-
1
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes
-
Rodríguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, et al. (2005) Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol 15: 1325-1330.
-
(2005)
Curr Biol
, vol.15
, pp. 1325-1330
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burey, S.C.3
Roure, B.4
Burger, G.5
-
2
-
-
41849087357
-
An update on chloroplast genomes
-
Ravi V, Khurana JP, Tyagi AK, Khurana P, (2008) An update on chloroplast genomes. Plant Syst Evol 271: 101-122.
-
(2008)
Plant Syst Evol
, vol.271
, pp. 101-122
-
-
Ravi, V.1
Khurana, J.P.2
Tyagi, A.K.3
Khurana, P.4
-
3
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
APG III
-
APG III, (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161: 105-121.
-
(2009)
Bot J Linn Soc
, vol.161
, pp. 105-121
-
-
-
4
-
-
38849124960
-
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
-
McNeal JR, Kuehl JV, Boore JL, dePamphilis CW, (2007) Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. BMC Plant Biol 7: 57.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 57
-
-
McNeal, J.R.1
Kuehl, J.V.2
Boore, J.L.3
dePamphilis, C.W.4
-
5
-
-
0026451883
-
Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes
-
Wolfe KH, Morden CW, Ems SC, Palmer JD, (1992) Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes. J Mol Evol 35: 304-317.
-
(1992)
J Mol Evol
, vol.35
, pp. 304-317
-
-
Wolfe, K.H.1
Morden, C.W.2
Ems, S.C.3
Palmer, J.D.4
-
6
-
-
0036036258
-
Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels
-
Bremer B, Bremer K, Heidari N, Erixon P, Olmstead RG, et al. (2002) Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Mol Phylogen Evol 24: 274-301.
-
(2002)
Mol Phylogen Evol
, vol.24
, pp. 274-301
-
-
Bremer, B.1
Bremer, K.2
Heidari, N.3
Erixon, P.4
Olmstead, R.G.5
-
8
-
-
0038544963
-
Myrisnaceae
-
In: Wu Z, Raven PH, editors, 1 ed. Beijing: Science Press
-
Chen J, Pipoly JJ (1996) Myrisnaceae. In: Wu Z, Raven PH, editors. Flora of China. 1 ed. Beijing: Science Press. 1-38.
-
(1996)
Flora of China
, pp. 1-38
-
-
Chen, J.1
Pipoly, J.J.2
-
10
-
-
0034754691
-
Wild edible plants of the Sikkim Himalaya: Nutritive values of selected species
-
Sundriyal M, Sundriyal RC, (2001) Wild edible plants of the Sikkim Himalaya: Nutritive values of selected species. Econ Bot 55: 377-390.
-
(2001)
Econ Bot
, vol.55
, pp. 377-390
-
-
Sundriyal, M.1
Sundriyal, R.C.2
-
11
-
-
0004700593
-
Angiospermae, Dicotyledoneae, Mysinaceae
-
In: Chen C, editor, Beijing: Science Press
-
Chen C (1979) Angiospermae, Dicotyledoneae, Mysinaceae. In: Chen C, editor. Flora Reipublicae Popularis Sinicae Tomus 58. Beijing: Science Press. 1-147.
-
(1979)
Flora Reipublicae Popularis Sinicae Tomus
, vol.58
, pp. 1-147
-
-
Chen, C.1
-
12
-
-
0042733741
-
Comparative study of the antioxidant effect of ardisin and epigallocatechin gallate in rat hepatocytes exposed to benomyl and 1-nitropyrene
-
Ramírez-Mares MV, González de Mejía E, (2003) Comparative study of the antioxidant effect of ardisin and epigallocatechin gallate in rat hepatocytes exposed to benomyl and 1-nitropyrene. Food Chem Toxicol 41: 1527-1535.
-
(2003)
Food Chem Toxicol
, vol.41
, pp. 1527-1535
-
-
Ramírez-Mares, M.V.1
González de Mejía, E.2
-
13
-
-
0029943066
-
Constituents of Ardisia japonica and their in vitro anti-HIV activity
-
Piacente S, Pizza C, De Tommasi N, Mahmood N, (1996) Constituents of Ardisia japonica and their in vitro anti-HIV activity. J Nat Prod 59: 565-569.
