012) Mol Phylogenet Evol , vol.63 , pp. 230-243
    • Lo, E.Y.Y.1    Donoghue, M.J.2
  • 41
    • 84858614962 scopus 로고    scopus 로고
    • Phylogenetic utility of structural alterations found in the chloroplast genome of pear: Hypervariable regions in a highly conserved genome
    • Katayama H, Tachibana M, Iketani H, Zhang S-L, Uematsu C (2012) Phylogenetic utility of structural alterations found in the chloroplast genome of pear: hypervariable regions in a highly conserved genome. Tree Genet Genomes 8: 313-326.
    • (2012) Tree Genet Genomes , vol.8 , pp. 313-326
    • Katayama, H.1    Tachibana, M.2    Iketani, H.3    Zhang, S.-L.4    Uematsu, C.5
  • 42
    • 84872666744 scopus 로고    scopus 로고
    • A phylogenetic network of wild Ussurian pears (Pyrus ussuriensis Maxim.) in China revealed by hypervariable regions of chloroplast DNA
    • Wuyun T, Ma T, Uematsu C, Katayama H (2013) A phylogenetic network of wild Ussurian pears (Pyrus ussuriensis Maxim.) in China revealed by hypervariable regions of chloroplast DNA. Tree Genet Genomes 9: 167-177.
    • (2013) Tree Genet Genomes , vol.9 , pp. 167-177
    • Wuyun, T.1    Ma, T.2    Uematsu, C.3    Katayama, H.4
  • 43
    • 34250367990 scopus 로고    scopus 로고
    • Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers
    • Löhne C, Borsch T, Wiersema JH (2007) Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers. Bot J Linn Soc 154: 141-163.
    • (2007) Bot J Linn Soc , vol.154 , pp. 141-163
    • Löhne, C.1    Borsch, T.2    Wiersema, J.H.3
  • 44
    • 84856100601 scopus 로고    scopus 로고
    • What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae)
    • Korotkova N, Borsch T, Quandt D, Taylor NP, Müller K, et al. (2011) What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae). Am J Bot 98: 1549-1572.
    • (2011) Am J Bot , vol.98 , pp. 1549-1572
    • Korotkova, N.1    Borsch, T.2    Quandt, D.3    Taylor, N.P.4    Müller, K.5
  • 45
    • 84859794943 scopus 로고    scopus 로고
    • Phylogenetics of early branching eudicots: Comparing phylogenetic signal across plastid introns, spacers, and genes
    • Barniske A-M, Borsch T, Müller K, Krug M, Worberg A, et al. (2012) Phylogenetics of early branching eudicots: Comparing phylogenetic signal across plastid introns, spacers, and genes. J Syst Evol 50: 85-108.
    • (2012) J Syst Evol , vol.50 , pp. 85-108
    • Barniske, A.-M.1    Borsch, T.2    Müller, K.3    Krug, M.4    Worberg, A.5
  • 46
    • 33749560637 scopus 로고    scopus 로고
    • Molecular systematics of Descurainia (Brassicaceae) in the Canary Islands: Biogeographic and taxonomic implications
    • Goodson BE, Santos-Guerra A, Jansen RK (2006) Molecular systematics of Descurainia (Brassicaceae) in the Canary Islands: biogeographic and taxonomic implications. Taxon 55: 671-682.
    • (2006) Taxon , vol.55 , pp. 671-682
    • Goodson, B.E.1    Santos-Guerra, A.2    Jansen, R.K.3
  • 47
    • 2442562566 scopus 로고    scopus 로고
    • Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants
    • Lee C, Wen J (2004) Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol Phylogenet Evol 31: 894-903.
    • (2004) Mol Phylogenet Evol , vol.31 , pp. 894-903
    • Lee, C.1    Wen, J.2
  • 48
    • 0001827911 scopus 로고    scopus 로고
    • The intron in chloroplast gene rpl16 is missing from the flowering plant families Geraniaceae, Goodeniaceae, and Plumbaginaceae
    • Campagna ML, Downie SR (1998) The intron in chloroplast gene rpl16 is missing from the flowering plant families Geraniaceae, Goodeniaceae, and Plumbaginaceae. Trans Illinois State Acad Sci 91: 1-11.
    • (1998) Trans Illinois State Acad Sci , vol.91 , pp. 1-11
    • Campagna, M.L.1    Downie, S.R.2
  • 49
    • 33847225091 scopus 로고    scopus 로고
    • A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: Identification of divergent regions and categorization of shared repeats
    • Timme RE, Kuehl JV, Boore JL, Jansen RK (2007) A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: Identification of divergent regions and categorization of shared repeats. Am J Bot 94: 302-312.