-
(1996)
J Nat Prod
, vol.59
, pp. 565-569
-
-
Piacente, S.1
Pizza, C.2
De Tommasi, N.3
Mahmood, N.4
-
14
-
-
33746923472
-
Catalytic inhibition of human DNA topoisomerase by phenolic compounds in Ardisia compressa extracts and their effect on human colon cancer cells
-
González de Mejía E, Chandra S, Ramírez-Mares M, Wang W, (2006) Catalytic inhibition of human DNA topoisomerase by phenolic compounds in Ardisia compressa extracts and their effect on human colon cancer cells. Food Chem Toxicol 44: 1191-1203.
-
(2006)
Food Chem Toxicol
, vol.44
, pp. 1191-1203
-
-
González de Mejía, E.1
Chandra, S.2
Ramírez-Mares, M.3
Wang, W.4
-
15
-
-
0028535360
-
Triterpenoid saponins from Ardisia crenata
-
Jia Z, Koike K, Ohmoto T, Ni M, (1994) Triterpenoid saponins from Ardisia crenata. Phytochemistry 37: 1389-1396.
-
(1994)
Phytochemistry
, vol.37
, pp. 1389-1396
-
-
Jia, Z.1
Koike, K.2
Ohmoto, T.3
Ni, M.4
-
16
-
-
0035651256
-
Ardisiaquinones from Ardisia teysmanniana
-
Yang LK, Khoo-Beattie C, Goh KL, Chng BL, Yoganathan K, et al. (2001) Ardisiaquinones from Ardisia teysmanniana. Phytochemistry 58: 1235-1238.
-
(2001)
Phytochemistry
, vol.58
, pp. 1235-1238
-
-
Yang, L.K.1
Khoo-Beattie, C.2
Goh, K.L.3
Chng, B.L.4
Yoganathan, K.5
-
17
-
-
0036835438
-
Ardisiphenols and other antioxidant principles from the fruits of Ardisia colorata
-
Sumino M, Sekine T, Ruangrungsi N, Igarashi K, Ikegami F, (2002) Ardisiphenols and other antioxidant principles from the fruits of Ardisia colorata. Chem Pharm Bull 50: 1484-1487.
-
(2002)
Chem Pharm Bull
, vol.50
, pp. 1484-1487
-
-
Sumino, M.1
Sekine, T.2
Ruangrungsi, N.3
Igarashi, K.4
Ikegami, F.5
-
18
-
-
21644480292
-
The genus Ardisia: a novel source of health-promoting compounds and phytopharmaceuticals
-
Kobayashi H, de Mejia E, (2005) The genus Ardisia: a novel source of health-promoting compounds and phytopharmaceuticals. J Ethnopharmacol 96: 347-354.
-
(2005)
J Ethnopharmacol
, vol.96
, pp. 347-354
-
-
Kobayashi, H.1
de Mejia, E.2
-
19
-
-
84876996778
-
-
London: Sherwood, Neely, & Jones
-
Sims J (1818) Curtis's Botanical Magazine Vol. 45. London: Sherwood, Neely, & Jones.
-
(1818)
Curtis's Botanical Magazine
, vol.45
-
-
Sims, J.1
-
20
-
-
84864391167
-
Inferring the invasion history of coral berry Ardisia crenata from China to the USA using molecular markers
-
Niu H-Y, Hong L, Wang Z-F, Shen H, Ye W-H, et al. (2012) Inferring the invasion history of coral berry Ardisia crenata from China to the USA using molecular markers. Ecol Res 27: 809-818.
-
(2012)
Ecol Res
, vol.27
, pp. 809-818
-
-
Niu, H.-Y.1
Hong, L.2
Wang, Z.-F.3
Shen, H.4
Ye, W.-H.5
-
21
-
-
79957858571
-
Bacterial leaf symbiosis in Ardisia (Myrsinoideae, Primulaceae): molecular evidence for host specificity
-
Lemaire B, Smets E, Dessein S, (2011) Bacterial leaf symbiosis in Ardisia (Myrsinoideae, Primulaceae): molecular evidence for host specificity. Res Microbiol 162: 528-534.
-
(2011)
Res Microbiol
, vol.162
, pp. 528-534
-
-
Lemaire, B.1
Smets, E.2
Dessein, S.3
-
22
-
-
0032828218
-
New synonyms and combinations in Asiatic Ardisia (Myrsinaceae)
-
Hu CM, (1999) New synonyms and combinations in Asiatic Ardisia (Myrsinaceae). Blumea 44: 391-406.
-
(1999)
Blumea
, vol.44
, pp. 391-406
-
-
Hu, C.M.1
-
23
-
-
0033059310
-
An enumeration of Myrsinaceae of Taiwan
-
Yang Y-P, (1999) An enumeration of Myrsinaceae of Taiwan. Bot Bull Acad Sin 40: 39-47.
-
(1999)
Bot Bull Acad Sin
, vol.40
, pp. 39-47
-
-
Yang, Y.-P.1
-
26
-
-
34250254231
-
Development of chloro-etioplasts containing prolamellar bodies and steroidal saponins in suspension cultures of Nicotiana tabacum
-
Kesselmeier J, (1980) Development of chloro-etioplasts containing prolamellar bodies and steroidal saponins in suspension cultures of Nicotiana tabacum. Protoplasma 104: 295-306.
-
(1980)
Protoplasma
, vol.104
, pp. 295-306
-
-
Kesselmeier, J.1
-
27
-
-
4644241217
-
Engineering the chloroplast genome for hyperexpression of human therapeutic proteins and vaccine antigens
-
In: Balbás P, Lorence A, editors, Humana Press
-
Kumar S, Daniell H (2004) Engineering the chloroplast genome for hyperexpression of human therapeutic proteins and vaccine antigens. In: Balbás P, Lorence A, editors. Recombinant Gene Expression: Humana Press. 365-383.
-
(2004)
Recombinant Gene Expression
, pp. 365-383
-
-
Kumar, S.1
Daniell, H.2
-
28
-
-
79957801161
-
Interspecific relationships and variation of 12 species in Ardisia Sw. (Myrsinaceae) based on ITS and trnL-F data sets
-
Xu L-l, Li T-j, Zhang M-y, Yi G-m, Liao L, (2009) Interspecific relationships and variation of 12 species in Ardisia Sw. (Myrsinaceae) based on ITS and trnL-F data sets. Acta Hortic Sin 36: 1531-1537.
-
(2009)
Acta Hortic Sin
, vol.36
, pp. 1531-1537
-
-
Xu, L.-l.1
Li, T.-j.2
Zhang, M.-y.3
Yi, G.-m.4
Liao, L.5
-
29
-
-
0028241525
-
Rates and patterns of chloroplast DNA evolution
-
Clegg MT, Gaut BS, Learn GH, Morton BR, (1994) Rates and patterns of chloroplast DNA evolution. Proc Natl Acad Sci USA 91: 6795-6801.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6795-6801
-
-
Clegg, M.T.1
Gaut, B.S.2
Learn, G.H.3
Morton, B.R.4
-
30
-
-
33847225091
-
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
-
Timme RE, Kuehl JV, Boore JL, Jansen RK, (2007) A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am J Bot 94: 302-312.
-
(2007)
Am J Bot
, vol.94
, pp. 302-312
-
-
Timme, R.E.1
Kuehl, J.V.2
Boore, J.L.3
Jansen, R.K.4
-
31
-
-
0035283384
-
Chloroplast microsatellites: new tools for studies in plant ecology and evolution
-
Provan J, Powell W, Hollingsworth PM, (2001) Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends Ecol Evol 16: 142-147.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 142-147
-
-
Provan, J.1
Powell, W.2
Hollingsworth, P.M.3
-
32
-
-
84856770811
-
Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
-
Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT, (2012) Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS One 7: e30087.
-
(2012)
PLoS One
, vol.7
-
-
Luo, C.1
Tsementzi, D.2
Kyrpides, N.3
Read, T.4
Konstantinidis, K.T.5
-
33
-
-
84863206928
-
The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction
-
Lin C-P, Wu C-S, Huang Y-Y, Chaw S-M, (2012) The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol 4: 374-381.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 374-381
-
-
Lin, C.-P.1
Wu, C.-S.2
Huang, Y.-Y.3
Chaw, S.-M.4
-
34
-
-
80052008793
-
Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics
-
Kuang D-Y, Wu H, Wang Y-L, Gao L-M, Zhang S-Z, et al. (2011) Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics. Genome 54: 663-673.