    • (2007) Am J Bot , vol.94 , pp. 302-312
    • Timme, R.E.1    Kuehl, J.V.2    Boore, J.L.3    Jansen, R.K.4
  • 50
    • 79954605059 scopus 로고    scopus 로고
    • The complete chloroplast genome of 17 individuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies
    • Doorduin L, Gravendeel B, Lammers Y, Ariyurek Y, Chin-A-Woeng T, et al. (2011) The complete chloroplast genome of 17 individuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies. DNA Res 18: 93-105.
    • (2011) DNA Res , vol.18 , pp. 93-105
    • Doorduin, L.1    Gravendeel, B.2    Lammers, Y.3    Ariyurek, Y.4    Chin-A-Woeng, T.5
  • 51
    • 84942303241 scopus 로고    scopus 로고
    • Genome-wide analysis of plastome sequence variation and development of plastidial CAPS markers in common potato and related Solanum species
    • Gargano D, Scotti N, Vezzi A, Bilardi A, Valle G, et al. (2012) Genome-wide analysis of plastome sequence variation and development of plastidial CAPS markers in common potato and related Solanum species. Genet Resour Crop Evol 59: 419-430.
    • (2012) Genet Resour Crop Evol , vol.59 , pp. 419-430
    • Gargano, D.1    Scotti, N.2    Vezzi, A.3    Bilardi, A.4    Valle, G.5
  • 52
    • 33746761042 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes
    • Daniell H, Lee SB, Grevich J, Saski C, Quesada-Vargas T, et al. (2006) Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Theor Appl Genet 112: 1503-1518.
    • (2006) Theor Appl Genet , vol.112 , pp. 1503-1518
    • Daniell, H.1    Lee, S.B.2    Grevich, J.3    Saski, C.4    Quesada-Vargas, T.5
  • 53
    • 42449162907 scopus 로고    scopus 로고
    • The architecture of the chloroplast psbA-trnH non-coding region in angiosperms
    • Štorchová H, Olson MS (2007) The architecture of the chloroplast psbA-trnH non-coding region in angiosperms. Plant Syst Evol 268: 235-256.
    • (2007) Plant Syst Evol , vol.268 , pp. 235-256
    • Štorchová, H.1    Olson, M.S.2
  • 54
    • 4944228956 scopus 로고    scopus 로고
    • Molecular evolution of the chloroplast trnL-F region in land plants
    • Goffinet B, Hollowell V, Magill R, editors. St Louis: Missouri Botanical Garden Press
    • Quandt D, Müsller K, Stech M, Frahm J-P, Frey W, et al. (2004) Molecular evolution of the chloroplast trnL-F region in land plants. In: Goffinet B, Hollowell V, Magill R, editors. Molecular Systematics of Bryophytes. St Louis: Missouri Botanical Garden Press. pp. 13-37.
    • (2004) Molecular Systematics of Bryophytes , pp. 13-37
    • Quandt, D.1    Müsller, K.2    Stech, M.3    Frahm, J.-P.4    Frey, W.5
  • 55
    • 84895755038 scopus 로고    scopus 로고
    • Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae
    • Wicke S, Schäferhoff B, dePamphilis CW, Müller KF (2014) Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae. Mol Biol Evol 31: 529-545.
    • (2014) Mol Biol Evol , vol.31 , pp. 529-545
    • Wicke, S.1    Schäferhoff, B.2    Depamphilis, C.W.3    Müller, K.F.4
  • 56
    • 0038049910 scopus 로고    scopus 로고
    • Group II introns: Structure and catalytic versatility of large natural ribozymes
    • Lehmann K, Schmidt U (2003) Group II introns: Structure and catalytic versatility of large natural ribozymes. Crit Rev Biochem Mol Biol 38: 249-303.
    • (2003) Crit Rev Biochem Mol Biol , vol.38 , pp. 249-303
    • Lehmann, K.1    Schmidt, U.2
  • 57
    • 27844569938 scopus 로고    scopus 로고
    • Group II Introns: Ribozymes that splice RNA and invade DNA
    • Gesteland RF, Cech TR, Atkins JF, editors. 3rd ed. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Pyle AM, Lambowitz AM (2006) Group II Introns: Ribozymes that splice RNA and invade DNA. In: Gesteland RF, Cech TR, Atkins JF, editors. The RNA World. 3rd ed. Cold Spring Harbor: Cold Spring Harbor Laboratory Press. pp. 449-505.
    • (2006) The RNA World , pp. 449-505
    • Pyle, A.M.1    Lambowitz, A.M.2
  • 58
    • 0032420129 scopus 로고    scopus 로고
    • Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants
    • KällersjöM, Farris JS, Chase MW, Bremer B, Fay MF, et al. (1998) Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants. Plant Syst Evol 213: 259-287.