-
(2011)
Genome
, vol.54
, pp. 663-673
-
-
Kuang, D.-Y.1
Wu, H.2
Wang, Y.-L.3
Gao, L.-M.4
Zhang, S.-Z.5
-
35
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
37
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics 10: 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
-
38
-
-
84857422020
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, et al. (2012) GenBank. Nucleic Acids Res 40: D48-D53.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Clark, K.3
Lipman, D.J.4
Ostell, J.5
-
39
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
40
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, et al. (2011) Integrative genomics viewer. Nat Biotechnol 29: 24-26.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
-
41
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
Wyman SK, Jansen RK, Boore JL, (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
-
(2004)
Bioinformatics
, vol.20
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
-
42
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
43
-
-
36048989002
-
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
-
Lohse M, Drechsel O, Bock R, (2007) OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet 52: 267-274.
-
(2007)
Curr Genet
, vol.52
, pp. 267-274
-
-
Lohse, M.1
Drechsel, O.2
Bock, R.3
-
44
-
-
40749117710
-
GenomeVx: simple web-based creation of editable circular chromosome maps
-
Conant GC, Wolfe KH, (2008) GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 24: 861-862.
-
(2008)
Bioinformatics
, vol.24
, pp. 861-862
-
-
Conant, G.C.1
Wolfe, K.H.2
-
45
-
-
84861006956
-
Complete chloroplast genome sequences of important oilseed crop Sesamum indicum
-
Yi D-K, Kim K-J, (2012) Complete chloroplast genome sequences of important oilseed crop Sesamum indicum. PLoS One 7: e35872.
-
(2012)
PLoS One
, vol.7
-
-
Yi, D.-K.1
Kim, K.-J.2
-
46
-
-
84863425048
-
The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); Comparative evolutionary analyses with other three asterids
-
Yi D-K, Lee H-L, Sun B-Y, Chung M, Kim K-J, (2012) The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); Comparative evolutionary analyses with other three asterids. Molecules and Cells 33: 497-508.
-
(2012)
Molecules and Cells
, vol.33
, pp. 497-508
-
-
Yi, D.-K.1
Lee, H.-L.2
Sun, B.-Y.3
Chung, M.4
Kim, K.-J.5
-
47
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
48
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J, (1989) PHYLIP- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
50
-
-
0033066718
-
REPuter: fast computation of maximal repeats in complete genomes
-
Kurtz S, Schleiermacher C, (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15: 426-427.
-
(1999)
Bioinformatics
, vol.15
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
51
-
-
72849141142
-
Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines
-
Kumar S, Hahn F, McMahan C, Cornish K, Whalen M, (2009) Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines. BMC Plant Biol 9: 131.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 131
-
-
Kumar, S.1
Hahn, F.2
McMahan, C.3
Cornish, K.4
Whalen, M.5
-
52
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ, Roos DS, (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
53
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
54
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
55
-
-
0023674314
-
Trans-splicing in chloroplasts: the rps12 loci of Nicotiana tabacum
-
Hildebrand M, Hallick RB, Passavant CW, Bourque DP, (1988) Trans-splicing in chloroplasts: the rps12 loci of Nicotiana tabacum. Proc Natl Acad Sci USA 85: 372-376.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 372-376
-
-
Hildebrand, M.1
Hallick, R.B.2
Passavant, C.W.3
Bourque, D.P.4
-
56
-
-
0026447426
-
Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant
-
Wolfe KH, Morden CW, Palmer JD, (1992) Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc Natl Acad Sci USA 89: 10648-10652.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10648-10652
-
-
Wolfe, K.H.1
Morden, C.W.2
Palmer, J.D.3
-
57
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart PJ, Steel MA, Hendy MD, Penny D, (1994) Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol 11: 605-612.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
58
-
-
56649099178
-
Whole-genome mutational biases in bacteria
-
Lind PA, Andersson DI, (2008) Whole-genome mutational biases in bacteria. Proc Natl Acad Sci USA 105: 17878-17883.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17878-17883
-
-
Lind, P.A.1
Andersson, D.I.2
-
59
-
-
0036840720
-
Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat
-
Perry AS, Wolfe KH, (2002) Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat. J Mol Evol 55: 501-508.
-
(2002)
J Mol Evol
, vol.55
, pp. 501-508
-
-
Perry, A.S.1
Wolfe, K.H.2
-
60
-
-
5544227896
-
Nicotiana chloroplast genes for components of the photosynthetic apparatus
-
Shinozaki K, Hayashida N, Sugiura M, (1988) Nicotiana chloroplast genes for components of the photosynthetic apparatus. Photosynthesis Res 18: 7-31.
-
(1988)
Photosynthesis Res
, vol.18
, pp. 7-31
-
-
Shinozaki, K.1
Hayashida, N.2
Sugiura, M.3
-
61
-
-
0027478870
-
A transcription map of the chloroplast genome from rice (Oryza sativa)
-
Kanno A, Hirai A, (1993) A transcription map of the chloroplast genome from rice (Oryza sativa). Curr Genet 23: 166-174.
-
(1993)
Curr Genet
, vol.23
, pp. 166-174
-
-
Kanno, A.1
Hirai, A.2
-
62
-
-
67649216301
-
Cyclamen: time, sea and speciation biogeography using a temporally calibrated phylogeny
-
Yesson C, Toomey NH, Culham A, (2009) Cyclamen: time, sea and speciation biogeography using a temporally calibrated phylogeny. J Biogeogr 36: 1234-1252.
-
(2009)
J Biogeogr
, vol.36
, pp. 1234-1252
-
-
Yesson, C.1
Toomey, N.H.2
Culham, A.3
-
63
-
-
84855202604
-
Allopolyploid origin of highly invasive Centaurea stoebe s.l. (Asteraceae)
-
Mráz P, Garcia-Jacas N, Gex-Fabry E, Susanna A, Barres L, et al. (2012) Allopolyploid origin of highly invasive Centaurea stoebe s.l. (Asteraceae). Mol Phylogen Evol 62: 612-623.
-
(2012)
Mol Phylogen Evol
, vol.62
, pp. 612-623
-
-
Mráz, P.1
Garcia-Jacas, N.2
Gex-Fabry, E.3
Susanna, A.4
Barres, L.5
-
64
-
-
0036032537
-
Nested clade analysis of Dunnia sinensis (Rubiaceae), a monotypic genus from China based on organelle DNA sequences
-
Ge XJ, Chiang YC, Chou CH, Chiang TY, (2002) Nested clade analysis of Dunnia sinensis (Rubiaceae), a monotypic genus from China based on organelle DNA sequences. Conserv Genet 3: 351-362.
-
(2002)
Conserv Genet
, vol.3
, pp. 351-362
-
-
Ge, X.J.1
Chiang, Y.C.2
Chou, C.H.3
Chiang, T.Y.4
-
65
-
-
79955119810
-
Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA
-
Huang C-C, Hung K-H, Hwang C-C, Huang J-C, Lin H-D, et al. (2011) Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA. BMC Evol Biol 11: 108.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 108
-
-
Huang, C.-C.1
Hung, K.-H.2
Hwang, C.-C.3
Huang, J.-C.4
Lin, H.-D.5
-
66
-
-
19944430021
-
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
-
Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, et al. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92: 142-166.
-
(2005)
Am J Bot
, vol.92
, pp. 142-166
-
-
Shaw, J.1
Lickey, E.B.2
Beck, J.T.3
Farmer, S.B.4
Liu, W.5
-
67
-
-
77956920110
-
Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison
-
Mariotti R, Cultrera N, Diez C, Baldoni L, Rubini A, (2010) Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison. BMC Plant Biol 10: 211.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 211
-
-
Mariotti, R.1
Cultrera, N.2
Diez, C.3
Baldoni, L.4
Rubini, A.5
-
68
-
-
34250767339
-
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
-
Shaw J, Lickey EB, Schilling EE, Small RL, (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot 94: 275-288.
-
(2007)
Am J Bot
, vol.94
, pp. 275-288
-
-
Shaw, J.1
Lickey, E.B.2
Schilling, E.E.3
Small, R.L.4
-
69
-
-
84861010943
-
Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora)
-
Nie X, Lv S, Zhang Y, Du X, Wang L, et al. (2012) Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora). PLoS One 7: e36869.