    • (1998) Plant Syst Evol , vol.213 , pp. 259-287
    • Källersjö, M.1    Farris, J.S.2    Chase, M.W.3    Bremer, B.4    Fay, M.F.5
  • 59
    • 33748594712 scopus 로고    scopus 로고
    • Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: Contrasting matK, trnT-F, and rbcL in basal angiosperms
    • Müller K, Borsch T, Hilu KW (2006) Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: Contrasting matK, trnT-F, and rbcL in basal angiosperms. Mol Phylogenet Evol 41: 99-117.
    • (2006) Mol Phylogenet Evol , vol.41 , pp. 99-117
    • Müller, K.1    Borsch, T.2    Hilu, K.W.3
  • 60
    • 40949097834 scopus 로고    scopus 로고
    • Characterization of Coffea chloroplast microsatellites and evidence for the recent divergence of C. Arabica and C. Eugenioides chloroplast genomes
    • Tesfaye K, Borsch T, Govers K, Bekele E (2007) Characterization of Coffea chloroplast microsatellites and evidence for the recent divergence of C. arabica and C. eugenioides chloroplast genomes. Genome 50: 1112-1129.
    • (2007) Genome , vol.50 , pp. 1112-1129
    • Tesfaye, K.1    Borsch, T.2    Govers, K.3    Bekele, E.4
  • 61
    • 34249793694 scopus 로고    scopus 로고
    • Phylogeny of Nymphaea (Nymphaeaceae): Evidence from substitutions and microstructural changes in the chloroplast trnT-trnF region
    • Borsch T, Hilu KW, Wiersema JH, Lohne C, Barthlott W, et al. (2007) Phylogeny of Nymphaea (Nymphaeaceae): Evidence from substitutions and microstructural changes in the chloroplast trnT-trnF region. Int J Plant Sci 168: 639-671.
    • (2007) Int J Plant Sci , vol.168 , pp. 639-671
    • Borsch, T.1    Hilu, K.W.2    Wiersema, J.H.3    Lohne, C.4    Barthlott, W.5
  • 62
    • 0141958971 scopus 로고    scopus 로고
    • Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions
    • Quandt D, Müller K, Huttunen S (2003) Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions. Plant Biol 5: 400-410.
    • (2003) Plant Biol , vol.5 , pp. 400-410
    • Quandt, D.1    Müller, K.2    Huttunen, S.3
  • 63
    • 77955386103 scopus 로고    scopus 로고
    • Intraspecific inversions pose a challenge for the trnH-psbA plant DNA barcode
    • Whitlock BA, Hale AM, Groff PA (2010) Intraspecific inversions pose a challenge for the trnH-psbA plant DNA barcode. PLoS ONE 5: e11533.
    • (2010) PLoS ONE , vol.5 , pp. e11533
    • Whitlock, B.A.1    Hale, A.M.2    Groff, P.A.3
  • 64
    • 84875551521 scopus 로고    scopus 로고
    • Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions
    • Fior S, Li M, Oxelman B, Viola R, Hodges SA, et al. (2013) Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions. New Phytol 198: 579-592.
    • (2013) New Phytol , vol.198 , pp. 579-592
    • Fior, S.1    Li, M.2    Oxelman, B.3    Viola, R.4    Hodges, S.A.5
  • 65
    • 44949092403 scopus 로고    scopus 로고
    • Reticulate or tree-like chloroplast DNA evolution in Sileneae (Caryophyllaceae)?
    • Erixon P, Oxelman B (2008) Reticulate or tree-like chloroplast DNA evolution in Sileneae (Caryophyllaceae)? Mol Phylogenet Evol 48: 313-325.
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 313-325
    • Erixon, P.1    Oxelman, B.2
  • 66
    • 49749145901 scopus 로고    scopus 로고
    • The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data
    • Greiner S, Wang X, Herrmann RG, Rauwolf U, Mayer K, et al. (2008) The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data. Mol Biol Evol 25: 2019-2030.
    • (2008) Mol Biol Evol , vol.25 , pp. 2019-2030
    • Greiner, S.1    Wang, X.2    Herrmann, R.G.3    Rauwolf, U.4    Mayer, K.5
  • 67
    • 42449113802 scopus 로고    scopus 로고
    • The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. Sequence evaluation and plastome evolution
    • Greiner S, Wang X, Rauwolf U, Silber MV, Mayer K, et al. (2008) The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. Sequence evaluation and plastome evolution. Nucleic Acids Res 36: 2366-2378.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2366-2378
    • Greiner, S.1    Wang, X.2    Rauwolf, U.3    Silber, M.V.4    Mayer, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.