-
(2012)
PLoS One
, vol.7
-
-
Nie, X.1
Lv, S.2
Zhang, Y.3
Du, X.4
Wang, L.5
-
70
-
-
34447635560
-
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
-
Raubeson L, Peery R, Chumley T, Dziubek C, Fourcade HM, et al. (2007) Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. BMC Genomics 8: 174.
-
(2007)
BMC Genomics
, vol.8
, pp. 174
-
-
Raubeson, L.1
Peery, R.2
Chumley, T.3
Dziubek, C.4
Fourcade, H.M.5
-
71
-
-
84865561370
-
Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes
-
Huotari T, Korpelainen H, (2012) Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes. Gene 508: 96-105.
-
(2012)
Gene
, vol.508
, pp. 96-105
-
-
Huotari, T.1
Korpelainen, H.2
-
72
-
-
43149125849
-
Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes
-
Haberle R, Fourcade HM, Boore J, Jansen R, (2008) Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes. J Mol Evol 66: 350-361.
-
(2008)
J Mol Evol
, vol.66
, pp. 350-361
-
-
Haberle, R.1
Fourcade, H.M.2
Boore, J.3
Jansen, R.4
-
73
-
-
11144284040
-
Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants
-
Kim KJ, Lee HL, (2004) Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Res 11: 247-261.
-
(2004)
DNA Res
, vol.11
, pp. 247-261
-
-
Kim, K.J.1
Lee, H.L.2
-
74
-
-
0041834716
-
Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
-
Goremykin VV, Hirsch-Ernst KI, Wölfl S, Hellwig FH, (2003) Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol Biol Evol 20: 1499-1505.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1499-1505
-
-
Goremykin, V.V.1
Hirsch-Ernst, K.I.2
Wölfl, S.3
Hellwig, F.H.4
-
75
-
-
0029905884
-
Ebb and flow of the chloroplast inverted repeat
-
Goulding SE, Wolfe KH, Olmstead RG, Morden CW, (1996) Ebb and flow of the chloroplast inverted repeat. Mol Gen Genet 252: 195-206.
-
(1996)
Mol Gen Genet
, vol.252
, pp. 195-206
-
-
Goulding, S.E.1
Wolfe, K.H.2
Olmstead, R.G.3
Morden, C.W.4
-
76
-
-
34548108492
-
Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants
-
Wu C-S, Wang Y-N, Liu S-M, Chaw S-M, (2007) Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol Biol Evol 24: 1366-1379.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1366-1379
-
-
Wu, C.-S.1
Wang, Y.-N.2
Liu, S.-M.3
Chaw, S.-M.4
-
77
-
-
30744447444
-
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications
-
Chang C-C, Lin H-C, Lin IP, Chow T-Y, Chen H-H, et al. (2006) The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Mol Biol Evol 23: 279-291.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 279-291
-
-
Chang, C.-C.1
Lin, H.-C.2
Lin, I.P.3
Chow, T.-Y.4
Chen, H.-H.5
-
78
-
-
78649548084
-
Angiosperm phylogeny inferred from sequences of four mitochondrial genes
-
Qiu Y-L, Li L, Wang B, Xue J-Y, Hendry TA, et al. (2010) Angiosperm phylogeny inferred from sequences of four mitochondrial genes. J Syst Evol 48: 391-425.
-
(2010)
J Syst Evol
, vol.48
, pp. 391-425
-
-
Qiu, Y.-L.1
Li, L.2
Wang, B.3
Xue, J.-Y.4
Hendry, T.A.5
-
79
-
-
78650511270
-
Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
-
Finet C, Timme RE, Delwiche CF, Marlétaz F, (2010) Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Curr Biol 20: 2217-2222.
-
(2010)
Curr Biol
, vol.20
, pp. 2217-2222
-
-
Finet, C.1
Timme, R.E.2
Delwiche, C.F.3
Marlétaz, F.4
-
80
-
-
0034937408
-
Phylogenetic analysis of asterids based on sequences of four genes
-
Albach DC, Soltis PS, Soltis DE, Olmstead RG, (2001) Phylogenetic analysis of asterids based on sequences of four genes. Ann Mo Bot Gard 88: 163-212.
-
(2001)
Ann Mo Bot Gard
, vol.88
, pp. 163-212
-
-
Albach, D.C.1
Soltis, P.S.2
Soltis, D.E.3
Olmstead, R.G.4
-
81
-
-
84863337944
-
Angiosperm phylogeny: 17 genes, 640 taxa
-
Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, et al. (2011) Angiosperm phylogeny: 17 genes, 640 taxa. Am J Bot 98: 704-730.
-
(2011)
Am J Bot
, vol.98
, pp. 704-730
-
-
Soltis, D.E.1
Smith, S.A.2
Cellinese, N.3
Wurdack, K.J.4
Tank, D.C.5
-
82
-
-
77949494249
-
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
-
Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE, (2010) Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc Natl Acad Sci USA 107: 4623-4628.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4623-4628
-
-
Moore, M.J.1
Soltis, P.S.2
Bell, C.D.3
Burleigh, J.G.4
Soltis, D.E.5
-
83
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen RK, Cai Z, Raubeson LA, Daniell H, dePamphilis CW, et al. (2007) Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci USA 104: 19369-19374.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
dePamphilis, C.W.5
-
84
-
-
0035056576
-
Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus
-
Millen RS, Olmstead RG, Adams KL, Palmer JD, Lao NT, et al. (2001) Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. Plant Cell 13: 645-658.
-
(2001)
Plant Cell
, vol.13
, pp. 645-658
-
-
Millen, R.S.1
Olmstead, R.G.2
Adams, K.L.3
Palmer, J.D.4
Lao, N.T.5
-
85
-
-
0028146011
-
Protein substitution in chloroplast ribosome evolution: a eukaryotic cytosolic protein has replaced its organelle homologue (L23) in spinach
-
Bubunenko MG, Schmidt J, Subramanian AR, (1994) Protein substitution in chloroplast ribosome evolution: a eukaryotic cytosolic protein has replaced its organelle homologue (L23) in spinach. J Mol Biol 240: 28-41.
-
(1994)
J Mol Biol
, vol.240
, pp. 28-41
-
-
Bubunenko, M.G.1
Schmidt, J.2
Subramanian, A.R.3
-
86
-
-
84872172799
-
Loss of the acetyl-CoA carboxylase (accD) gene in Poales
-
Harris M, Meyer G, Vandergon T, Vandergon V, (2013) Loss of the acetyl-CoA carboxylase (accD) gene in Poales. Plant Mol Biol Report 31: 21-31.
-
(2013)
Plant Mol Biol Report
, vol.31
, pp. 21-31
-
-
Harris, M.1
Meyer, G.2
Vandergon, T.3
Vandergon, V.4
-
87
-
-
29144475752
-
The tobacco plastid accD gene is essential and is required for leaf development
-
Kode V, Mudd EA, Iamtham S, Day A, (2005) The tobacco plastid accD gene is essential and is required for leaf development. Plant J 44: 237-244.
-
(2005)
Plant J
, vol.44
, pp. 237-244
-
-
Kode, V.1
Mudd, E.A.2
Iamtham, S.3
Day, A.4
-
88
-
-
80054975725
-
Nonessential plastid-encoded ribosomal proteins in tobacco: a developmental role for plastid translation and implications for reductive genome evolution
-
Fleischmann TT, Scharff LB, Alkatib S, Hasdorf S, Schöttler MA, et al. (2011) Nonessential plastid-encoded ribosomal proteins in tobacco: a developmental role for plastid translation and implications for reductive genome evolution. Plant Cell 23: 3137-3155.
-
(2011)
Plant Cell
, vol.23
, pp. 3137-3155
-
-
Fleischmann, T.T.1
Scharff, L.B.2
Alkatib, S.3
Hasdorf, S.4
Schöttler, M.A.5
-
89
-
-
34548321590
-
Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions
-
Lee H-L, Jansen RK, Chumley TW, Kim K-J, (2007) Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions. Mol Biol Evol 24: 1161-1180.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1161-1180
-
-
Lee, H.-L.1
Jansen, R.K.2
Chumley, T.W.3
Kim, K.-J.4
-
90
-
-
0035082732
-
The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization
-
Schmitz-Linneweber C, Maier RM, Alcaraz JP, Cottet A, Herrmann RG, et al. (2001) The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol Biol 45: 307-315.
-
(2001)
Plant Mol Biol
, vol.45
, pp. 307-315
-
-
Schmitz-Linneweber, C.1
Maier, R.M.2
Alcaraz, J.P.3
Cottet, A.4
Herrmann, R.G.5
|